Wall clock time and date at job start Sat Apr 11 2020 00:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47067 * 2 1 4 4 C 1.34703 * 116.99965 * 180.02562 * 3 2 1 5 5 O 1.21444 * 119.99597 * 359.97438 * 4 3 2 6 6 C 1.47923 * 119.99719 * 179.97438 * 4 3 2 7 7 C 1.39597 * 120.00991 * 0.27591 * 6 4 3 8 8 C 1.37811 * 119.99482 * 180.20641 * 7 6 4 9 9 C 1.39560 * 120.00607 * 359.51827 * 8 7 6 10 10 C 1.48042 * 119.99452 * 180.27767 * 9 8 7 11 11 O 1.21525 * 119.99863 * 317.45109 * 10 9 8 12 12 N 1.34779 * 120.00431 * 137.45568 * 10 9 8 13 13 C 1.46498 * 120.00175 * 212.56055 * 12 10 9 14 14 C 1.50702 * 109.47244 * 89.99541 * 13 12 10 15 15 H 1.08001 * 119.99928 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00381 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99775 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47538 * 59.99519 * 18 16 14 20 20 H 1.48500 * 109.47152 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46836 * 299.99231 * 18 16 14 22 22 C 1.46501 * 119.99347 * 32.55257 * 12 10 9 23 23 C 1.52996 * 109.47541 * 301.43019 * 22 12 10 24 24 C 1.53005 * 109.46866 * 61.43348 * 22 12 10 25 25 C 1.39548 * 120.00968 * 0.25046 * 9 8 7 26 26 C 1.37821 * 120.00595 * 359.97438 * 25 9 8 27 27 H 1.08999 * 109.46760 * 59.99634 * 1 2 3 28 28 H 1.08994 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46590 * 300.00111 * 1 2 3 30 30 H 1.09003 * 109.47174 * 240.00096 * 2 1 3 31 31 H 1.08999 * 109.47552 * 119.99890 * 2 1 3 32 32 H 1.08001 * 120.00198 * 359.97438 * 7 6 4 33 33 H 1.08007 * 119.99753 * 179.78720 * 8 7 6 34 34 H 1.08994 * 109.47063 * 209.99962 * 13 12 10 35 35 H 1.09004 * 109.46972 * 329.99772 * 13 12 10 36 36 H 0.96998 * 120.00794 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46565 * 181.42904 * 22 12 10 38 38 H 1.08997 * 109.46996 * 13.45596 * 23 22 12 39 39 H 1.08995 * 109.46798 * 133.45918 * 23 22 12 40 40 H 1.09006 * 109.47039 * 253.45793 * 23 22 12 41 41 H 1.09005 * 109.46938 * 103.91543 * 24 22 12 42 42 H 1.08996 * 109.46701 * 223.91417 * 24 22 12 43 43 H 1.08998 * 109.47287 * 343.91501 * 24 22 12 44 44 H 1.07997 * 119.99937 * 180.02562 * 25 9 8 45 45 H 1.07997 * 120.00131 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5454 -0.0005 5 8 4.0891 0.5823 -0.0005 6 6 3.9147 2.9124 -0.0011 7 6 3.0645 4.0195 0.0047 8 6 3.5915 5.2929 -0.0002 9 6 4.9751 5.4756 -0.0008 10 6 5.5409 6.8437 0.0002 11 8 5.0563 7.7022 -0.7104 12 7 6.5936 7.1371 0.7891 13 6 6.7290 8.4791 1.3607 14 6 6.0350 8.5282 2.6975 15 1 5.5426 7.6476 3.0830 16 6 6.0286 9.6972 3.4284 17 7 6.6285 10.7693 2.9594 18 14 5.1689 9.7578 5.0858 19 1 5.7879 8.7657 6.0011 20 1 5.3061 11.1182 5.6652 21 1 3.7297 9.4375 4.9088 22 6 7.6022 6.1138 1.0751 23 6 6.9326 4.9091 1.7393 24 6 8.2656 5.6726 -0.2312 25 6 5.8252 4.3690 -0.0017 26 6 5.2987 3.0954 -0.0015 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.9938 3.8782 0.0092 33 1 2.9337 6.1496 0.0008 34 1 7.7854 8.7136 1.4910 35 1 6.2752 9.2077 0.6888 36 1 6.6244 11.5917 3.4737 37 1 8.3571 6.5251 1.7451 38 1 5.8511 4.9878 1.6285 39 1 7.2808 3.9921 1.2640 40 1 7.1888 4.8893 2.7986 41 1 9.2562 6.1213 -0.3052 42 1 8.3568 4.5865 -0.2435 43 1 7.6564 5.9956 -1.0753 44 1 6.8959 4.5106 -0.0017 45 1 5.9567 2.2390 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564881895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:05 Heat of formation + Delta-G solvation = -17.712909 kcal Electronic energy + Delta-G solvation = -27191.209295 eV Core-core repulsion = 23370.376912 eV Total energy + Delta-G solvation = -3820.832383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22467 -40.37846 -37.96018 -36.72887 -36.50496 -33.55425 -32.28810 -31.80911 -31.19034 -30.38074 -27.39079 -26.94812 -25.37045 -23.46495 -23.15659 -22.50890 -21.68890 -21.12674 -18.70212 -18.22122 -17.18314 -16.75713 -16.60738 -16.28183 -15.84460 -15.48471 -14.90644 -14.67128 -14.46279 -14.12772 -14.04875 -13.97989 -13.68481 -13.30324 -13.08032 -12.96853 -12.37559 -12.31960 -12.25425 -12.22589 -11.86345 -11.82639 -11.76149 -11.27559 -11.13964 -10.91909 -10.90563 -10.79724 -10.72184 -10.62146 -10.26545 -10.17579 -9.72791 -9.27680 -8.99103 -8.50733 -8.34359 -7.67982 -6.11264 -4.18220 0.46100 1.39246 2.30683 2.42003 3.12841 3.27036 3.31946 3.34531 3.67662 3.88175 4.37006 4.44264 4.61743 4.66935 4.76380 4.81238 4.90583 4.94716 4.95689 5.17650 5.22575 5.26962 5.29738 5.38045 5.45087 5.50618 5.63739 5.64380 5.72926 5.80498 5.82920 5.96170 6.08060 6.14379 6.22354 6.26988 6.29494 6.37966 6.51201 6.74335 7.02427 7.35152 7.50921 7.57567 7.85805 8.14268 8.29087 8.68437 8.90607 9.47902 10.95970 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003373 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.821783 B = 8299.045437 C = 9149.058331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.512 3.488 5 O -0.509 6.509 6 C -0.110 4.110 7 C -0.084 4.084 8 C -0.077 4.077 9 C -0.105 4.105 10 C 0.567 3.433 11 O -0.525 6.525 12 N -0.606 5.606 13 C 0.248 3.752 14 C -0.537 4.537 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.135 3.865 23 C -0.201 4.201 24 C -0.181 4.181 25 C -0.103 4.103 26 C -0.098 4.098 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.265 0.735 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.184 0.816 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 -19.475 -5.536 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.270 6.270 4 C 0.358 3.642 5 O -0.398 6.398 6 C -0.111 4.111 7 C -0.102 4.102 8 C -0.096 4.096 9 C -0.108 4.108 10 C 0.354 3.646 11 O -0.401 6.401 12 N -0.339 5.339 13 C 0.130 3.870 14 C -0.575 4.575 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.201 1.201 22 C 0.030 3.970 23 C -0.257 4.257 24 C -0.238 4.238 25 C -0.120 4.120 26 C -0.116 4.116 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.200 0.800 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.844 -19.081 -5.859 20.539 hybrid contribution -0.495 -0.107 1.210 1.312 sum -5.339 -19.187 -4.649 20.452 Atomic orbital electron populations 1.21813 0.92497 1.02986 1.03725 1.23043 0.95423 0.80010 1.02656 1.86559 1.23899 1.32383 1.84172 1.21326 0.80487 0.89989 0.72431 1.90806 1.60430 1.42508 1.46089 1.19139 0.94161 0.89554 1.08231 1.21287 1.00149 0.91135 0.97642 1.21196 0.93940 0.97455 0.97008 1.20668 0.94617 0.94918 1.00637 1.18055 0.80442 0.86504 0.79578 1.90719 1.61927 1.49666 1.37784 1.48054 1.22165 1.14615 1.49020 1.19366 0.97776 0.76652 0.93229 1.21477 1.35443 0.97218 1.03395 0.92304 1.24935 0.95375 0.95327 0.98274 1.69919 1.43052 1.01557 1.38473 0.86567 0.80205 0.77159 0.83571 1.20166 1.21119 1.20141 1.21053 0.91153 0.88989 0.95792 1.23742 1.03451 0.97125 1.01372 1.22733 1.02200 1.00644 0.98262 1.23014 1.03958 0.91262 0.93778 1.21033 0.93202 0.97549 0.99810 0.91364 0.90208 0.91327 0.91169 0.91144 0.84298 0.84348 0.94790 0.93642 0.92525 0.88255 0.88942 0.91086 0.92144 0.91275 0.91166 0.91612 0.80007 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.54 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -4.03 9.46 -40.50 -0.38 -4.42 16 4 C 0.51 6.73 7.90 34.70 0.27 7.01 16 5 O -0.51 -7.55 16.12 -19.22 -0.31 -7.86 16 6 C -0.11 -1.44 5.88 -104.92 -0.62 -2.06 16 7 C -0.08 -1.09 9.60 -39.23 -0.38 -1.46 16 8 C -0.08 -1.18 9.64 -39.24 -0.38 -1.56 16 9 C -0.10 -1.74 4.28 -104.89 -0.45 -2.19 16 10 C 0.57 11.72 5.85 -12.24 -0.07 11.65 16 11 O -0.52 -12.72 16.79 5.34 0.09 -12.63 16 12 N -0.61 -12.45 2.38 -168.50 -0.40 -12.85 16 13 C 0.25 6.28 5.32 -5.19 -0.03 6.25 16 14 C -0.54 -14.57 9.39 -34.44 -0.32 -14.90 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 18 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.14 2.12 3.27 -67.93 -0.22 1.89 16 23 C -0.20 -2.78 7.72 37.16 0.29 -2.49 16 24 C -0.18 -2.24 8.36 37.16 0.31 -1.93 16 25 C -0.10 -1.40 4.87 -39.25 -0.19 -1.59 16 26 C -0.10 -1.24 9.32 -39.23 -0.37 -1.60 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.14 1.51 7.60 -52.49 -0.40 1.11 16 33 H 0.14 2.11 8.06 -52.48 -0.42 1.69 16 34 H 0.03 0.87 7.93 -51.93 -0.41 0.46 16 35 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 37 H 0.10 1.58 7.81 -51.93 -0.41 1.18 16 38 H 0.09 1.46 4.00 -61.46 -0.25 1.22 16 39 H 0.07 0.76 5.23 -51.93 -0.27 0.49 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 43 H 0.06 0.92 6.83 -51.93 -0.35 0.56 16 44 H 0.18 2.21 1.05 -54.00 -0.06 2.15 16 45 H 0.14 1.55 7.64 -52.49 -0.40 1.15 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -32.59 365.03 -7.60 -40.19 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.17 Total: 2.02 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.63 Total: -1.08 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.34 Total: -37.89 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.60 Total: -24.91 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.59 -7.60 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564881895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.478 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds