Wall clock time and date at job start Sat Apr 11 2020 00:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47067 * 2 1 4 4 C 1.34703 * 116.99965 * 180.02562 * 3 2 1 5 5 O 1.21444 * 119.99597 * 359.97438 * 4 3 2 6 6 C 1.47923 * 119.99719 * 179.97438 * 4 3 2 7 7 C 1.39597 * 120.00991 * 0.27591 * 6 4 3 8 8 C 1.37811 * 119.99482 * 180.20641 * 7 6 4 9 9 C 1.39560 * 120.00607 * 359.51827 * 8 7 6 10 10 C 1.48042 * 119.99452 * 180.27767 * 9 8 7 11 11 O 1.21525 * 119.99863 * 317.45109 * 10 9 8 12 12 N 1.34779 * 120.00431 * 137.45568 * 10 9 8 13 13 C 1.46498 * 120.00175 * 212.56055 * 12 10 9 14 14 C 1.50702 * 109.47244 * 89.99541 * 13 12 10 15 15 H 1.08001 * 119.99928 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00381 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99775 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47538 * 59.99519 * 18 16 14 20 20 H 1.48500 * 109.47152 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46836 * 299.99231 * 18 16 14 22 22 C 1.46501 * 119.99347 * 32.55257 * 12 10 9 23 23 C 1.52996 * 109.47541 * 301.43019 * 22 12 10 24 24 C 1.53005 * 109.46866 * 61.43348 * 22 12 10 25 25 C 1.39548 * 120.00968 * 0.25046 * 9 8 7 26 26 C 1.37821 * 120.00595 * 359.97438 * 25 9 8 27 27 H 1.08999 * 109.46760 * 59.99634 * 1 2 3 28 28 H 1.08994 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46590 * 300.00111 * 1 2 3 30 30 H 1.09003 * 109.47174 * 240.00096 * 2 1 3 31 31 H 1.08999 * 109.47552 * 119.99890 * 2 1 3 32 32 H 1.08001 * 120.00198 * 359.97438 * 7 6 4 33 33 H 1.08007 * 119.99753 * 179.78720 * 8 7 6 34 34 H 1.08994 * 109.47063 * 209.99962 * 13 12 10 35 35 H 1.09004 * 109.46972 * 329.99772 * 13 12 10 36 36 H 0.96998 * 120.00794 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46565 * 181.42904 * 22 12 10 38 38 H 1.08997 * 109.46996 * 13.45596 * 23 22 12 39 39 H 1.08995 * 109.46798 * 133.45918 * 23 22 12 40 40 H 1.09006 * 109.47039 * 253.45793 * 23 22 12 41 41 H 1.09005 * 109.46938 * 103.91543 * 24 22 12 42 42 H 1.08996 * 109.46701 * 223.91417 * 24 22 12 43 43 H 1.08998 * 109.47287 * 343.91501 * 24 22 12 44 44 H 1.07997 * 119.99937 * 180.02562 * 25 9 8 45 45 H 1.07997 * 120.00131 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5454 -0.0005 5 8 4.0891 0.5823 -0.0005 6 6 3.9147 2.9124 -0.0011 7 6 3.0645 4.0195 0.0047 8 6 3.5915 5.2929 -0.0002 9 6 4.9751 5.4756 -0.0008 10 6 5.5409 6.8437 0.0002 11 8 5.0563 7.7022 -0.7104 12 7 6.5936 7.1371 0.7891 13 6 6.7290 8.4791 1.3607 14 6 6.0350 8.5282 2.6975 15 1 5.5426 7.6476 3.0830 16 6 6.0286 9.6972 3.4284 17 7 6.6285 10.7693 2.9594 18 14 5.1689 9.7578 5.0858 19 1 5.7879 8.7657 6.0011 20 1 5.3061 11.1182 5.6652 21 1 3.7297 9.4375 4.9088 22 6 7.6022 6.1138 1.0751 23 6 6.9326 4.9091 1.7393 24 6 8.2656 5.6726 -0.2312 25 6 5.8252 4.3690 -0.0017 26 6 5.2987 3.0954 -0.0015 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.9938 3.8782 0.0092 33 1 2.9337 6.1496 0.0008 34 1 7.7854 8.7136 1.4910 35 1 6.2752 9.2077 0.6888 36 1 6.6244 11.5917 3.4737 37 1 8.3571 6.5251 1.7451 38 1 5.8511 4.9878 1.6285 39 1 7.2808 3.9921 1.2640 40 1 7.1888 4.8893 2.7986 41 1 9.2562 6.1213 -0.3052 42 1 8.3568 4.5865 -0.2435 43 1 7.6564 5.9956 -1.0753 44 1 6.8959 4.5106 -0.0017 45 1 5.9567 2.2390 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564881895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:04 Heat of formation + Delta-G solvation = -36.179737 kcal Electronic energy + Delta-G solvation = -27192.010076 eV Core-core repulsion = 23370.376912 eV Total energy + Delta-G solvation = -3821.633164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.47092 -41.43149 -39.30758 -38.00046 -37.64038 -35.42074 -33.72543 -32.89527 -32.20437 -31.56712 -29.26905 -28.02446 -26.67616 -24.81487 -24.33426 -23.73827 -22.91238 -22.21154 -20.05830 -19.25943 -18.66015 -18.24940 -17.65803 -17.59721 -17.45046 -16.55123 -16.43563 -16.37339 -15.53356 -15.43345 -15.16649 -15.04587 -14.83927 -14.57433 -14.19611 -14.05331 -13.64798 -13.61398 -13.53432 -13.33695 -13.20627 -13.03441 -12.82867 -12.72825 -12.51429 -12.47958 -12.22452 -12.14665 -12.02457 -11.76091 -11.70216 -11.53261 -11.32723 -10.91856 -10.65608 -10.14831 -9.49041 -9.36129 -8.23176 -6.39950 -0.67057 0.32136 1.15578 1.37798 1.40628 1.48333 1.54958 1.68706 2.20052 2.39432 2.68531 3.05874 3.39439 3.60531 3.71723 3.80220 3.86811 4.03204 4.07712 4.08738 4.18704 4.24185 4.34263 4.36631 4.52736 4.62821 4.67477 4.78840 4.84151 4.91455 4.94362 4.99466 5.00570 5.05095 5.14486 5.15942 5.17105 5.19510 5.27753 5.39722 5.43349 5.57546 5.65112 5.86881 6.03609 6.60818 6.64755 6.71239 7.10382 7.33180 8.83037 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.003373 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.821783 B = 8299.045437 C = 9149.058331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.355 6.355 4 C 0.516 3.484 5 O -0.526 6.526 6 C -0.109 4.109 7 C -0.073 4.073 8 C -0.089 4.089 9 C -0.126 4.126 10 C 0.562 3.438 11 O -0.578 6.578 12 N -0.611 5.611 13 C 0.263 3.737 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.011 3.989 17 N -0.927 5.927 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.274 1.274 22 C 0.124 3.876 23 C -0.197 4.197 24 C -0.176 4.176 25 C -0.089 4.089 26 C -0.088 4.088 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.127 0.873 34 H 0.024 0.976 35 H -0.001 1.001 36 H 0.268 0.732 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.047 0.953 44 H 0.198 0.802 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 -22.952 -4.631 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.272 6.272 4 C 0.362 3.638 5 O -0.417 6.417 6 C -0.110 4.110 7 C -0.091 4.091 8 C -0.108 4.108 9 C -0.130 4.130 10 C 0.352 3.648 11 O -0.458 6.458 12 N -0.343 5.343 13 C 0.143 3.857 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.790 3.210 19 H -0.186 1.186 20 H -0.205 1.205 21 H -0.200 1.200 22 C 0.021 3.979 23 C -0.253 4.253 24 C -0.233 4.233 25 C -0.105 4.105 26 C -0.106 4.106 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.145 0.855 34 H 0.042 0.958 35 H 0.017 0.983 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.131 0.869 43 H 0.066 0.934 44 H 0.214 0.786 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.179 -22.607 -4.949 23.715 hybrid contribution -0.415 0.912 0.880 1.334 sum -5.594 -21.695 -4.069 22.771 Atomic orbital electron populations 1.21841 0.90501 1.04457 1.03707 1.23364 0.96988 0.78629 1.02963 1.86558 1.22839 1.34222 1.83591 1.21223 0.81002 0.89508 0.72020 1.90801 1.60957 1.42911 1.47021 1.19338 0.94618 0.89784 1.07249 1.21379 1.01261 0.89912 0.96587 1.21196 0.93427 0.98279 0.97857 1.20351 0.95472 0.93148 1.03986 1.18726 0.79708 0.87990 0.78380 1.90673 1.63193 1.51884 1.40083 1.48031 1.23617 1.13958 1.48687 1.18833 0.96304 0.78624 0.91972 1.21730 1.35520 0.97402 1.03994 0.92307 1.25847 0.95960 0.94847 1.02196 1.70047 1.44282 1.02177 1.40088 0.85486 0.78883 0.77641 0.78958 1.18589 1.20526 1.19951 1.21419 0.90103 0.88531 0.97870 1.23725 1.02240 0.97687 1.01689 1.22697 1.01882 1.03379 0.95352 1.23064 1.04179 0.90539 0.92768 1.21273 0.93407 0.97588 0.98330 0.91291 0.87993 0.91410 0.90813 0.90941 0.82193 0.85537 0.95833 0.98314 0.92322 0.88957 0.90608 0.86987 0.92093 0.90190 0.86917 0.93365 0.78564 0.81908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 71.98 0.74 -0.66 16 2 C 0.05 0.79 6.19 71.98 0.45 1.24 16 3 O -0.36 -7.22 9.46 -56.13 -0.53 -7.76 16 4 C 0.52 12.15 7.90 70.39 0.56 12.71 16 5 O -0.53 -14.07 16.12 20.02 0.32 -13.75 16 6 C -0.11 -2.57 5.88 -20.05 -0.12 -2.69 16 7 C -0.07 -1.78 9.60 22.50 0.22 -1.56 16 8 C -0.09 -2.71 9.64 22.49 0.22 -2.49 16 9 C -0.13 -4.19 4.28 -20.04 -0.09 -4.27 16 10 C 0.56 24.33 5.85 86.84 0.51 24.84 16 11 O -0.58 -30.09 16.79 -3.79 -0.06 -30.16 16 12 N -0.61 -26.10 2.38 -805.31 -1.91 -28.01 16 13 C 0.26 14.12 5.32 85.63 0.46 14.58 16 14 C -0.55 -30.74 9.39 25.60 0.24 -30.50 16 15 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 16 C 0.01 0.62 5.46 84.65 0.46 1.08 16 17 N -0.93 -55.26 13.29 21.44 0.28 -54.97 16 18 Si 0.97 43.78 29.54 68.60 2.03 45.81 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 C 0.12 3.81 3.27 44.99 0.15 3.95 16 23 C -0.20 -5.03 7.72 71.98 0.56 -4.47 16 24 C -0.18 -4.02 8.36 71.98 0.60 -3.42 16 25 C -0.09 -2.20 4.87 22.49 0.11 -2.09 16 26 C -0.09 -1.93 9.32 22.50 0.21 -1.72 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.16 3.14 7.60 -2.91 -0.02 3.11 16 33 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.02 1.29 7.93 -2.39 -0.02 1.27 16 35 H 0.00 -0.08 7.36 -2.39 -0.02 -0.10 16 36 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.09 2.93 7.81 -2.39 -0.02 2.92 16 38 H 0.08 2.28 4.00 -11.34 -0.05 2.23 16 39 H 0.11 1.91 5.23 -2.39 -0.01 1.90 16 40 H 0.06 1.55 8.14 -2.38 -0.02 1.54 16 41 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.11 1.61 6.17 -2.39 -0.01 1.60 16 43 H 0.05 1.31 6.83 -2.39 -0.02 1.29 16 44 H 0.20 4.15 1.05 -4.34 0.00 4.15 16 45 H 0.16 2.85 7.64 -2.91 -0.02 2.83 16 Total: -1.00 -74.62 365.03 6.36 -68.26 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.98 Total: 16.06 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.26 Total: 4.52 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -1.63 Total: -82.99 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -0.27 Total: -51.66 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -74.62 6.36 -68.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564881895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.079 kcal (2) G-P(sol) polarization free energy of solvation -74.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds