Wall clock time and date at job start Sat Apr 11 2020 00:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47527 * 2 1 4 4 C 1.42895 * 114.00059 * 180.02562 * 3 2 1 5 5 C 1.53049 * 109.46161 * 270.03036 * 4 3 2 6 6 C 1.53189 * 109.31263 * 178.59840 * 5 4 3 7 7 N 1.46927 * 108.76394 * 54.65692 * 6 5 4 8 8 S 1.65601 * 120.63099 * 126.40148 * 7 6 5 9 9 O 1.42099 * 104.27821 * 26.05140 * 8 7 6 10 10 O 1.42104 * 104.27869 * 153.90797 * 8 7 6 11 11 C 1.81397 * 104.45090 * 269.97828 * 8 7 6 12 12 C 1.53005 * 109.47158 * 179.97438 * 11 8 7 13 13 C 1.52999 * 109.47220 * 300.00416 * 12 11 8 14 14 C 1.53003 * 109.46961 * 60.00254 * 12 11 8 15 15 C 1.50704 * 109.46911 * 180.02562 * 12 11 8 16 16 H 1.07997 * 120.00057 * 357.69569 * 15 12 11 17 17 C 1.37881 * 119.99374 * 177.69585 * 15 12 11 18 18 N 1.31511 * 120.00461 * 6.58175 * 17 15 12 19 19 Si 1.86800 * 119.99603 * 186.58081 * 17 15 12 20 20 H 1.48495 * 109.47162 * 84.99199 * 19 17 15 21 21 H 1.48503 * 109.47241 * 204.99947 * 19 17 15 22 22 H 1.48505 * 109.47128 * 324.99413 * 19 17 15 23 23 C 1.46932 * 118.74099 * 306.38361 * 7 6 5 24 24 C 1.53038 * 109.46053 * 149.97491 * 4 3 2 25 25 H 1.08995 * 109.47080 * 59.99144 * 1 2 3 26 26 H 1.09007 * 109.46437 * 299.99856 * 1 2 3 27 27 H 1.08999 * 109.47400 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47087 * 120.00830 * 2 1 3 29 29 H 1.09007 * 109.46437 * 240.00144 * 2 1 3 30 30 H 1.09000 * 109.46017 * 30.00175 * 4 3 2 31 31 H 1.08997 * 109.49388 * 298.56409 * 5 4 3 32 32 H 1.08997 * 109.49531 * 58.66140 * 5 4 3 33 33 H 1.08999 * 109.60174 * 294.87298 * 6 5 4 34 34 H 1.09001 * 109.70254 * 174.50318 * 6 5 4 35 35 H 1.08996 * 109.47189 * 299.99889 * 11 8 7 36 36 H 1.09004 * 109.47278 * 60.00308 * 11 8 7 37 37 H 1.08993 * 109.47311 * 66.66505 * 13 12 11 38 38 H 1.08996 * 109.47259 * 186.67253 * 13 12 11 39 39 H 1.09003 * 109.47033 * 306.66605 * 13 12 11 40 40 H 1.08999 * 109.46872 * 59.99697 * 14 12 11 41 41 H 1.08993 * 109.47063 * 179.97438 * 14 12 11 42 42 H 1.08996 * 109.46959 * 299.99568 * 14 12 11 43 43 H 0.96996 * 120.00209 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.58316 * 293.82195 * 23 7 6 45 45 H 1.09000 * 109.70370 * 173.46326 * 23 7 6 46 46 H 1.08999 * 109.50000 * 301.34106 * 24 4 3 47 47 H 1.09002 * 109.49652 * 61.43715 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.9399 1.4992 1.4423 6 6 5.4694 1.5848 1.4378 7 7 5.8759 2.7381 0.6232 8 16 6.8867 3.8943 1.2426 9 8 7.6286 3.2113 2.2438 10 8 7.5304 4.4448 0.1016 11 6 5.7735 5.1128 1.9953 12 6 6.5980 6.2454 2.6104 13 6 7.5289 5.6746 3.6821 14 6 7.4306 6.9210 1.5189 15 6 5.6731 7.2573 3.2362 16 1 4.6033 7.1268 3.1666 17 6 6.1928 8.3498 3.8977 18 7 7.4875 8.5791 3.8725 19 14 5.0578 9.5043 4.8295 20 1 4.8200 8.9698 6.1944 21 1 5.6869 10.8460 4.9258 22 1 3.7640 9.6149 4.1089 23 6 5.3687 2.8459 -0.7516 24 6 3.8403 2.7457 -0.7226 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 0.5139 0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5140 0.8899 29 1 1.8932 -0.5139 -0.8901 30 1 3.8629 0.6014 -0.5148 31 1 3.5280 2.3715 1.9497 32 1 3.6279 0.5938 1.9628 33 1 5.8855 0.6719 1.0118 34 1 5.8334 1.7112 2.4574 35 1 5.1101 5.5191 1.2318 36 1 5.1806 4.6316 2.7732 37 1 8.2739 5.0329 3.2119 38 1 8.0292 6.4919 4.2016 39 1 6.9468 5.0924 4.3964 40 1 6.7673 7.3276 0.7554 41 1 8.0176 7.7281 1.9570 42 1 8.0995 6.1889 1.0667 43 1 7.8531 9.3478 4.3375 44 1 5.7765 2.0358 -1.3560 45 1 5.6640 3.8045 -1.1781 46 1 3.4575 2.7277 -1.7430 47 1 3.4294 3.6061 -0.1945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590744999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:17 Heat of formation + Delta-G solvation = -148.519819 kcal Electronic energy + Delta-G solvation = -26857.870709 eV Core-core repulsion = 23166.810065 eV Total energy + Delta-G solvation = -3691.060644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17424 -38.18535 -38.14956 -37.87022 -36.88595 -33.65777 -33.12787 -32.11511 -31.07668 -28.36105 -27.71019 -27.25882 -25.04308 -24.45868 -23.44263 -21.71357 -21.06417 -19.81959 -18.92282 -17.96026 -17.60307 -17.20309 -16.96885 -16.68948 -16.45083 -15.71096 -15.67445 -15.28359 -14.95767 -14.79099 -14.63018 -14.43959 -14.21188 -13.88115 -13.84401 -13.50103 -13.20515 -12.98829 -12.94604 -12.90755 -12.83635 -12.80431 -12.52147 -12.50358 -12.24448 -12.19071 -12.14899 -12.00770 -11.94458 -11.71509 -11.58626 -11.43440 -11.32693 -10.68408 -10.40500 -10.36558 -9.97799 -8.04638 -6.22716 -0.64286 1.43405 1.44977 1.53121 1.77185 2.43431 2.70993 2.90758 3.16609 3.22204 3.59821 3.84583 3.95962 4.06541 4.09453 4.20414 4.22730 4.28168 4.37567 4.40536 4.45962 4.55172 4.57918 4.71971 4.76003 4.77525 4.83933 4.86284 4.93375 4.95814 4.97615 5.06559 5.08536 5.18138 5.21874 5.26855 5.34989 5.37836 5.47619 5.63325 5.66331 5.96094 6.10562 6.33884 6.38492 6.81519 7.45241 8.95055 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.003926 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.229561 B = 7130.018845 C = 8216.922787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.403 6.403 4 C 0.094 3.906 5 C -0.155 4.155 6 C 0.118 3.882 7 N -1.002 6.002 8 S 2.611 3.389 9 O -0.987 6.987 10 O -0.986 6.986 11 C -0.587 4.587 12 C 0.070 3.930 13 C -0.156 4.156 14 C -0.160 4.160 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.019 3.981 18 N -0.906 5.906 19 Si 0.953 3.047 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.118 3.882 24 C -0.131 4.131 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 -18.234 -8.707 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.323 6.323 4 C 0.037 3.963 5 C -0.194 4.194 6 C -0.007 4.007 7 N -0.841 5.841 8 S 2.709 3.291 9 O -0.977 6.977 10 O -0.976 6.976 11 C -0.719 4.719 12 C 0.068 3.932 13 C -0.214 4.214 14 C -0.218 4.218 15 C -0.558 4.558 16 H 0.079 0.921 17 C -0.181 4.181 18 N -0.545 5.545 19 Si 0.779 3.221 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.007 4.007 24 C -0.170 4.170 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.921 -18.004 -8.721 22.330 hybrid contribution -0.767 1.036 0.888 1.566 sum -10.688 -16.967 -7.832 21.528 Atomic orbital electron populations 1.21768 0.93412 1.03172 1.02469 1.22692 0.95987 0.83148 1.00904 1.87926 1.21369 1.27863 1.95156 1.22027 0.80718 0.98527 0.95060 1.22445 0.94869 1.03870 0.98256 1.21567 0.94765 0.88636 0.95747 1.57751 1.67298 1.36712 1.22339 1.04885 0.75800 0.74599 0.73773 1.93496 1.69512 1.72823 1.61855 1.93492 1.73525 1.79935 1.50688 1.30532 1.14952 1.13943 1.12446 1.17915 0.92368 0.90720 0.92205 1.22135 0.98987 0.99907 1.00381 1.22235 0.99825 1.02062 0.97640 1.21275 0.92795 1.06988 1.34730 0.92146 1.25665 0.96415 0.98896 0.97092 1.69943 1.12500 1.29063 1.42967 0.85649 0.79207 0.78042 0.79205 1.20170 1.21171 1.19369 1.21587 0.93451 1.04404 0.81221 1.22010 0.94765 0.97852 1.02419 0.92391 0.92740 0.89308 0.92612 0.92280 0.90167 0.91696 0.88819 0.88936 0.89459 0.85134 0.85095 0.95242 0.91101 0.93976 0.94270 0.90790 0.94985 0.92848 0.88811 0.89142 0.88459 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 71.98 0.74 -1.09 16 2 C 0.05 0.67 6.47 71.98 0.47 1.13 16 3 O -0.40 -7.90 9.99 -148.98 -1.49 -9.39 16 4 C 0.09 1.65 2.57 30.62 0.08 1.73 16 5 C -0.16 -2.86 5.69 30.67 0.17 -2.69 16 6 C 0.12 2.51 6.32 86.36 0.55 3.05 16 7 N -1.00 -26.32 3.22 -513.06 -1.65 -27.97 16 8 S 2.61 95.42 4.44 -56.49 -0.25 95.17 16 9 O -0.99 -40.61 14.48 -127.65 -1.85 -42.46 16 10 O -0.99 -40.66 14.35 -127.65 -1.83 -42.49 16 11 C -0.59 -22.76 5.11 71.98 0.37 -22.39 16 12 C 0.07 3.42 0.52 -52.92 -0.03 3.39 16 13 C -0.16 -7.82 7.58 71.98 0.55 -7.27 16 14 C -0.16 -8.05 7.80 71.98 0.56 -7.49 16 15 C -0.52 -27.40 8.01 25.60 0.21 -27.20 16 16 H 0.06 3.09 7.75 -2.91 -0.02 3.07 16 17 C 0.02 1.01 5.09 84.66 0.43 1.44 16 18 N -0.91 -50.52 9.39 21.45 0.20 -50.32 16 19 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 C 0.12 2.52 6.31 86.36 0.54 3.06 16 24 C -0.13 -2.47 5.73 30.67 0.18 -2.30 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.66 7.84 -2.38 -0.02 0.64 16 29 H 0.06 0.65 8.08 -2.38 -0.02 0.64 16 30 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.36 7.84 -2.39 -0.02 1.34 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.09 2.03 7.09 -2.39 -0.02 2.01 16 35 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16 36 H 0.13 4.61 8.14 -2.39 -0.02 4.59 16 37 H 0.03 1.40 5.96 -2.39 -0.01 1.39 16 38 H 0.07 3.86 5.99 -2.39 -0.01 3.85 16 39 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 4.06 6.01 -2.39 -0.01 4.05 16 42 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 43 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 2.09 7.11 -2.39 -0.02 2.07 16 46 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -67.32 367.16 0.89 -66.42 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.93 Total: 23.13 kcal Atomic # 6 Polarization: -61.43 SS G_CDS: 4.81 Total: -56.62 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.45 Total: -78.29 kcal Atomic # 8 Polarization: -89.17 SS G_CDS: -5.17 Total: -94.33 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 95.42 SS G_CDS: -0.25 Total: 95.17 kcal Total: -67.32 0.89 -66.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590744999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.096 kcal (2) G-P(sol) polarization free energy of solvation -67.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds