Wall clock time and date at job start Sat Apr 11 2020 00:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47105 * 2 1 4 4 C 1.46495 * 119.99774 * 273.00277 * 3 2 1 5 5 C 1.53000 * 109.47369 * 65.88450 * 4 3 2 6 6 H 1.09002 * 110.43469 * 299.72145 * 5 4 3 7 7 C 1.54812 * 110.49013 * 177.03883 * 5 4 3 8 8 C 1.54999 * 102.08894 * 220.44185 * 7 5 4 9 9 O 1.44382 * 103.49296 * 37.02189 * 8 7 5 10 10 C 1.43743 * 106.97255 * 319.93895 * 9 8 7 11 11 S 1.65604 * 120.00047 * 93.00478 * 3 2 1 12 12 O 1.42096 * 104.27536 * 333.92701 * 11 3 2 13 13 O 1.42092 * 104.27671 * 206.06946 * 11 3 2 14 14 C 1.81405 * 104.44784 * 89.99741 * 11 3 2 15 15 C 1.52998 * 109.46861 * 179.97438 * 14 11 3 16 16 C 1.52991 * 109.47571 * 300.00327 * 15 14 11 17 17 C 1.53006 * 109.47046 * 60.00518 * 15 14 11 18 18 C 1.50699 * 109.46767 * 179.97438 * 15 14 11 19 19 H 1.07994 * 120.00189 * 0.02562 * 18 15 14 20 20 C 1.37887 * 119.99717 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00076 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99779 * 180.02562 * 20 18 15 23 23 H 1.48508 * 109.46944 * 60.00228 * 22 20 18 24 24 H 1.48500 * 109.46764 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47430 * 300.00202 * 22 20 18 26 26 H 1.08997 * 109.47617 * 186.20673 * 1 2 3 27 27 H 1.09003 * 109.46992 * 306.20894 * 1 2 3 28 28 H 1.09004 * 109.47103 * 66.20590 * 1 2 3 29 29 H 1.09001 * 109.47157 * 239.99626 * 2 1 3 30 30 H 1.08998 * 109.46912 * 120.00090 * 2 1 3 31 31 H 1.09006 * 109.47218 * 185.87816 * 4 3 2 32 32 H 1.09000 * 109.47371 * 305.88006 * 4 3 2 33 33 H 1.09003 * 110.90728 * 338.63375 * 7 5 4 34 34 H 1.08996 * 110.90990 * 102.24016 * 7 5 4 35 35 H 1.09002 * 110.61298 * 278.51774 * 8 7 5 36 36 H 1.09000 * 110.61617 * 155.52453 * 8 7 5 37 37 H 1.09007 * 109.87895 * 267.08836 * 10 9 8 38 38 H 1.09001 * 110.00519 * 146.01107 * 10 9 8 39 39 H 1.08999 * 109.46632 * 60.00094 * 14 11 3 40 40 H 1.09003 * 109.47126 * 300.00128 * 14 11 3 41 41 H 1.09001 * 109.47488 * 60.00066 * 16 15 14 42 42 H 1.08998 * 109.47436 * 180.02562 * 16 15 14 43 43 H 1.09008 * 109.47141 * 299.99807 * 16 15 14 44 44 H 1.09003 * 109.47257 * 59.99410 * 17 15 14 45 45 H 1.08998 * 109.47068 * 179.97438 * 17 15 14 46 46 H 1.09004 * 109.46828 * 300.00004 * 17 15 14 47 47 H 0.96992 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1998 2.0939 -1.2670 5 6 0.8387 2.3042 -1.9334 6 1 0.3618 1.3451 -2.1358 7 6 0.9951 3.1210 -3.2392 8 6 -0.2306 4.0678 -3.1785 9 8 -0.3394 4.3886 -1.7750 10 6 -0.0668 3.1801 -1.0460 11 16 2.3652 2.1368 1.4322 12 8 1.5422 1.4774 2.3846 13 8 2.1953 3.5189 1.1493 14 6 4.1139 1.7585 1.7316 15 6 4.5594 2.4099 3.0423 16 6 4.3745 3.9256 2.9473 17 6 3.7149 1.8644 4.1957 18 6 6.0120 2.0951 3.2913 19 1 6.5624 1.4912 2.5852 20 6 6.6382 2.5780 4.4209 21 7 5.9678 3.3129 5.2811 22 14 8.4389 2.1884 4.7292 23 1 9.2587 2.7185 3.6100 24 1 8.8713 2.8206 6.0015 25 1 8.6185 0.7172 4.8207 26 1 -0.3634 -1.0216 0.1111 27 1 -0.3633 0.6071 0.8292 28 1 -0.3633 0.4146 -0.9403 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.6643 3.0614 -1.0763 32 1 2.8400 1.5070 -1.9256 33 1 1.9256 3.6887 -3.2338 34 1 0.9422 2.4716 -4.1129 35 1 -1.1282 3.5563 -3.5261 36 1 -0.0493 4.9684 -3.7652 37 1 -0.9990 2.6557 -0.8359 38 1 0.4446 3.4151 -0.1125 39 1 4.7155 2.1475 0.9101 40 1 4.2457 0.6786 1.7989 41 1 3.3238 4.1529 2.7675 42 1 4.6923 4.3897 3.8810 43 1 4.9762 4.3143 2.1256 44 1 3.8466 0.7844 4.2634 45 1 4.0326 2.3281 5.1296 46 1 2.6641 2.0916 4.0158 47 1 6.4084 3.6530 6.0754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590745265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:27 Heat of formation + Delta-G solvation = -118.970476 kcal Electronic energy + Delta-G solvation = -27431.721737 eV Core-core repulsion = 23741.942448 eV Total energy + Delta-G solvation = -3689.779289 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.68030 -36.87741 -36.63745 -36.27129 -35.28402 -32.66792 -31.67358 -30.49611 -29.22960 -26.64515 -25.72640 -25.39912 -25.21868 -23.15629 -22.23778 -20.52955 -19.46802 -18.48060 -17.55456 -16.58438 -16.33717 -16.00594 -15.82515 -15.30310 -14.94217 -14.79059 -14.63233 -14.14823 -13.65748 -13.17279 -13.13079 -13.04765 -12.92755 -12.58003 -12.47317 -12.14987 -12.04799 -11.84886 -11.59771 -11.48177 -11.39389 -11.14817 -11.09923 -11.05638 -10.96970 -10.77645 -10.70800 -10.49276 -10.38757 -10.26170 -10.11484 -9.70096 -9.66311 -9.54411 -8.99381 -8.64950 -8.40793 -6.04099 -4.16427 0.79456 3.03985 3.26157 3.31860 3.33201 3.90942 4.30300 4.34705 4.41039 4.49611 4.67563 4.72281 4.88355 5.05894 5.09439 5.14538 5.20902 5.23011 5.32082 5.43899 5.51065 5.58149 5.59122 5.64769 5.71039 5.72648 5.77372 5.80775 5.97752 6.07857 6.18181 6.28282 6.36221 6.69019 6.69201 6.78691 6.88082 6.89834 7.03580 7.30328 7.49291 7.66734 7.97175 8.08491 8.32017 8.81752 9.48964 10.97176 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.003863 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.630044 B = 7245.777199 C = 7532.271752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 N -1.010 6.010 4 C 0.128 3.872 5 C -0.138 4.138 6 H 0.091 0.909 7 C -0.150 4.150 8 C 0.044 3.956 9 O -0.374 6.374 10 C 0.042 3.958 11 S 2.586 3.414 12 O -0.958 6.958 13 O -0.956 6.956 14 C -0.582 4.582 15 C 0.082 3.918 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.883 5.883 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.028 0.972 42 H 0.095 0.905 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.095 0.905 46 H 0.027 0.973 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 -5.074 -16.154 19.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.003 4.003 3 N -0.845 5.845 4 C 0.002 3.998 5 C -0.159 4.159 6 H 0.109 0.891 7 C -0.188 4.188 8 C -0.033 4.033 9 O -0.292 6.292 10 C -0.035 4.035 11 S 2.685 3.315 12 O -0.949 6.949 13 O -0.947 6.947 14 C -0.716 4.716 15 C 0.079 3.921 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.521 5.521 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.203 1.203 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.047 0.953 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.114 0.886 46 H 0.046 0.954 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.125 -4.285 -15.387 18.911 hybrid contribution 1.650 -0.892 -0.189 1.886 sum -8.474 -5.177 -15.576 18.473 Atomic orbital electron populations 1.22428 0.96269 1.02406 1.02656 1.21130 0.94577 0.81692 1.02877 1.57944 1.80987 1.23568 1.22016 1.21352 0.95797 0.97625 0.84976 1.23043 0.97642 1.00011 0.95168 0.89091 1.23184 1.00035 0.98427 0.97196 1.23531 0.96565 0.99011 0.84149 1.88919 1.91785 1.31876 1.16666 1.23458 0.97918 0.85226 0.96867 1.05980 0.78940 0.74271 0.72290 1.93542 1.65891 1.76005 1.59424 1.93543 1.86277 1.31620 1.83225 1.30568 1.20558 1.10346 1.10094 1.17935 0.96891 0.91771 0.85468 1.22269 0.98131 0.97837 1.03857 1.22272 0.96112 0.99995 1.03697 1.20900 0.93641 1.32820 1.06935 0.92402 1.24938 0.98116 0.94802 0.95834 1.69787 1.36065 1.34480 1.11785 0.86598 0.84899 0.78564 0.77574 1.20262 1.21141 1.20268 0.91791 0.91437 0.92268 0.90737 0.90086 0.88656 0.90891 0.89934 0.90166 0.92539 0.89101 0.92807 0.88168 0.86518 0.86549 0.95298 0.88661 0.94497 0.94540 0.88628 0.95384 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.61 37.16 0.36 -1.56 16 2 C 0.12 1.37 5.76 -4.04 -0.02 1.35 16 3 N -1.01 -13.60 2.44 -114.38 -0.28 -13.88 16 4 C 0.13 1.48 4.92 -4.04 -0.02 1.46 16 5 C -0.14 -1.47 2.45 -89.09 -0.22 -1.68 16 6 H 0.09 0.81 5.73 -51.93 -0.30 0.52 16 7 C -0.15 -1.31 6.71 -24.72 -0.17 -1.48 16 8 C 0.04 0.44 7.72 38.21 0.29 0.73 16 9 O -0.37 -5.47 11.52 -35.23 -0.41 -5.87 16 10 C 0.04 0.58 6.79 37.73 0.26 0.84 16 11 S 2.59 47.42 4.12 -107.50 -0.44 46.98 16 12 O -0.96 -19.62 14.17 -57.54 -0.82 -20.44 16 13 O -0.96 -19.61 12.22 -57.54 -0.70 -20.31 16 14 C -0.58 -11.35 5.12 37.16 0.19 -11.16 16 15 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 16 C -0.16 -4.03 7.78 37.15 0.29 -3.75 16 17 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16 18 C -0.50 -13.23 8.01 -34.44 -0.28 -13.50 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -24.13 9.35 55.43 0.52 -23.62 16 22 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 28 H 0.06 0.55 5.02 -51.93 -0.26 0.29 16 29 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 31 H 0.10 1.23 7.00 -51.93 -0.36 0.87 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.68 7.93 -51.93 -0.41 0.27 16 38 H 0.10 1.68 4.96 -51.93 -0.26 1.42 16 39 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 40 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 41 H 0.03 0.68 5.46 -51.93 -0.28 0.39 16 42 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 43 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 2.54 6.07 -51.93 -0.31 2.23 16 46 H 0.03 0.66 5.47 -51.93 -0.28 0.37 16 47 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 357.36 15.07 5.39 5.39 Total: -1.00 -31.62 357.36 -8.72 -40.34 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.76 Total: 4.79 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 0.80 Total: -28.94 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.24 Total: -37.49 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.92 Total: -46.62 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 47.42 SS G_CDS: -0.44 Total: 46.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.62 -8.72 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.627 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds