Wall clock time and date at job start Sat Apr 11 2020 00:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47105 * 2 1 4 4 C 1.46495 * 119.99774 * 273.00277 * 3 2 1 5 5 C 1.53000 * 109.47369 * 65.88450 * 4 3 2 6 6 H 1.09002 * 110.43469 * 299.72145 * 5 4 3 7 7 C 1.54812 * 110.49013 * 177.03883 * 5 4 3 8 8 C 1.54999 * 102.08894 * 220.44185 * 7 5 4 9 9 O 1.44382 * 103.49296 * 37.02189 * 8 7 5 10 10 C 1.43743 * 106.97255 * 319.93895 * 9 8 7 11 11 S 1.65604 * 120.00047 * 93.00478 * 3 2 1 12 12 O 1.42096 * 104.27536 * 333.92701 * 11 3 2 13 13 O 1.42092 * 104.27671 * 206.06946 * 11 3 2 14 14 C 1.81405 * 104.44784 * 89.99741 * 11 3 2 15 15 C 1.52998 * 109.46861 * 179.97438 * 14 11 3 16 16 C 1.52991 * 109.47571 * 300.00327 * 15 14 11 17 17 C 1.53006 * 109.47046 * 60.00518 * 15 14 11 18 18 C 1.50699 * 109.46767 * 179.97438 * 15 14 11 19 19 H 1.07994 * 120.00189 * 0.02562 * 18 15 14 20 20 C 1.37887 * 119.99717 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00076 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99779 * 180.02562 * 20 18 15 23 23 H 1.48508 * 109.46944 * 60.00228 * 22 20 18 24 24 H 1.48500 * 109.46764 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47430 * 300.00202 * 22 20 18 26 26 H 1.08997 * 109.47617 * 186.20673 * 1 2 3 27 27 H 1.09003 * 109.46992 * 306.20894 * 1 2 3 28 28 H 1.09004 * 109.47103 * 66.20590 * 1 2 3 29 29 H 1.09001 * 109.47157 * 239.99626 * 2 1 3 30 30 H 1.08998 * 109.46912 * 120.00090 * 2 1 3 31 31 H 1.09006 * 109.47218 * 185.87816 * 4 3 2 32 32 H 1.09000 * 109.47371 * 305.88006 * 4 3 2 33 33 H 1.09003 * 110.90728 * 338.63375 * 7 5 4 34 34 H 1.08996 * 110.90990 * 102.24016 * 7 5 4 35 35 H 1.09002 * 110.61298 * 278.51774 * 8 7 5 36 36 H 1.09000 * 110.61617 * 155.52453 * 8 7 5 37 37 H 1.09007 * 109.87895 * 267.08836 * 10 9 8 38 38 H 1.09001 * 110.00519 * 146.01107 * 10 9 8 39 39 H 1.08999 * 109.46632 * 60.00094 * 14 11 3 40 40 H 1.09003 * 109.47126 * 300.00128 * 14 11 3 41 41 H 1.09001 * 109.47488 * 60.00066 * 16 15 14 42 42 H 1.08998 * 109.47436 * 180.02562 * 16 15 14 43 43 H 1.09008 * 109.47141 * 299.99807 * 16 15 14 44 44 H 1.09003 * 109.47257 * 59.99410 * 17 15 14 45 45 H 1.08998 * 109.47068 * 179.97438 * 17 15 14 46 46 H 1.09004 * 109.46828 * 300.00004 * 17 15 14 47 47 H 0.96992 * 120.00046 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1998 2.0939 -1.2670 5 6 0.8387 2.3042 -1.9334 6 1 0.3618 1.3451 -2.1358 7 6 0.9951 3.1210 -3.2392 8 6 -0.2306 4.0678 -3.1785 9 8 -0.3394 4.3886 -1.7750 10 6 -0.0668 3.1801 -1.0460 11 16 2.3652 2.1368 1.4322 12 8 1.5422 1.4774 2.3846 13 8 2.1953 3.5189 1.1493 14 6 4.1139 1.7585 1.7316 15 6 4.5594 2.4099 3.0423 16 6 4.3745 3.9256 2.9473 17 6 3.7149 1.8644 4.1957 18 6 6.0120 2.0951 3.2913 19 1 6.5624 1.4912 2.5852 20 6 6.6382 2.5780 4.4209 21 7 5.9678 3.3129 5.2811 22 14 8.4389 2.1884 4.7292 23 1 9.2587 2.7185 3.6100 24 1 8.8713 2.8206 6.0015 25 1 8.6185 0.7172 4.8207 26 1 -0.3634 -1.0216 0.1111 27 1 -0.3633 0.6071 0.8292 28 1 -0.3633 0.4146 -0.9403 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.6643 3.0614 -1.0763 32 1 2.8400 1.5070 -1.9256 33 1 1.9256 3.6887 -3.2338 34 1 0.9422 2.4716 -4.1129 35 1 -1.1282 3.5563 -3.5261 36 1 -0.0493 4.9684 -3.7652 37 1 -0.9990 2.6557 -0.8359 38 1 0.4446 3.4151 -0.1125 39 1 4.7155 2.1475 0.9101 40 1 4.2457 0.6786 1.7989 41 1 3.3238 4.1529 2.7675 42 1 4.6923 4.3897 3.8810 43 1 4.9762 4.3143 2.1256 44 1 3.8466 0.7844 4.2634 45 1 4.0326 2.3281 5.1296 46 1 2.6641 2.0916 4.0158 47 1 6.4084 3.6530 6.0754 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590745265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:26 Heat of formation + Delta-G solvation = -139.949515 kcal Electronic energy + Delta-G solvation = -27432.631456 eV Core-core repulsion = 23741.942448 eV Total energy + Delta-G solvation = -3690.689008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.57594 -38.20073 -38.15309 -37.79938 -36.82872 -33.64512 -33.54689 -31.37467 -30.10690 -28.30833 -27.72245 -27.26760 -26.35751 -24.01704 -23.09162 -21.43807 -21.27946 -19.72898 -18.92156 -17.95833 -17.55016 -17.32937 -17.03621 -16.72959 -16.54834 -15.92870 -15.84784 -15.28093 -14.79305 -14.69469 -14.56675 -14.45330 -14.06216 -13.90917 -13.69913 -13.62926 -13.25042 -12.97690 -12.96468 -12.84968 -12.80495 -12.64030 -12.51407 -12.46801 -12.23247 -12.19327 -12.13807 -11.96684 -11.87850 -11.70536 -11.59096 -11.36023 -11.28987 -10.70141 -10.55368 -10.42364 -9.94611 -8.03881 -6.23238 -0.63894 1.44962 1.45156 1.52747 1.80510 2.43604 2.89181 3.07709 3.17736 3.24647 3.50649 3.74688 3.87622 3.94751 4.07604 4.13257 4.28160 4.32208 4.37400 4.43859 4.46647 4.57258 4.65279 4.74781 4.79134 4.83289 4.83579 4.87337 4.92687 4.93441 4.97172 5.02598 5.05938 5.08918 5.25136 5.27606 5.36118 5.45700 5.47591 5.62569 5.74715 5.94249 6.00647 6.09145 6.32253 6.81338 7.45211 8.95851 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022729 B = 0.003863 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.630044 B = 7245.777199 C = 7532.271752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.112 3.888 3 N -0.998 5.998 4 C 0.119 3.881 5 C -0.132 4.132 6 H 0.116 0.884 7 C -0.142 4.142 8 C 0.034 3.966 9 O -0.411 6.411 10 C 0.034 3.966 11 S 2.601 3.399 12 O -0.986 6.986 13 O -0.984 6.984 14 C -0.588 4.588 15 C 0.068 3.932 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.519 4.519 19 H 0.063 0.937 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.955 3.045 23 H -0.271 1.271 24 H -0.287 1.287 25 H -0.270 1.270 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.030 0.970 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 -7.122 -19.286 22.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.012 4.012 3 N -0.836 5.836 4 C -0.005 4.005 5 C -0.152 4.152 6 H 0.134 0.866 7 C -0.180 4.180 8 C -0.042 4.042 9 O -0.330 6.330 10 C -0.043 4.043 11 S 2.700 3.300 12 O -0.976 6.976 13 O -0.974 6.974 14 C -0.720 4.720 15 C 0.066 3.934 16 C -0.216 4.216 17 C -0.216 4.216 18 C -0.558 4.558 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.781 3.219 23 H -0.196 1.196 24 H -0.213 1.213 25 H -0.196 1.196 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.049 0.951 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.721 -6.335 -18.518 21.853 hybrid contribution 1.433 -0.238 0.719 1.621 sum -8.287 -6.572 -17.799 20.704 Atomic orbital electron populations 1.22444 0.96050 1.03196 1.02146 1.21488 0.94864 0.80215 1.04673 1.57546 1.80532 1.24602 1.20970 1.21654 0.97116 0.97380 0.84395 1.23060 0.96355 1.00671 0.95112 0.86592 1.23204 0.99194 0.98279 0.97335 1.23844 0.98120 1.00305 0.81943 1.88875 1.92048 1.32837 1.19280 1.23472 0.98618 0.85804 0.96430 1.05171 0.78058 0.73683 0.73102 1.93496 1.66183 1.76375 1.61545 1.93506 1.86314 1.33712 1.83893 1.30518 1.22307 1.11136 1.08053 1.17925 0.96298 0.91485 0.87676 1.22189 0.98215 0.98676 1.02524 1.22190 0.96409 0.99952 1.03032 1.21266 0.94801 1.32711 1.07070 0.91842 1.25706 1.01919 0.94787 0.95814 1.69940 1.37445 1.35276 1.12053 0.85657 0.80389 0.78533 0.77328 1.19617 1.21308 1.19555 0.89708 0.94741 0.90663 0.86440 0.90752 0.90583 0.86795 0.90164 0.86662 0.90802 0.87983 0.92410 0.91777 0.84827 0.84769 0.95050 0.91154 0.94192 0.94123 0.91113 0.95103 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 9.61 71.98 0.69 -2.72 16 2 C 0.11 2.15 5.76 86.38 0.50 2.65 16 3 N -1.00 -24.86 2.44 -515.80 -1.26 -26.12 16 4 C 0.12 2.41 4.92 86.38 0.43 2.84 16 5 C -0.13 -2.40 2.45 -9.80 -0.02 -2.42 16 6 H 0.12 1.52 5.73 -2.39 -0.01 1.51 16 7 C -0.14 -1.97 6.71 31.90 0.21 -1.76 16 8 C 0.03 0.60 7.72 72.67 0.56 1.16 16 9 O -0.41 -11.92 11.52 -148.98 -1.72 -13.63 16 10 C 0.03 0.92 6.79 72.35 0.49 1.41 16 11 S 2.60 95.29 4.12 -56.49 -0.23 95.06 16 12 O -0.99 -41.01 14.17 -127.65 -1.81 -42.82 16 13 O -0.98 -41.40 12.22 -127.65 -1.56 -42.96 16 14 C -0.59 -22.46 5.12 71.98 0.37 -22.09 16 15 C 0.07 3.34 0.52 -52.93 -0.03 3.31 16 16 C -0.16 -8.04 7.78 71.98 0.56 -7.48 16 17 C -0.16 -7.99 7.77 71.98 0.56 -7.43 16 18 C -0.52 -27.23 8.01 25.60 0.21 -27.02 16 19 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 20 C 0.02 0.92 5.15 84.66 0.44 1.35 16 21 N -0.91 -50.88 9.35 21.45 0.20 -50.68 16 22 Si 0.96 42.13 29.54 68.60 2.03 44.16 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 27 H 0.03 0.88 7.68 -2.39 -0.02 0.86 16 28 H 0.07 1.15 5.02 -2.39 -0.01 1.14 16 29 H 0.12 1.31 8.09 -2.39 -0.02 1.29 16 30 H 0.07 1.55 7.68 -2.39 -0.02 1.53 16 31 H 0.08 1.86 7.00 -2.38 -0.02 1.85 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.16 7.87 -2.39 -0.02 1.15 16 34 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.45 7.93 -2.38 -0.02 1.43 16 38 H 0.06 2.22 4.96 -2.39 -0.01 2.21 16 39 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 40 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 41 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 42 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 43 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 46 H 0.03 1.49 5.47 -2.39 -0.01 1.48 16 47 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -71.45 357.36 1.56 -69.89 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.95 Total: 25.32 kcal Atomic # 6 Polarization: -63.18 SS G_CDS: 4.96 Total: -58.22 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.06 Total: -76.80 kcal Atomic # 8 Polarization: -94.33 SS G_CDS: -5.09 Total: -99.41 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 95.29 SS G_CDS: -0.23 Total: 95.06 kcal Total: -71.45 1.56 -69.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590745265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.058 kcal (2) G-P(sol) polarization free energy of solvation -71.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds