Wall clock time and date at job start Sat Apr 11 2020 00:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47386 * 2 1 4 4 C 1.35898 * 116.99694 * 180.02562 * 3 2 1 5 5 C 1.38735 * 120.05254 * 179.97438 * 4 3 2 6 6 C 1.38144 * 119.94607 * 179.97438 * 5 4 3 7 7 C 1.38265 * 120.05233 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.94446 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46856 * 270.04618 * 8 7 6 10 10 O 1.21270 * 120.00269 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99402 * 179.97438 * 9 8 7 12 12 C 1.47421 * 125.65326 * 0.02562 * 11 9 8 13 13 C 1.54913 * 104.83159 * 204.09473 * 12 11 9 14 14 C 1.55156 * 101.58195 * 322.98578 * 13 12 11 15 15 O 1.42892 * 110.72017 * 276.96547 * 14 13 12 16 16 C 1.50695 * 110.71939 * 153.86561 * 14 13 12 17 17 H 1.08006 * 120.00400 * 241.45663 * 16 14 13 18 18 C 1.37885 * 119.99912 * 61.45694 * 16 14 13 19 19 N 1.31510 * 119.99883 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00029 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47250 * 120.00037 * 20 18 16 23 23 H 1.48501 * 109.47048 * 240.00014 * 20 18 16 24 24 C 1.47026 * 125.64180 * 179.71467 * 11 9 8 25 25 C 1.38269 * 120.11630 * 0.04162 * 7 6 5 26 26 C 1.38142 * 120.04900 * 359.95598 * 25 7 6 27 27 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46920 * 300.00247 * 1 2 3 29 29 H 1.09006 * 109.47065 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.46920 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.47220 * 120.00123 * 2 1 3 32 32 H 1.08002 * 120.02704 * 359.70561 * 5 4 3 33 33 H 1.08001 * 119.97447 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46722 * 30.04008 * 8 7 6 35 35 H 1.08996 * 109.47584 * 150.04247 * 8 7 6 36 36 H 1.08999 * 110.36634 * 322.92895 * 12 11 9 37 37 H 1.08999 * 110.36917 * 85.25297 * 12 11 9 38 38 H 1.08992 * 111.00651 * 81.06605 * 13 12 11 39 39 H 1.09002 * 111.00116 * 204.87632 * 13 12 11 40 40 H 0.96702 * 114.00251 * 298.54489 * 15 14 13 41 41 H 0.96995 * 119.99896 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.88244 * 298.38798 * 24 11 9 43 43 H 1.08998 * 109.88422 * 59.56273 * 24 11 9 44 44 H 1.07992 * 119.97612 * 179.97438 * 25 7 6 45 45 H 1.08005 * 120.02748 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8067 -0.0011 6 6 5.2551 2.9850 -0.0011 7 6 6.0963 1.8876 0.0000 8 6 7.5903 2.0849 -0.0006 9 6 8.0877 2.1502 -1.4217 10 8 7.3062 2.0462 -2.3431 11 7 9.4013 2.3241 -1.6684 12 6 10.4561 2.4639 -0.6481 13 6 11.5976 3.2317 -1.3604 14 6 11.5316 2.6322 -2.7899 15 8 12.2457 1.3962 -2.8533 16 6 12.0697 3.6093 -3.8032 17 1 11.4288 3.9794 -4.5898 18 6 13.3802 4.0309 -3.7260 19 7 14.1604 3.5806 -2.7678 20 14 14.0475 5.2415 -4.9824 21 1 12.9765 5.5914 -5.9498 22 1 14.5095 6.4705 -4.2887 23 1 15.1869 4.6244 -5.7077 24 6 10.0203 2.3995 -2.9999 25 6 5.5690 0.6094 0.0002 26 6 4.1998 0.4259 0.0003 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2286 3.6641 -0.0059 33 1 5.6695 3.9824 -0.0020 34 1 7.8341 3.0151 0.5127 35 1 8.0673 1.2505 0.5134 36 1 10.0873 3.0364 0.2029 37 1 10.8033 1.4826 -0.3244 38 1 11.3973 4.3029 -1.3762 39 1 12.5599 3.0232 -0.8927 40 1 13.1884 1.4758 -2.6528 41 1 15.0822 3.8774 -2.7133 42 1 9.8583 1.4652 -3.5374 43 1 9.5935 3.2311 -3.5606 44 1 6.2281 -0.2461 0.0006 45 1 3.7884 -0.5728 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:31 Heat of formation + Delta-G solvation = -102.745452 kcal Electronic energy + Delta-G solvation = -26256.589763 eV Core-core repulsion = 22432.070093 eV Total energy + Delta-G solvation = -3824.519670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33473 -39.46118 -37.90809 -36.97474 -34.30693 -32.73296 -32.23575 -31.45589 -30.93134 -29.69479 -28.44723 -26.90904 -24.88670 -24.19488 -22.51989 -22.12365 -21.24249 -19.73772 -18.71902 -18.36464 -17.26630 -16.56881 -16.30220 -16.19117 -15.66450 -15.24105 -14.95654 -14.73480 -14.29478 -14.20759 -13.86176 -13.60107 -13.53229 -13.34596 -13.01717 -12.87620 -12.42475 -12.11332 -12.06061 -11.93005 -11.73210 -11.58378 -11.43362 -11.37495 -11.34239 -10.92407 -10.88530 -10.81473 -10.63357 -10.46950 -10.13101 -9.47294 -9.31830 -8.99782 -8.69689 -8.24455 -8.10265 -8.00113 -6.30795 -4.37929 1.34478 1.38908 3.02451 3.08936 3.17679 3.26873 3.31719 3.47925 3.86800 4.25822 4.60523 4.61229 4.76949 4.81363 4.83082 4.93920 4.95667 5.09170 5.15712 5.24718 5.33634 5.45473 5.49917 5.55006 5.60247 5.68095 5.72781 5.74615 5.90196 6.00057 6.01184 6.17331 6.25928 6.31802 6.44686 6.62436 6.69395 6.72929 6.89607 6.96596 7.27887 7.31975 7.33448 7.71508 8.00878 8.12738 8.63688 8.67506 9.28392 9.37383 10.76806 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.002261 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.746466 B =12383.433755 C =12558.728000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.123 3.877 5 C -0.151 4.151 6 C -0.065 4.065 7 C -0.095 4.095 8 C -0.094 4.094 9 C 0.521 3.479 10 O -0.547 6.547 11 N -0.610 5.610 12 C 0.094 3.906 13 C -0.134 4.134 14 C 0.246 3.754 15 O -0.586 6.586 16 C -0.533 4.533 17 H 0.064 0.936 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.123 3.877 25 C -0.065 4.065 26 C -0.207 4.207 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.382 0.618 41 H 0.267 0.733 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.338 -4.936 10.886 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.079 3.921 5 C -0.169 4.169 6 C -0.083 4.083 7 C -0.095 4.095 8 C -0.134 4.134 9 C 0.309 3.691 10 O -0.425 6.425 11 N -0.343 5.343 12 C -0.029 4.029 13 C -0.173 4.173 14 C 0.206 3.794 15 O -0.394 6.394 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.730 3.270 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.002 3.998 25 C -0.083 4.083 26 C -0.226 4.226 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.232 0.768 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.405 -5.081 10.315 21.702 hybrid contribution 1.248 0.631 -0.464 1.474 sum -17.156 -4.450 9.851 20.278 Atomic orbital electron populations 1.21772 0.92851 1.02771 1.03480 1.22757 0.95746 0.82206 1.01415 1.86045 1.19293 1.29098 1.88889 1.18950 0.81990 0.94231 0.96971 1.20341 0.95052 0.94709 1.06828 1.20805 0.92088 0.98653 0.96761 1.19252 0.94037 0.93346 1.02887 1.20597 0.92754 1.04730 0.95348 1.20090 0.80847 0.77192 0.90936 1.90683 1.54506 1.50863 1.46447 1.48679 1.05771 1.70380 1.09514 1.22524 0.89169 1.00191 0.91005 1.23293 0.96472 0.99039 0.98499 1.19484 0.85784 0.82552 0.91598 1.86134 1.26187 1.33413 1.93716 1.21558 0.96860 1.25505 1.13230 0.91733 1.24987 0.96642 0.95961 0.95477 1.69698 1.07333 1.44578 1.31950 0.86365 0.78961 0.80487 0.81204 1.19577 1.20839 1.20768 1.22051 0.93781 1.01046 0.82964 1.20768 0.94260 0.96662 0.96617 1.21131 0.94208 0.97832 1.09398 0.90444 0.91584 0.91515 0.92026 0.92127 0.85348 0.85432 0.88243 0.88353 0.92094 0.91942 0.91450 0.89365 0.76796 0.92280 0.92225 0.91071 0.85932 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.75 10.14 -19.42 -0.20 -3.95 16 4 C 0.12 1.58 6.69 -39.22 -0.26 1.32 16 5 C -0.15 -1.92 9.99 -39.43 -0.39 -2.31 16 6 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 7 C -0.09 -1.30 4.37 -104.60 -0.46 -1.75 16 8 C -0.09 -1.26 4.83 -29.03 -0.14 -1.41 16 9 C 0.52 9.59 7.84 -10.98 -0.09 9.50 16 10 O -0.55 -12.02 16.36 5.57 0.09 -11.93 16 11 N -0.61 -11.84 3.33 -170.51 -0.57 -12.40 16 12 C 0.09 1.62 6.68 -2.53 -0.02 1.61 16 13 C -0.13 -2.81 5.47 -24.58 -0.13 -2.95 16 14 C 0.25 5.85 0.85 -89.93 -0.08 5.78 16 15 O -0.59 -14.49 13.07 -35.23 -0.46 -14.95 16 16 C -0.53 -13.85 8.22 -34.44 -0.28 -14.13 16 17 H 0.06 1.70 7.58 -52.48 -0.40 1.30 16 18 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 19 N -0.90 -22.65 10.67 55.43 0.59 -22.06 16 20 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 C 0.12 2.78 6.23 -3.05 -0.02 2.76 16 25 C -0.06 -0.84 9.69 -39.60 -0.38 -1.23 16 26 C -0.21 -2.51 9.04 -39.44 -0.36 -2.87 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 32 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.10 1.13 7.79 -51.93 -0.40 0.72 16 35 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.06 0.86 7.48 -51.93 -0.39 0.47 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 39 H 0.09 1.92 7.54 -51.93 -0.39 1.52 16 40 H 0.38 9.40 7.46 45.56 0.34 9.74 16 41 H 0.27 6.47 8.31 -40.82 -0.34 6.14 16 42 H 0.06 1.40 8.07 -51.93 -0.42 0.99 16 43 H 0.07 1.65 7.66 -51.93 -0.40 1.25 16 44 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.12 1.21 6.30 -52.48 -0.33 0.88 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -30.10 371.41 -8.59 -38.69 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.12 Total: 10.97 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.50 Total: -5.09 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.02 Total: -34.46 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.57 Total: -30.83 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.10 -8.59 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.056 kcal (2) G-P(sol) polarization free energy of solvation -30.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds