Wall clock time and date at job start Sat Apr 11 2020 00:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47386 * 2 1 4 4 C 1.35898 * 116.99694 * 180.02562 * 3 2 1 5 5 C 1.38735 * 120.05254 * 179.97438 * 4 3 2 6 6 C 1.38144 * 119.94607 * 179.97438 * 5 4 3 7 7 C 1.38265 * 120.05233 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.94446 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46856 * 270.04618 * 8 7 6 10 10 O 1.21270 * 120.00269 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99402 * 179.97438 * 9 8 7 12 12 C 1.47421 * 125.65326 * 0.02562 * 11 9 8 13 13 C 1.54913 * 104.83159 * 204.09473 * 12 11 9 14 14 C 1.55156 * 101.58195 * 322.98578 * 13 12 11 15 15 O 1.42892 * 110.72017 * 276.96547 * 14 13 12 16 16 C 1.50695 * 110.71939 * 153.86561 * 14 13 12 17 17 H 1.08006 * 120.00400 * 241.45663 * 16 14 13 18 18 C 1.37885 * 119.99912 * 61.45694 * 16 14 13 19 19 N 1.31510 * 119.99883 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00029 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47250 * 120.00037 * 20 18 16 23 23 H 1.48501 * 109.47048 * 240.00014 * 20 18 16 24 24 C 1.47026 * 125.64180 * 179.71467 * 11 9 8 25 25 C 1.38269 * 120.11630 * 0.04162 * 7 6 5 26 26 C 1.38142 * 120.04900 * 359.95598 * 25 7 6 27 27 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46920 * 300.00247 * 1 2 3 29 29 H 1.09006 * 109.47065 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.46920 * 239.99753 * 2 1 3 31 31 H 1.08998 * 109.47220 * 120.00123 * 2 1 3 32 32 H 1.08002 * 120.02704 * 359.70561 * 5 4 3 33 33 H 1.08001 * 119.97447 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.46722 * 30.04008 * 8 7 6 35 35 H 1.08996 * 109.47584 * 150.04247 * 8 7 6 36 36 H 1.08999 * 110.36634 * 322.92895 * 12 11 9 37 37 H 1.08999 * 110.36917 * 85.25297 * 12 11 9 38 38 H 1.08992 * 111.00651 * 81.06605 * 13 12 11 39 39 H 1.09002 * 111.00116 * 204.87632 * 13 12 11 40 40 H 0.96702 * 114.00251 * 298.54489 * 15 14 13 41 41 H 0.96995 * 119.99896 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.88244 * 298.38798 * 24 11 9 43 43 H 1.08998 * 109.88422 * 59.56273 * 24 11 9 44 44 H 1.07992 * 119.97612 * 179.97438 * 25 7 6 45 45 H 1.08005 * 120.02748 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8853 2.8067 -0.0011 6 6 5.2551 2.9850 -0.0011 7 6 6.0963 1.8876 0.0000 8 6 7.5903 2.0849 -0.0006 9 6 8.0877 2.1502 -1.4217 10 8 7.3062 2.0462 -2.3431 11 7 9.4013 2.3241 -1.6684 12 6 10.4561 2.4639 -0.6481 13 6 11.5976 3.2317 -1.3604 14 6 11.5316 2.6322 -2.7899 15 8 12.2457 1.3962 -2.8533 16 6 12.0697 3.6093 -3.8032 17 1 11.4288 3.9794 -4.5898 18 6 13.3802 4.0309 -3.7260 19 7 14.1604 3.5806 -2.7678 20 14 14.0475 5.2415 -4.9824 21 1 12.9765 5.5914 -5.9498 22 1 14.5095 6.4705 -4.2887 23 1 15.1869 4.6244 -5.7077 24 6 10.0203 2.3995 -2.9999 25 6 5.5690 0.6094 0.0002 26 6 4.1998 0.4259 0.0003 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.2286 3.6641 -0.0059 33 1 5.6695 3.9824 -0.0020 34 1 7.8341 3.0151 0.5127 35 1 8.0673 1.2505 0.5134 36 1 10.0873 3.0364 0.2029 37 1 10.8033 1.4826 -0.3244 38 1 11.3973 4.3029 -1.3762 39 1 12.5599 3.0232 -0.8927 40 1 13.1884 1.4758 -2.6528 41 1 15.0822 3.8774 -2.7133 42 1 9.8583 1.4652 -3.5374 43 1 9.5935 3.2311 -3.5606 44 1 6.2281 -0.2461 0.0006 45 1 3.7884 -0.5728 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:30 Heat of formation + Delta-G solvation = -121.648944 kcal Electronic energy + Delta-G solvation = -26257.409480 eV Core-core repulsion = 22432.070093 eV Total energy + Delta-G solvation = -3825.339387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37553 -40.79936 -39.20816 -38.29345 -36.06023 -34.20755 -33.63436 -32.35060 -31.82048 -31.26765 -30.07711 -28.18475 -26.57046 -24.95377 -23.97866 -23.08015 -22.24536 -21.46504 -20.16376 -19.23328 -19.14566 -18.05406 -17.26026 -17.03364 -16.92493 -16.88377 -16.51663 -16.02127 -15.89952 -15.34240 -15.20522 -14.80020 -14.46976 -14.40855 -14.24972 -13.91405 -13.84435 -13.39750 -13.34463 -13.23491 -13.11247 -12.86138 -12.78710 -12.67431 -12.53151 -12.48351 -12.38744 -12.26602 -11.96044 -11.67019 -11.62453 -11.26016 -10.89266 -10.62274 -10.13189 -9.93777 -9.58819 -9.05716 -8.24943 -6.38753 0.39751 0.41977 1.39311 1.44037 1.53711 1.67428 2.08247 2.26861 2.39727 2.81790 3.00550 3.67578 3.78182 3.81691 3.94252 3.97985 4.03420 4.04818 4.12560 4.31211 4.33519 4.35308 4.41593 4.47574 4.52250 4.60819 4.64141 4.71647 4.75011 4.90525 4.93494 4.94888 5.08957 5.19373 5.19807 5.26148 5.32296 5.38817 5.48953 5.56047 5.65718 5.77299 5.82542 6.09246 6.46439 6.61620 6.69046 7.20103 7.31459 7.41233 8.81071 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.033697 B = 0.002261 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.746466 B =12383.433755 C =12558.728000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.114 3.886 5 C -0.165 4.165 6 C -0.074 4.074 7 C -0.114 4.114 8 C -0.082 4.082 9 C 0.518 3.482 10 O -0.589 6.589 11 N -0.613 5.613 12 C 0.103 3.897 13 C -0.126 4.126 14 C 0.234 3.766 15 O -0.593 6.593 16 C -0.562 4.562 17 H 0.048 0.952 18 C 0.038 3.962 19 N -0.903 5.903 20 Si 0.957 3.043 21 H -0.278 1.278 22 H -0.274 1.274 23 H -0.278 1.278 24 C 0.130 3.870 25 C -0.076 4.076 26 C -0.212 4.212 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.380 0.620 41 H 0.272 0.728 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.135 0.865 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.817 -5.139 12.660 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.248 6.248 4 C 0.069 3.931 5 C -0.184 4.184 6 C -0.092 4.092 7 C -0.115 4.115 8 C -0.121 4.121 9 C 0.309 3.691 10 O -0.470 6.470 11 N -0.346 5.346 12 C -0.019 4.019 13 C -0.164 4.164 14 C 0.194 3.806 15 O -0.402 6.402 16 C -0.601 4.601 17 H 0.066 0.934 18 C -0.163 4.163 19 N -0.542 5.542 20 Si 0.783 3.217 21 H -0.203 1.203 22 H -0.199 1.199 23 H -0.204 1.204 24 C 0.006 3.994 25 C -0.094 4.094 26 C -0.230 4.230 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.229 0.771 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.153 0.847 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.885 -5.291 12.123 23.057 hybrid contribution 1.331 0.650 -1.062 1.823 sum -17.555 -4.641 11.060 21.261 Atomic orbital electron populations 1.21803 0.91336 1.04196 1.03193 1.23060 0.97004 0.80874 1.02139 1.86040 1.18752 1.31245 1.88716 1.19160 0.82664 0.94534 0.96712 1.20584 0.95372 0.95379 1.07027 1.21034 0.92312 0.99271 0.96578 1.19411 0.94313 0.93824 1.03920 1.20622 0.92558 1.07263 0.91634 1.21068 0.79765 0.75487 0.92771 1.90662 1.55392 1.52551 1.48400 1.48756 1.06724 1.70718 1.08422 1.22576 0.87284 1.00958 0.91069 1.23070 0.97751 0.98677 0.96937 1.19613 0.85984 0.81964 0.93057 1.86119 1.26071 1.34072 1.93916 1.21747 0.97507 1.26854 1.13964 0.93407 1.25554 0.96649 0.97168 0.96954 1.69743 1.07511 1.44674 1.32300 0.85529 0.78025 0.78953 0.79214 1.20290 1.19946 1.20408 1.21733 0.93532 0.99239 0.84868 1.21039 0.94904 0.97009 0.96430 1.21387 0.94026 0.98769 1.08837 0.88150 0.91560 0.92101 0.91784 0.90843 0.84351 0.84258 0.85475 0.85663 0.87622 0.90730 0.92473 0.90148 0.77056 0.91873 0.94256 0.92752 0.84709 0.83663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.04 0.66 5.46 71.98 0.39 1.05 16 3 O -0.33 -7.52 10.14 -92.40 -0.94 -8.46 16 4 C 0.11 2.82 6.69 22.51 0.15 2.97 16 5 C -0.17 -4.08 9.99 22.37 0.22 -3.86 16 6 C -0.07 -1.84 9.69 22.25 0.22 -1.62 16 7 C -0.11 -2.92 4.37 -19.85 -0.09 -3.00 16 8 C -0.08 -1.94 4.83 29.10 0.14 -1.80 16 9 C 0.52 18.37 7.84 87.66 0.69 19.05 16 10 O -0.59 -25.95 16.36 -3.00 -0.05 -26.00 16 11 N -0.61 -23.11 3.33 -811.76 -2.70 -25.81 16 12 C 0.10 3.29 6.68 86.86 0.58 3.87 16 13 C -0.13 -5.16 5.47 31.99 0.17 -4.98 16 14 C 0.23 11.25 0.85 -10.35 -0.01 11.25 16 15 O -0.59 -29.66 13.07 -148.98 -1.95 -31.60 16 16 C -0.56 -29.82 8.22 25.60 0.21 -29.61 16 17 H 0.05 2.61 7.58 -2.91 -0.02 2.59 16 18 C 0.04 1.95 5.28 84.66 0.45 2.40 16 19 N -0.90 -45.32 10.67 21.45 0.23 -45.09 16 20 Si 0.96 41.29 29.54 68.60 2.03 43.32 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.13 5.97 6.23 86.73 0.54 6.51 16 25 C -0.08 -1.84 9.69 22.25 0.22 -1.63 16 26 C -0.21 -4.84 9.04 22.36 0.20 -4.63 16 27 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 31 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 32 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.13 2.34 7.79 -2.39 -0.02 2.32 16 35 H 0.13 2.34 8.08 -2.39 -0.02 2.32 16 36 H 0.11 2.49 7.48 -2.39 -0.02 2.47 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 2.43 8.04 -2.39 -0.02 2.41 16 39 H 0.08 3.42 7.54 -2.39 -0.02 3.40 16 40 H 0.38 18.88 7.46 -74.06 -0.55 18.33 16 41 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 42 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 43 H 0.05 2.63 7.66 -2.39 -0.02 2.61 16 44 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 45 H 0.15 2.55 6.30 -2.91 -0.02 2.54 16 Total: -1.00 -65.96 371.41 1.89 -64.07 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.44 Total: 34.46 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 4.83 Total: -4.88 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -2.47 Total: -70.90 kcal Atomic # 8 Polarization: -63.13 SS G_CDS: -2.93 Total: -66.06 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -65.96 1.89 -64.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.580 kcal (2) G-P(sol) polarization free energy of solvation -65.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds