Wall clock time and date at job start Sat Apr 11 2020 00:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47096 * 2 1 4 4 C 1.42898 * 114.00220 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.90531 * 21.74575 * 4 3 2 6 6 C 1.53782 * 113.61663 * 250.49829 * 4 3 2 7 7 C 1.53779 * 87.07975 * 220.01567 * 6 4 3 8 8 H 1.09006 * 113.61123 * 140.06736 * 7 6 4 9 9 N 1.46502 * 113.61385 * 270.88266 * 7 6 4 10 10 C 1.34780 * 120.00065 * 255.49472 * 9 7 6 11 11 O 1.21613 * 119.99788 * 0.02562 * 10 9 7 12 12 C 1.47429 * 120.00022 * 180.02562 * 10 9 7 13 13 C 1.39223 * 120.28274 * 354.15676 * 12 10 9 14 14 C 1.38222 * 120.09379 * 179.97438 * 13 12 10 15 15 C 1.38828 * 120.67161 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.57343 * 359.97438 * 15 14 13 17 17 C 1.40706 * 119.88340 * 0.02562 * 16 15 14 18 18 C 1.40886 * 120.33065 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99939 * 145.81334 * 18 17 16 20 20 C 1.40278 * 120.00005 * 325.81437 * 18 17 16 21 21 N 1.30624 * 119.99658 * 350.76499 * 20 18 17 22 22 Si 1.86799 * 119.99982 * 170.76214 * 20 18 17 23 23 H 1.48497 * 109.46943 * 60.00051 * 22 20 18 24 24 H 1.48501 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47000 * 300.00076 * 22 20 18 26 26 C 1.53776 * 113.61547 * 152.99875 * 4 3 2 27 27 H 1.08993 * 113.61520 * 25.43707 * 26 4 3 28 28 O 1.42905 * 113.61517 * 254.53128 * 26 4 3 29 29 C 1.42897 * 113.99930 * 112.50504 * 28 26 4 30 30 H 1.09004 * 109.47068 * 299.99773 * 1 2 3 31 31 H 1.08998 * 109.47802 * 59.99815 * 1 2 3 32 32 H 1.09000 * 109.47279 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46951 * 239.99806 * 2 1 3 34 34 H 1.08999 * 109.47064 * 120.00275 * 2 1 3 35 35 H 1.09002 * 113.61309 * 105.46800 * 6 4 3 36 36 H 1.09000 * 113.61608 * 334.56420 * 6 4 3 37 37 H 0.96995 * 119.99965 * 75.50097 * 9 7 6 38 38 H 1.08000 * 119.95070 * 359.96341 * 13 12 10 39 39 H 1.07999 * 119.66353 * 180.02562 * 14 13 12 40 40 H 1.07998 * 119.71142 * 179.71802 * 15 14 13 41 41 H 1.08003 * 120.05897 * 179.97438 * 16 15 14 42 42 H 0.97002 * 119.99640 * 179.97438 * 21 20 18 43 43 H 1.08991 * 109.47482 * 59.99651 * 29 28 26 44 44 H 1.08999 * 109.47047 * 180.02562 * 29 28 26 45 45 H 1.09005 * 109.46776 * 299.99735 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9276 0.5639 -0.3711 6 6 4.0072 1.9779 1.3289 7 6 4.9914 2.8077 0.4877 8 1 5.1658 3.8091 0.8814 9 7 6.2325 2.0983 0.1672 10 6 7.3716 2.4048 0.8191 11 8 7.3691 3.2700 1.6738 12 6 8.6206 1.6913 0.4961 13 6 8.6072 0.6192 -0.3919 14 6 9.7806 -0.0467 -0.6924 15 6 10.9826 0.3413 -0.1160 16 6 11.0276 1.3971 0.7652 17 6 9.8472 2.0917 1.0880 18 6 9.8825 3.1744 1.9887 19 1 9.2176 4.0141 1.8500 20 6 10.7814 3.1619 3.0656 21 7 11.4557 2.0775 3.3408 22 14 11.0140 4.6958 4.1059 23 1 9.7184 5.0756 4.7243 24 1 12.0113 4.4242 5.1722 25 1 11.4976 5.8072 3.2479 26 6 3.9460 2.7602 -0.6391 27 1 3.2276 3.5791 -0.6030 28 8 4.5123 2.5739 -1.9378 29 6 3.7561 3.1714 -2.9928 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.4886 1.2042 1.9271 36 1 3.3056 2.5830 1.9031 37 1 6.2344 1.4081 -0.5143 38 1 7.6786 0.3072 -0.8465 39 1 9.7623 -0.8772 -1.3825 40 1 11.8894 -0.1928 -0.3583 41 1 11.9671 1.6916 1.2091 42 1 12.0775 2.0690 4.0853 43 1 3.6837 4.2458 -2.8246 44 1 4.2515 2.9849 -3.9456 45 1 2.7558 2.7386 -3.0130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601441561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:31 Heat of formation + Delta-G solvation = -82.917465 kcal Electronic energy + Delta-G solvation = -26994.347392 eV Core-core repulsion = 23170.687528 eV Total energy + Delta-G solvation = -3823.659864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28214 -38.52737 -37.35296 -36.71506 -35.52857 -33.73678 -32.35314 -30.98479 -29.86435 -29.26349 -27.11122 -25.51342 -24.50155 -24.33628 -22.92887 -22.25933 -20.93832 -19.74249 -19.19791 -17.52663 -17.42520 -16.79205 -16.11200 -15.79006 -15.52758 -15.25152 -15.18930 -14.74991 -14.19093 -14.01580 -13.73817 -13.35829 -13.21450 -13.08158 -12.93258 -12.67543 -12.66826 -12.30641 -11.97212 -11.84164 -11.60486 -11.48391 -11.28379 -11.08977 -11.03306 -10.97447 -10.74331 -10.66023 -10.49240 -10.05367 -9.89165 -9.64250 -9.32990 -9.22891 -8.44017 -8.27789 -7.55082 -7.32122 -6.76666 -4.35349 2.39465 2.85730 3.11323 3.17450 3.28028 3.34620 3.77578 4.00326 4.02663 4.14803 4.48570 4.52364 4.69987 4.84729 4.88099 4.97390 5.02347 5.16670 5.19142 5.32230 5.37940 5.41661 5.58509 5.66093 5.67457 5.70237 5.83707 5.94528 5.99657 6.02676 6.05842 6.27207 6.34141 6.66268 6.94714 6.99411 7.07853 7.15894 7.23765 7.35191 7.49888 7.66360 7.92521 8.01861 8.21392 8.43930 8.69652 8.85624 8.93279 9.44383 10.18755 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.003396 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.426045 B = 8242.796617 C = 8902.030168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.378 6.378 4 C 0.050 3.950 5 H 0.093 0.907 6 C -0.171 4.171 7 C 0.141 3.859 8 H 0.108 0.892 9 N -0.722 5.722 10 C 0.568 3.432 11 O -0.538 6.538 12 C -0.260 4.260 13 C -0.055 4.055 14 C -0.246 4.246 15 C -0.095 4.095 16 C -0.149 4.149 17 C 0.147 3.853 18 C -0.416 4.416 19 H 0.105 0.895 20 C 0.070 3.930 21 N -0.794 5.794 22 Si 0.917 3.083 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.263 1.263 26 C 0.060 3.940 27 H 0.102 0.898 28 O -0.368 6.368 29 C 0.031 3.969 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.282 0.718 43 H 0.042 0.958 44 H 0.084 0.916 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 -2.117 -7.211 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.297 6.297 4 C -0.009 4.009 5 H 0.111 0.889 6 C -0.210 4.210 7 C 0.033 3.967 8 H 0.126 0.874 9 N -0.376 5.376 10 C 0.362 3.638 11 O -0.416 6.416 12 C -0.265 4.265 13 C -0.074 4.074 14 C -0.266 4.266 15 C -0.114 4.114 16 C -0.168 4.168 17 C 0.142 3.858 18 C -0.445 4.445 19 H 0.122 0.878 20 C -0.148 4.148 21 N -0.419 5.419 22 Si 0.741 3.259 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.188 1.188 26 C 0.001 3.999 27 H 0.120 0.880 28 O -0.286 6.286 29 C -0.065 4.065 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.165 -1.516 -6.443 16.546 hybrid contribution -0.053 -0.096 0.160 0.194 sum -15.218 -1.612 -6.283 16.542 Atomic orbital electron populations 1.21745 0.93939 1.02137 1.02963 1.22494 0.95357 0.84097 1.00175 1.87897 1.20790 1.26337 1.94656 1.24497 0.80809 0.98893 0.96658 0.88883 1.23814 0.98905 1.01407 0.96888 1.21681 0.84081 0.97886 0.93009 0.87374 1.45562 1.07308 1.41865 1.42822 1.18450 0.82732 0.82337 0.80292 1.90673 1.85423 1.32922 1.32567 1.19422 0.92444 1.03266 1.11364 1.20652 0.96198 0.94761 0.95784 1.20277 0.93448 1.04661 1.08172 1.20797 0.96191 0.97080 0.97359 1.21349 0.98547 0.98068 0.98818 1.17469 0.88986 0.90400 0.88901 1.20130 1.14355 1.04032 1.05936 0.87771 1.26114 0.93224 0.97219 0.98290 1.69711 1.19498 1.27374 1.25351 0.86217 0.78972 0.81656 0.79056 1.18614 1.20516 1.18791 1.24590 0.95463 0.96970 0.82881 0.87975 1.87959 1.49515 1.76617 1.14506 1.22794 0.95905 0.97000 0.90841 0.91880 0.92029 0.91228 0.93431 0.93263 0.89815 0.88513 0.76747 0.89264 0.89155 0.89129 0.86497 0.90709 0.93970 0.89719 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.53 6.51 37.16 0.24 0.78 16 3 O -0.38 -4.54 10.35 -35.23 -0.36 -4.90 16 4 C 0.05 0.62 4.01 -25.92 -0.10 0.51 16 5 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 6 C -0.17 -2.32 7.71 -25.92 -0.20 -2.52 16 7 C 0.14 2.20 4.24 -67.12 -0.28 1.92 16 8 H 0.11 1.83 7.53 -51.93 -0.39 1.44 16 9 N -0.72 -13.20 4.95 -54.09 -0.27 -13.47 16 10 C 0.57 13.25 7.72 -12.52 -0.10 13.15 16 11 O -0.54 -14.14 13.23 5.27 0.07 -14.07 16 12 C -0.26 -6.42 5.92 -104.37 -0.62 -7.04 16 13 C -0.06 -1.20 9.52 -39.22 -0.37 -1.57 16 14 C -0.25 -5.30 10.03 -39.37 -0.39 -5.70 16 15 C -0.10 -2.17 10.01 -39.60 -0.40 -2.57 16 16 C -0.15 -3.81 8.62 -38.88 -0.34 -4.14 16 17 C 0.15 3.96 5.51 -106.54 -0.59 3.38 16 18 C -0.42 -11.51 7.68 -37.81 -0.29 -11.80 16 19 H 0.10 2.98 5.92 -52.49 -0.31 2.67 16 20 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 21 N -0.79 -20.75 11.14 55.56 0.62 -20.13 16 22 Si 0.92 19.80 29.57 -169.99 -5.03 14.77 16 23 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 26 C 0.06 0.78 4.04 -25.92 -0.10 0.67 16 27 H 0.10 1.17 7.87 -51.93 -0.41 0.76 16 28 O -0.37 -4.96 9.95 -35.23 -0.35 -5.32 16 29 C 0.03 0.31 10.85 101.05 1.10 1.41 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 6.67 6.34 -40.82 -0.26 6.41 16 38 H 0.09 1.64 6.44 -52.49 -0.34 1.30 16 39 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.12 3.05 6.59 -52.48 -0.35 2.71 16 42 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -30.41 372.85 -8.53 -38.94 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.67 Total: 11.14 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.16 Total: -12.59 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.35 Total: -33.60 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.65 Total: -24.29 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.41 -8.53 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601441561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.982 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds