Wall clock time and date at job start Sat Apr 11 2020 00:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47534 * 2 1 4 4 C 1.42893 * 114.00301 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47253 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.51086 * 54.89729 * 5 4 3 7 7 C 1.53295 * 109.51452 * 175.00103 * 5 4 3 8 8 N 1.47144 * 108.38461 * 172.27826 * 7 5 4 9 9 C 1.34777 * 120.98645 * 129.44106 * 8 7 5 10 10 O 1.21612 * 119.99677 * 4.15689 * 9 8 7 11 11 C 1.47423 * 120.00465 * 184.15534 * 9 8 7 12 12 C 1.39229 * 120.28208 * 307.84725 * 11 9 8 13 13 C 1.38226 * 120.09261 * 179.97438 * 12 11 9 14 14 C 1.38827 * 120.67361 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.57094 * 359.97438 * 14 13 12 16 16 C 1.40703 * 119.88394 * 359.97438 * 15 14 13 17 17 C 1.40887 * 120.32852 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00279 * 143.67206 * 17 16 15 19 19 C 1.40281 * 119.99794 * 323.66646 * 17 16 15 20 20 N 1.30622 * 120.00018 * 169.52720 * 19 17 16 21 21 Si 1.86799 * 119.99874 * 349.52607 * 19 17 16 22 22 H 1.48498 * 109.47246 * 90.77300 * 21 19 17 23 23 H 1.48502 * 109.47012 * 210.77475 * 21 19 17 24 24 H 1.48508 * 109.46973 * 330.77129 * 21 19 17 25 25 C 1.47151 * 118.03541 * 309.71253 * 8 7 5 26 26 C 1.52880 * 108.60649 * 50.22825 * 25 8 7 27 27 O 1.42957 * 109.30127 * 307.93502 * 26 25 8 28 28 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47083 * 300.00012 * 1 2 3 30 30 H 1.08997 * 109.46966 * 60.00579 * 1 2 3 31 31 H 1.08999 * 109.47541 * 239.99916 * 2 1 3 32 32 H 1.09005 * 109.47082 * 120.00055 * 2 1 3 33 33 H 1.09002 * 109.47525 * 60.00044 * 4 3 2 34 34 H 1.09003 * 109.47214 * 300.00117 * 4 3 2 35 35 H 1.09003 * 109.68139 * 52.55325 * 7 5 4 36 36 H 1.08999 * 109.71077 * 292.01752 * 7 5 4 37 37 H 1.07995 * 119.95420 * 359.97222 * 12 11 9 38 38 H 1.08000 * 119.66067 * 179.97438 * 13 12 11 39 39 H 1.08002 * 119.70937 * 179.72711 * 14 13 12 40 40 H 1.08005 * 120.05761 * 179.97438 * 15 14 13 41 41 H 0.97002 * 120.00406 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.68616 * 170.00987 * 25 8 7 43 43 H 1.09000 * 109.68439 * 290.56263 * 25 8 7 44 44 H 1.09005 * 109.58404 * 187.91999 * 26 25 8 45 45 H 1.08998 * 109.36542 * 67.81992 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9384 -0.0001 6 1 3.3481 3.4429 0.8399 7 6 5.3482 3.0620 0.1264 8 7 5.7165 4.4739 -0.0633 9 6 6.5132 5.1079 0.8198 10 8 7.0002 4.4934 1.7494 11 6 6.7944 6.5460 0.6588 12 6 7.2631 7.0380 -0.5565 13 6 7.5250 8.3873 -0.7033 14 6 7.3262 9.2663 0.3527 15 6 6.8639 8.8099 1.5657 16 6 6.5886 7.4412 1.7410 17 6 6.1144 6.9638 2.9788 18 1 5.3888 6.1644 3.0071 19 6 6.5849 7.5266 4.1744 20 7 6.0040 7.2338 5.3071 21 14 8.0423 8.6949 4.1468 22 1 7.5560 10.0893 3.9912 23 1 8.7984 8.5733 5.4191 24 1 8.9311 8.3506 3.0079 25 6 5.1844 5.1751 -1.2425 26 6 3.6740 4.9470 -1.3052 27 8 3.4040 3.5455 -1.2239 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8341 0.9764 -0.8892 34 1 3.8333 0.9766 0.8908 35 1 5.8307 2.4510 -0.6364 36 1 5.6630 2.7303 1.1158 37 1 7.4223 6.3645 -1.3855 38 1 7.8887 8.7613 -1.6489 39 1 7.5400 10.3169 0.2222 40 1 6.7126 9.5010 2.3818 41 1 6.3296 7.6227 6.1340 42 1 5.3902 6.2422 -1.1591 43 1 5.6502 4.7805 -2.1455 44 1 3.2839 5.3390 -2.2446 45 1 3.1961 5.4589 -0.4700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601685861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:43 Heat of formation + Delta-G solvation = -99.591355 kcal Electronic energy + Delta-G solvation = -27366.423987 eV Core-core repulsion = 23542.041088 eV Total energy + Delta-G solvation = -3824.382898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06025 -38.57059 -37.68850 -36.91840 -34.31697 -33.62956 -32.75826 -31.05387 -30.61778 -30.03070 -28.10115 -26.03669 -25.04079 -23.25513 -22.90858 -22.31039 -21.32596 -20.69454 -18.81805 -17.50478 -16.94837 -16.86115 -16.74082 -15.84066 -15.61802 -15.27563 -15.23517 -14.81870 -14.64740 -14.21548 -13.96861 -13.65514 -13.52858 -13.32011 -12.85852 -12.69284 -12.63867 -12.43072 -12.06397 -12.00351 -11.76871 -11.56859 -11.49791 -11.40610 -11.04742 -10.93583 -10.90848 -10.56768 -10.39455 -10.06947 -9.89179 -9.83277 -9.69433 -9.29429 -8.89238 -8.15258 -7.83386 -7.70843 -6.98872 -4.58595 2.14963 2.51262 3.06190 3.15904 3.20979 3.28208 3.59357 3.69297 3.80995 3.94041 4.43671 4.86696 4.87688 4.93539 5.05325 5.11158 5.15668 5.20361 5.21908 5.30564 5.35106 5.43281 5.50953 5.57918 5.66954 5.74044 5.77164 5.78945 5.92432 5.92777 5.94864 6.02749 6.09434 6.27092 6.47224 6.71288 6.84439 7.03312 7.09193 7.16268 7.24835 7.34675 7.48436 7.65704 7.90258 7.99386 8.27053 8.48730 8.67062 9.01799 10.02758 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003664 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.978734 B = 7639.405581 C = 8660.609053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.380 6.380 4 C 0.075 3.925 5 C 0.080 3.920 6 H 0.073 0.927 7 C 0.091 3.909 8 N -0.623 5.623 9 C 0.586 3.414 10 O -0.528 6.528 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.248 4.248 14 C -0.065 4.065 15 C -0.229 4.229 16 C 0.123 3.877 17 C -0.418 4.418 18 H 0.091 0.909 19 C 0.085 3.915 20 N -0.800 5.800 21 Si 0.912 3.088 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.243 1.243 25 C 0.070 3.930 26 C 0.048 3.952 27 O -0.373 6.373 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.288 0.712 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -7.743 -11.065 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.002 4.002 5 C 0.022 3.978 6 H 0.091 0.909 7 C -0.033 4.033 8 N -0.359 5.359 9 C 0.378 3.622 10 O -0.403 6.403 11 C -0.241 4.241 12 C -0.069 4.069 13 C -0.267 4.267 14 C -0.084 4.084 15 C -0.248 4.248 16 C 0.119 3.881 17 C -0.446 4.446 18 H 0.109 0.891 19 C -0.135 4.135 20 N -0.423 5.423 21 Si 0.738 3.262 22 H -0.194 1.194 23 H -0.215 1.215 24 H -0.166 1.166 25 C -0.053 4.053 26 C -0.030 4.030 27 O -0.291 6.291 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.385 -8.046 -10.373 14.190 hybrid contribution 0.838 0.440 0.288 0.989 sum -4.547 -7.606 -10.085 13.426 Atomic orbital electron populations 1.21731 0.93804 1.02011 1.03266 1.22453 0.95650 0.84006 0.99919 1.87956 1.20519 1.26048 1.95391 1.22396 0.81969 0.94833 1.01022 1.22429 0.93889 0.92966 0.88562 0.90912 1.21956 0.93617 0.83807 1.03926 1.48126 1.51173 1.10768 1.25876 1.18467 0.76711 0.87219 0.79847 1.90715 1.50666 1.67570 1.31399 1.19407 1.16681 0.90985 0.97058 1.20765 0.96571 0.95005 0.94589 1.20310 1.14192 0.93387 0.98849 1.20750 0.96379 0.97801 0.93458 1.21144 1.10887 0.95251 0.97474 1.17457 0.88080 0.90237 0.92311 1.19441 1.20609 1.15968 0.88571 0.89150 1.26183 0.97543 0.95015 0.94775 1.69544 1.36463 1.36491 0.99800 0.86302 0.81630 0.79693 0.78526 1.19396 1.21537 1.16568 1.22483 0.94264 1.00429 0.88137 1.22934 0.94974 0.82227 1.02856 1.87940 1.82019 1.22037 1.37140 0.91271 0.91812 0.91806 0.93495 0.93481 0.92351 0.91511 0.91392 0.88112 0.88244 0.88303 0.88413 0.87529 0.90178 0.87126 0.91454 0.87889 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.06 0.56 6.66 37.16 0.25 0.81 16 3 O -0.38 -5.13 10.31 -39.66 -0.41 -5.54 16 4 C 0.07 0.93 5.61 37.16 0.21 1.13 16 5 C 0.08 1.19 3.06 -26.58 -0.08 1.11 16 6 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 7 C 0.09 1.43 5.92 -3.54 -0.02 1.41 16 8 N -0.62 -11.36 3.03 -173.80 -0.53 -11.88 16 9 C 0.59 13.33 6.50 -12.52 -0.08 13.25 16 10 O -0.53 -13.90 15.67 5.27 0.08 -13.82 16 11 C -0.24 -5.44 4.98 -104.37 -0.52 -5.96 16 12 C -0.05 -0.99 7.42 -39.22 -0.29 -1.28 16 13 C -0.25 -4.70 10.03 -39.37 -0.39 -5.09 16 14 C -0.07 -1.31 10.01 -39.60 -0.40 -1.71 16 15 C -0.23 -5.27 7.06 -38.89 -0.27 -5.54 16 16 C 0.12 3.10 5.04 -106.54 -0.54 2.56 16 17 C -0.42 -11.52 8.30 -37.81 -0.31 -11.84 16 18 H 0.09 2.71 7.65 -52.49 -0.40 2.31 16 19 C 0.08 2.26 5.47 -17.30 -0.09 2.17 16 20 N -0.80 -21.63 13.92 55.56 0.77 -20.86 16 21 Si 0.91 20.98 24.51 -169.99 -4.17 16.81 16 22 H -0.27 -5.78 6.67 56.52 0.38 -5.41 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.24 -5.78 6.83 56.52 0.39 -5.39 16 25 C 0.07 1.05 5.54 -3.75 -0.02 1.03 16 26 C 0.05 0.66 6.97 37.10 0.26 0.92 16 27 O -0.37 -5.66 10.36 -39.66 -0.41 -6.07 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.72 7.11 -51.93 -0.37 1.35 16 37 H 0.10 1.68 7.22 -52.49 -0.38 1.30 16 38 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.11 2.43 4.95 -52.48 -0.26 2.17 16 41 H 0.29 7.01 8.29 -40.82 -0.34 6.68 16 42 H 0.11 1.74 4.88 -51.93 -0.25 1.48 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -31.34 361.17 -7.90 -39.24 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.76 Total: 4.63 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.93 Total: -7.95 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.25 Total: -32.74 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.74 Total: -25.43 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.17 Total: 16.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.34 -7.90 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601685861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.352 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds