Wall clock time and date at job start Sat Apr 11 2020 00:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.47534 * 2 1 4 4 C 1.42893 * 114.00301 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47253 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.51086 * 54.89729 * 5 4 3 7 7 C 1.53295 * 109.51452 * 175.00103 * 5 4 3 8 8 N 1.47144 * 108.38461 * 172.27826 * 7 5 4 9 9 C 1.34777 * 120.98645 * 129.44106 * 8 7 5 10 10 O 1.21612 * 119.99677 * 4.15689 * 9 8 7 11 11 C 1.47423 * 120.00465 * 184.15534 * 9 8 7 12 12 C 1.39229 * 120.28208 * 307.84725 * 11 9 8 13 13 C 1.38226 * 120.09261 * 179.97438 * 12 11 9 14 14 C 1.38827 * 120.67361 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.57094 * 359.97438 * 14 13 12 16 16 C 1.40703 * 119.88394 * 359.97438 * 15 14 13 17 17 C 1.40887 * 120.32852 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00279 * 143.67206 * 17 16 15 19 19 C 1.40281 * 119.99794 * 323.66646 * 17 16 15 20 20 N 1.30622 * 120.00018 * 169.52720 * 19 17 16 21 21 Si 1.86799 * 119.99874 * 349.52607 * 19 17 16 22 22 H 1.48498 * 109.47246 * 90.77300 * 21 19 17 23 23 H 1.48502 * 109.47012 * 210.77475 * 21 19 17 24 24 H 1.48508 * 109.46973 * 330.77129 * 21 19 17 25 25 C 1.47151 * 118.03541 * 309.71253 * 8 7 5 26 26 C 1.52880 * 108.60649 * 50.22825 * 25 8 7 27 27 O 1.42957 * 109.30127 * 307.93502 * 26 25 8 28 28 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47083 * 300.00012 * 1 2 3 30 30 H 1.08997 * 109.46966 * 60.00579 * 1 2 3 31 31 H 1.08999 * 109.47541 * 239.99916 * 2 1 3 32 32 H 1.09005 * 109.47082 * 120.00055 * 2 1 3 33 33 H 1.09002 * 109.47525 * 60.00044 * 4 3 2 34 34 H 1.09003 * 109.47214 * 300.00117 * 4 3 2 35 35 H 1.09003 * 109.68139 * 52.55325 * 7 5 4 36 36 H 1.08999 * 109.71077 * 292.01752 * 7 5 4 37 37 H 1.07995 * 119.95420 * 359.97222 * 12 11 9 38 38 H 1.08000 * 119.66067 * 179.97438 * 13 12 11 39 39 H 1.08002 * 119.70937 * 179.72711 * 14 13 12 40 40 H 1.08005 * 120.05761 * 179.97438 * 15 14 13 41 41 H 0.97002 * 120.00406 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.68616 * 170.00987 * 25 8 7 43 43 H 1.09000 * 109.68439 * 290.56263 * 25 8 7 44 44 H 1.09005 * 109.58404 * 187.91999 * 26 25 8 45 45 H 1.08998 * 109.36542 * 67.81992 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8255 2.9384 -0.0001 6 1 3.3481 3.4429 0.8399 7 6 5.3482 3.0620 0.1264 8 7 5.7165 4.4739 -0.0633 9 6 6.5132 5.1079 0.8198 10 8 7.0002 4.4934 1.7494 11 6 6.7944 6.5460 0.6588 12 6 7.2631 7.0380 -0.5565 13 6 7.5250 8.3873 -0.7033 14 6 7.3262 9.2663 0.3527 15 6 6.8639 8.8099 1.5657 16 6 6.5886 7.4412 1.7410 17 6 6.1144 6.9638 2.9788 18 1 5.3888 6.1644 3.0071 19 6 6.5849 7.5266 4.1744 20 7 6.0040 7.2338 5.3071 21 14 8.0423 8.6949 4.1468 22 1 7.5560 10.0893 3.9912 23 1 8.7984 8.5733 5.4191 24 1 8.9311 8.3506 3.0079 25 6 5.1844 5.1751 -1.2425 26 6 3.6740 4.9470 -1.3052 27 8 3.4040 3.5455 -1.2239 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8341 0.9764 -0.8892 34 1 3.8333 0.9766 0.8908 35 1 5.8307 2.4510 -0.6364 36 1 5.6630 2.7303 1.1158 37 1 7.4223 6.3645 -1.3855 38 1 7.8887 8.7613 -1.6489 39 1 7.5400 10.3169 0.2222 40 1 6.7126 9.5010 2.3818 41 1 6.3296 7.6227 6.1340 42 1 5.3902 6.2422 -1.1591 43 1 5.6502 4.7805 -2.1455 44 1 3.2839 5.3390 -2.2446 45 1 3.1961 5.4589 -0.4700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601685861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:42 Heat of formation + Delta-G solvation = -121.245678 kcal Electronic energy + Delta-G solvation = -27367.362988 eV Core-core repulsion = 23542.041088 eV Total energy + Delta-G solvation = -3825.321900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54058 -39.98424 -38.88381 -38.49966 -35.89595 -35.43546 -33.86670 -32.42370 -32.13628 -31.47867 -29.38495 -27.56635 -26.61849 -24.61268 -23.76149 -23.67898 -23.03043 -22.07723 -20.39168 -19.36861 -18.46554 -18.06837 -17.76001 -17.43371 -16.87489 -16.62115 -16.53165 -16.18674 -16.07994 -15.79637 -15.51161 -15.22226 -14.80651 -14.52878 -14.28220 -14.17814 -14.03512 -13.81221 -13.58049 -13.40066 -13.13319 -12.81343 -12.74840 -12.65591 -12.44198 -12.28732 -12.15815 -12.00830 -11.94469 -11.74160 -11.63632 -11.22756 -11.09491 -10.64599 -10.59945 -9.67188 -9.49686 -9.44290 -8.91180 -6.57350 0.43078 0.78253 1.20850 1.34555 1.44480 1.74167 2.03799 2.10142 2.53605 2.60818 2.71540 3.38613 3.69494 3.75585 3.84716 3.96735 4.01813 4.16675 4.17065 4.24986 4.33470 4.36152 4.41244 4.41898 4.43645 4.49956 4.53850 4.67894 4.70006 4.75612 4.84460 4.85784 4.90372 4.96739 5.03069 5.24499 5.25979 5.36267 5.49706 5.67680 5.76164 5.89316 6.01812 6.11880 6.23553 6.30559 6.39507 6.65414 6.71732 7.30425 8.18274 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003664 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.978734 B = 7639.405581 C = 8660.609053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.409 6.409 4 C 0.079 3.921 5 C 0.086 3.914 6 H 0.039 0.961 7 C 0.090 3.910 8 N -0.619 5.619 9 C 0.576 3.424 10 O -0.581 6.581 11 C -0.249 4.249 12 C -0.048 4.048 13 C -0.217 4.217 14 C -0.063 4.063 15 C -0.243 4.243 16 C 0.103 3.897 17 C -0.461 4.461 18 H 0.036 0.964 19 C 0.041 3.959 20 N -0.855 5.855 21 Si 0.969 3.031 22 H -0.242 1.242 23 H -0.281 1.281 24 H -0.254 1.254 25 C 0.068 3.932 26 C 0.048 3.952 27 O -0.374 6.374 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.293 0.707 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.142 0.858 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 -6.777 -15.598 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.329 6.329 4 C 0.002 3.998 5 C 0.027 3.973 6 H 0.057 0.943 7 C -0.033 4.033 8 N -0.354 5.354 9 C 0.368 3.632 10 O -0.461 6.461 11 C -0.253 4.253 12 C -0.067 4.067 13 C -0.236 4.236 14 C -0.082 4.082 15 C -0.263 4.263 16 C 0.100 3.900 17 C -0.491 4.491 18 H 0.054 0.946 19 C -0.173 4.173 20 N -0.482 5.482 21 Si 0.791 3.209 22 H -0.166 1.166 23 H -0.207 1.207 24 H -0.178 1.178 25 C -0.054 4.054 26 C -0.030 4.030 27 O -0.292 6.292 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.160 0.840 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.217 -7.078 -14.965 17.083 hybrid contribution 0.422 0.095 1.320 1.389 sum -3.795 -6.983 -13.645 15.791 Atomic orbital electron populations 1.21766 0.93037 1.03432 1.02456 1.22710 0.96355 0.82554 1.01157 1.87914 1.20873 1.28457 1.95647 1.22384 0.82005 0.92846 1.02579 1.22334 0.92800 0.94606 0.87578 0.94289 1.22091 0.94546 0.82836 1.03828 1.48151 1.49591 1.11794 1.25833 1.18671 0.77118 0.87542 0.79864 1.90677 1.53204 1.68602 1.33597 1.19713 1.16566 0.91001 0.98057 1.21158 0.95076 0.96388 0.94034 1.20965 1.09949 0.92544 1.00126 1.21256 0.94507 1.00292 0.92099 1.21264 1.11740 0.94076 0.99175 1.17662 0.88551 0.91891 0.91939 1.19241 1.22537 1.16423 0.90901 0.94597 1.26946 0.99676 0.96573 0.94088 1.69602 1.38732 1.39347 1.00485 0.85463 0.78229 0.79021 0.78137 1.16587 1.20750 1.17763 1.22750 0.94957 1.00027 0.87668 1.23073 0.94317 0.81656 1.03909 1.87946 1.82007 1.22552 1.36737 0.88731 0.92894 0.92328 0.91874 0.92528 0.90207 0.90418 0.88204 0.90326 0.84633 0.83413 0.84273 0.87787 0.89618 0.87605 0.87936 0.83997 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.28 71.98 0.74 -1.68 16 2 C 0.05 0.89 6.66 71.98 0.48 1.37 16 3 O -0.41 -10.90 10.31 -144.74 -1.49 -12.39 16 4 C 0.08 1.90 5.61 71.98 0.40 2.30 16 5 C 0.09 2.59 3.06 30.69 0.09 2.68 16 6 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 7 C 0.09 2.87 5.92 86.36 0.51 3.38 16 8 N -0.62 -22.62 3.03 -822.04 -2.49 -25.11 16 9 C 0.58 27.17 6.50 86.66 0.56 27.73 16 10 O -0.58 -32.76 15.67 -4.07 -0.06 -32.83 16 11 C -0.25 -11.43 4.98 -19.70 -0.10 -11.53 16 12 C -0.05 -1.70 7.42 22.51 0.17 -1.53 16 13 C -0.22 -6.91 10.03 22.41 0.22 -6.69 16 14 C -0.06 -2.25 10.01 22.26 0.22 -2.03 16 15 C -0.24 -10.91 7.06 22.72 0.16 -10.75 16 16 C 0.10 5.32 5.04 -21.11 -0.11 5.22 16 17 C -0.46 -27.60 8.30 23.42 0.19 -27.41 16 18 H 0.04 2.43 7.65 -2.91 -0.02 2.41 16 19 C 0.04 2.32 5.47 85.37 0.47 2.78 16 20 N -0.85 -50.16 13.92 21.88 0.30 -49.85 16 21 Si 0.97 44.45 24.51 68.60 1.68 46.13 16 22 H -0.24 -9.88 6.67 99.48 0.66 -9.21 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.25 -11.89 6.83 99.48 0.68 -11.21 16 25 C 0.07 1.86 5.54 86.22 0.48 2.34 16 26 C 0.05 1.24 6.97 71.94 0.50 1.75 16 27 O -0.37 -10.86 10.36 -144.74 -1.50 -12.36 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.08 2.87 7.11 -2.39 -0.02 2.85 16 37 H 0.14 3.83 7.22 -2.91 -0.02 3.81 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.10 4.66 4.95 -2.91 -0.01 4.64 16 41 H 0.29 15.42 8.29 -92.71 -0.77 14.65 16 42 H 0.11 3.02 4.88 -2.39 -0.01 3.01 16 43 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.14 2.62 8.14 -2.38 -0.02 2.60 16 45 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -76.50 361.17 2.36 -74.14 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.92 Total: 24.33 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 5.00 Total: -12.06 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -2.18 Total: -74.96 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -3.06 Total: -57.58 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.68 Total: 46.13 kcal Total: -76.50 2.36 -74.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601685861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.110 kcal (2) G-P(sol) polarization free energy of solvation -76.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds