Wall clock time and date at job start Sat Apr 11 2020 00:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46873 * 2 1 4 4 C 1.34229 * 116.99815 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00107 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00042 * 179.97438 * 4 3 2 7 7 C 1.50698 * 109.47250 * 180.02562 * 6 4 3 8 8 C 1.38291 * 119.97133 * 270.02094 * 7 6 4 9 9 C 1.38243 * 120.11183 * 180.02562 * 8 7 6 10 10 C 1.38169 * 120.05537 * 359.67769 * 9 8 7 11 11 C 1.38714 * 119.93969 * 0.58098 * 10 9 8 12 12 O 1.35899 * 120.05206 * 179.72221 * 11 10 9 13 13 C 1.42898 * 117.00204 * 5.20475 * 12 11 10 14 14 H 1.09000 * 110.63960 * 33.11849 * 13 12 11 15 15 C 1.55153 * 110.72242 * 156.26336 * 13 12 11 16 16 C 1.54911 * 101.58587 * 153.86667 * 15 13 12 17 17 N 1.47427 * 104.92552 * 322.93346 * 16 15 13 18 18 C 1.36932 * 125.65128 * 204.15479 * 17 16 15 19 19 H 1.08003 * 120.00626 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99828 * 0.02770 * 18 17 16 21 21 N 1.31611 * 120.00007 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47498 * 89.99953 * 22 20 18 24 24 H 1.48503 * 109.46797 * 210.00061 * 22 20 18 25 25 H 1.48501 * 109.47248 * 329.99391 * 22 20 18 26 26 C 1.47295 * 108.55875 * 24.15816 * 17 16 15 27 27 C 1.38117 * 119.97324 * 90.00113 * 7 6 4 28 28 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47064 * 299.99744 * 1 2 3 30 30 H 1.08995 * 109.47930 * 59.99783 * 1 2 3 31 31 H 1.09005 * 109.46718 * 240.00668 * 2 1 3 32 32 H 1.08998 * 109.47215 * 120.00267 * 2 1 3 33 33 H 1.09008 * 109.47029 * 59.99814 * 6 4 3 34 34 H 1.08999 * 109.47489 * 300.00113 * 6 4 3 35 35 H 1.08000 * 119.94433 * 0.02562 * 8 7 6 36 36 H 1.08004 * 119.97121 * 179.97438 * 9 8 7 37 37 H 1.07992 * 120.02770 * 180.29724 * 10 9 8 38 38 H 1.09005 * 111.00231 * 35.79027 * 15 13 12 39 39 H 1.09004 * 111.00459 * 271.94024 * 15 13 12 40 40 H 1.08999 * 110.36854 * 81.82554 * 16 15 13 41 41 H 1.09004 * 110.36671 * 204.04537 * 16 15 13 42 42 H 0.97002 * 120.00236 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.85369 * 239.49861 * 26 17 16 44 44 H 1.08994 * 109.87525 * 118.35901 * 26 17 16 45 45 H 1.08001 * 120.03014 * 0.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 6 5.4256 2.8586 -0.0023 8 6 6.1164 2.8222 1.1951 9 6 7.4969 2.7504 1.1975 10 6 8.1897 2.7081 0.0027 11 6 7.4993 2.7500 -1.1997 12 8 8.1788 2.7143 -2.3761 13 6 9.5924 2.5184 -2.3032 14 1 9.8487 1.8797 -1.4580 15 6 10.1325 1.9186 -3.6283 16 6 11.6001 2.4144 -3.6187 17 7 11.5392 3.7701 -3.0427 18 6 12.4565 4.7660 -3.2469 19 1 12.3216 5.7292 -2.7773 20 6 13.5600 4.5376 -4.0575 21 7 13.7248 3.3638 -4.6293 22 14 14.8119 5.8960 -4.3354 23 1 15.8697 5.8147 -3.2963 24 1 15.4244 5.7373 -5.6789 25 1 14.1367 7.2160 -4.2522 26 6 10.3272 3.8724 -2.2119 27 6 6.1137 2.8224 -1.1993 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5850 3.4699 0.8888 34 1 3.5844 3.4694 -0.8911 35 1 5.5764 2.8498 2.1301 36 1 8.0342 2.7225 2.1340 37 1 9.2679 2.6472 0.0051 38 1 9.5912 2.3167 -4.4866 39 1 10.0880 0.8296 -3.6110 40 1 12.2159 1.7651 -2.9964 41 1 11.9948 2.4511 -4.6342 42 1 14.4961 3.2040 -5.1955 43 1 9.6857 4.6686 -2.5895 44 1 10.6033 4.0754 -1.1772 45 1 5.5738 2.8509 -2.1342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229721301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:05 Heat of formation + Delta-G solvation = -72.268527 kcal Electronic energy + Delta-G solvation = -25965.818011 eV Core-core repulsion = 22142.619920 eV Total energy + Delta-G solvation = -3823.198092 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83638 -40.00701 -38.10730 -36.83862 -36.06512 -33.02026 -32.35889 -31.95609 -30.22106 -29.13216 -28.12599 -27.22986 -24.59779 -23.83480 -22.56534 -22.22417 -21.12619 -20.25266 -19.69840 -17.98726 -17.81581 -17.07301 -16.96286 -16.43456 -15.95925 -15.74768 -15.11446 -14.72928 -14.62813 -14.25869 -13.85261 -13.78179 -13.56885 -13.35142 -13.09759 -12.94836 -12.54988 -12.43190 -12.07312 -12.04881 -11.90151 -11.80225 -11.60489 -11.56860 -11.02944 -10.94249 -10.86198 -10.76958 -10.70578 -10.40986 -10.22242 -10.05589 -9.82231 -9.61487 -8.86838 -8.69501 -8.01561 -6.89833 -5.69309 -3.11657 1.22043 1.53242 1.98971 2.45066 3.38772 3.42513 3.45041 3.48571 3.81214 4.35918 4.46466 4.53946 4.55479 4.65757 4.73614 4.88858 4.93049 5.10265 5.15606 5.23601 5.26702 5.32658 5.34579 5.37182 5.44247 5.54092 5.56358 5.61588 5.63784 5.76632 6.00304 6.16886 6.25061 6.34861 6.39910 6.46968 6.48725 6.52201 6.60271 6.62540 6.89350 7.42458 7.52572 7.57698 7.72201 7.81409 8.30037 9.16984 9.77141 10.40973 11.34971 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.032836 B = 0.002163 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.508268 B =12942.047124 C =13304.240622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.460 3.540 5 O -0.494 6.494 6 C -0.069 4.069 7 C -0.048 4.048 8 C -0.149 4.149 9 C -0.078 4.078 10 C -0.202 4.202 11 C 0.144 3.856 12 O -0.304 6.304 13 C 0.069 3.931 14 H 0.078 0.922 15 C -0.136 4.136 16 C 0.152 3.848 17 N -0.601 5.601 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.917 3.083 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.119 3.881 27 C -0.141 4.141 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.016 0.984 41 H 0.114 0.886 42 H 0.253 0.747 43 H 0.036 0.964 44 H 0.026 0.974 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.145 -4.701 11.051 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.303 3.697 5 O -0.380 6.380 6 C -0.106 4.106 7 C -0.048 4.048 8 C -0.167 4.167 9 C -0.096 4.096 10 C -0.220 4.220 11 C 0.097 3.903 12 O -0.217 6.217 13 C 0.013 3.987 14 H 0.096 0.904 15 C -0.175 4.175 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.096 0.904 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.748 3.252 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.007 4.007 27 C -0.160 4.160 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.132 0.868 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.810 -4.966 10.724 26.581 hybrid contribution 0.882 0.425 0.140 0.989 sum -22.928 -4.541 10.863 25.775 Atomic orbital electron populations 1.21809 0.92591 1.03012 1.03527 1.23028 0.95327 0.80195 1.02726 1.86494 1.24654 1.32480 1.84343 1.23665 0.80440 0.92771 0.72873 1.90724 1.60260 1.42964 1.44027 1.20285 0.92209 0.91350 1.06801 1.18881 0.92538 1.00266 0.93129 1.20768 0.94334 1.04760 0.96885 1.20872 0.93877 0.97331 0.97491 1.21458 1.00982 1.07369 0.92232 1.19004 0.91559 0.94214 0.85483 1.86157 1.21976 1.86207 1.27319 1.23692 0.76482 0.98052 1.00510 0.90444 1.23210 0.99966 0.99261 0.95044 1.22000 0.88462 0.84293 1.02523 1.44437 1.22937 1.11051 1.54436 1.19083 0.99886 0.91881 1.24233 0.90350 1.24806 0.98619 0.97312 0.99918 1.69755 1.30039 1.21151 1.36211 0.86029 0.81142 0.80778 0.77287 1.21581 1.21570 1.20640 1.21736 0.89773 0.94246 0.94957 1.20171 0.91292 1.06451 0.98060 0.90227 0.91490 0.91414 0.91147 0.91234 0.86580 0.86555 0.86315 0.85775 0.84890 0.90786 0.91513 0.96569 0.86832 0.93593 0.94619 0.95590 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.36 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.37 10.22 -39.25 -0.40 -3.77 16 4 C 0.46 4.94 7.95 36.00 0.29 5.22 16 5 O -0.49 -7.08 15.78 -18.75 -0.30 -7.38 16 6 C -0.07 -0.58 5.94 -29.04 -0.17 -0.76 16 7 C -0.05 -0.57 4.37 -104.65 -0.46 -1.02 16 8 C -0.15 -1.73 9.70 -39.56 -0.38 -2.11 16 9 C -0.08 -0.98 10.04 -39.60 -0.40 -1.37 16 10 C -0.20 -3.00 8.91 -39.43 -0.35 -3.35 16 11 C 0.14 2.31 6.67 -39.22 -0.26 2.05 16 12 O -0.30 -5.54 9.86 -19.42 -0.19 -5.73 16 13 C 0.07 1.31 2.74 -24.90 -0.07 1.24 16 14 H 0.08 1.37 6.25 -51.93 -0.32 1.04 16 15 C -0.14 -2.71 6.81 -24.58 -0.17 -2.88 16 16 C 0.15 3.72 5.88 -2.53 -0.01 3.70 16 17 N -0.60 -15.69 3.40 -169.85 -0.58 -16.27 16 18 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 22 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 C 0.12 2.60 6.82 -2.91 -0.02 2.58 16 27 C -0.14 -1.98 9.64 -39.44 -0.38 -2.36 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.12 0.67 8.09 -51.92 -0.42 0.25 16 34 H 0.12 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.13 1.99 5.63 -52.49 -0.30 1.70 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.11 3.09 5.87 -51.93 -0.30 2.79 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 44 H 0.03 0.55 7.82 -51.93 -0.41 0.15 16 45 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -32.98 373.18 -9.12 -42.10 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.78 Total: 0.20 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.03 Total: -5.56 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.02 Total: -42.55 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.89 Total: -16.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.98 -9.12 -42.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229721301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.172 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds