Wall clock time and date at job start Sat Apr 11 2020 00:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46873 * 2 1 4 4 C 1.34229 * 116.99815 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00107 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00042 * 179.97438 * 4 3 2 7 7 C 1.50698 * 109.47250 * 180.02562 * 6 4 3 8 8 C 1.38291 * 119.97133 * 270.02094 * 7 6 4 9 9 C 1.38243 * 120.11183 * 180.02562 * 8 7 6 10 10 C 1.38169 * 120.05537 * 359.67769 * 9 8 7 11 11 C 1.38714 * 119.93969 * 0.58098 * 10 9 8 12 12 O 1.35899 * 120.05206 * 179.72221 * 11 10 9 13 13 C 1.42898 * 117.00204 * 5.20475 * 12 11 10 14 14 H 1.09000 * 110.63960 * 33.11849 * 13 12 11 15 15 C 1.55153 * 110.72242 * 156.26336 * 13 12 11 16 16 C 1.54911 * 101.58587 * 153.86667 * 15 13 12 17 17 N 1.47427 * 104.92552 * 322.93346 * 16 15 13 18 18 C 1.36932 * 125.65128 * 204.15479 * 17 16 15 19 19 H 1.08003 * 120.00626 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99828 * 0.02770 * 18 17 16 21 21 N 1.31611 * 120.00007 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47498 * 89.99953 * 22 20 18 24 24 H 1.48503 * 109.46797 * 210.00061 * 22 20 18 25 25 H 1.48501 * 109.47248 * 329.99391 * 22 20 18 26 26 C 1.47295 * 108.55875 * 24.15816 * 17 16 15 27 27 C 1.38117 * 119.97324 * 90.00113 * 7 6 4 28 28 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47064 * 299.99744 * 1 2 3 30 30 H 1.08995 * 109.47930 * 59.99783 * 1 2 3 31 31 H 1.09005 * 109.46718 * 240.00668 * 2 1 3 32 32 H 1.08998 * 109.47215 * 120.00267 * 2 1 3 33 33 H 1.09008 * 109.47029 * 59.99814 * 6 4 3 34 34 H 1.08999 * 109.47489 * 300.00113 * 6 4 3 35 35 H 1.08000 * 119.94433 * 0.02562 * 8 7 6 36 36 H 1.08004 * 119.97121 * 179.97438 * 9 8 7 37 37 H 1.07992 * 120.02770 * 180.29724 * 10 9 8 38 38 H 1.09005 * 111.00231 * 35.79027 * 15 13 12 39 39 H 1.09004 * 111.00459 * 271.94024 * 15 13 12 40 40 H 1.08999 * 110.36854 * 81.82554 * 16 15 13 41 41 H 1.09004 * 110.36671 * 204.04537 * 16 15 13 42 42 H 0.97002 * 120.00236 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.85369 * 239.49861 * 26 17 16 44 44 H 1.08994 * 109.87525 * 118.35901 * 26 17 16 45 45 H 1.08001 * 120.03014 * 0.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 6 5.4256 2.8586 -0.0023 8 6 6.1164 2.8222 1.1951 9 6 7.4969 2.7504 1.1975 10 6 8.1897 2.7081 0.0027 11 6 7.4993 2.7500 -1.1997 12 8 8.1788 2.7143 -2.3761 13 6 9.5924 2.5184 -2.3032 14 1 9.8487 1.8797 -1.4580 15 6 10.1325 1.9186 -3.6283 16 6 11.6001 2.4144 -3.6187 17 7 11.5392 3.7701 -3.0427 18 6 12.4565 4.7660 -3.2469 19 1 12.3216 5.7292 -2.7773 20 6 13.5600 4.5376 -4.0575 21 7 13.7248 3.3638 -4.6293 22 14 14.8119 5.8960 -4.3354 23 1 15.8697 5.8147 -3.2963 24 1 15.4244 5.7373 -5.6789 25 1 14.1367 7.2160 -4.2522 26 6 10.3272 3.8724 -2.2119 27 6 6.1137 2.8224 -1.1993 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5850 3.4699 0.8888 34 1 3.5844 3.4694 -0.8911 35 1 5.5764 2.8498 2.1301 36 1 8.0342 2.7225 2.1340 37 1 9.2679 2.6472 0.0051 38 1 9.5912 2.3167 -4.4866 39 1 10.0880 0.8296 -3.6110 40 1 12.2159 1.7651 -2.9964 41 1 11.9948 2.4511 -4.6342 42 1 14.4961 3.2040 -5.1955 43 1 9.6857 4.6686 -2.5895 44 1 10.6033 4.0754 -1.1772 45 1 5.5738 2.8509 -2.1342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229721301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:05 Heat of formation + Delta-G solvation = -90.235567 kcal Electronic energy + Delta-G solvation = -25966.597121 eV Core-core repulsion = 22142.619920 eV Total energy + Delta-G solvation = -3823.977201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70796 -41.17287 -39.37885 -37.92250 -37.43701 -34.35822 -33.85953 -32.52639 -31.60917 -30.78414 -29.24182 -28.72056 -26.55530 -24.52192 -23.57773 -23.29394 -22.19569 -22.10491 -21.00168 -19.09639 -18.96306 -18.75778 -17.75664 -17.32734 -17.09597 -16.83541 -16.71730 -16.51761 -15.64417 -15.49782 -15.18521 -15.00284 -14.46938 -14.37258 -14.31707 -14.19754 -13.69735 -13.57405 -13.32232 -13.17450 -13.08734 -12.90083 -12.78198 -12.71115 -12.58316 -12.48346 -12.26803 -12.04309 -11.98710 -11.77557 -11.65772 -11.51463 -11.49976 -11.40388 -10.79753 -9.86545 -9.15747 -8.97264 -7.82192 -5.28132 0.23394 0.49220 1.19670 1.46080 1.48318 1.57214 1.73576 2.14257 2.48082 2.81512 3.28628 3.53804 3.57520 3.64612 3.88332 3.90994 3.91740 3.96602 4.01270 4.10379 4.11685 4.23714 4.34289 4.36912 4.45687 4.53621 4.60476 4.62790 4.74451 4.82984 4.85680 4.91734 4.94282 4.96916 5.06900 5.17409 5.35282 5.40942 5.47363 5.48313 5.52194 5.53757 5.71342 5.84220 6.23357 6.47135 6.74795 7.04382 7.69100 8.32954 9.20155 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.032836 B = 0.002163 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.508268 B =12942.047124 C =13304.240622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.537 6.537 6 C -0.066 4.066 7 C -0.046 4.046 8 C -0.144 4.144 9 C -0.082 4.082 10 C -0.217 4.217 11 C 0.109 3.891 12 O -0.317 6.317 13 C 0.087 3.913 14 H 0.091 0.909 15 C -0.124 4.124 16 C 0.155 3.845 17 N -0.623 5.623 18 C -0.244 4.244 19 H 0.081 0.919 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.985 3.015 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.270 1.270 26 C 0.120 3.880 27 C -0.152 4.152 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.000 1.000 41 H 0.083 0.917 42 H 0.250 0.750 43 H 0.026 0.974 44 H 0.033 0.967 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.412 -4.094 12.762 29.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.427 6.427 6 C -0.102 4.102 7 C -0.047 4.047 8 C -0.162 4.162 9 C -0.099 4.099 10 C -0.236 4.236 11 C 0.064 3.936 12 O -0.230 6.230 13 C 0.030 3.970 14 H 0.109 0.891 15 C -0.163 4.163 16 C 0.030 3.970 17 N -0.351 5.351 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.258 4.258 21 N -0.597 5.597 22 Si 0.813 3.187 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.195 1.195 26 C -0.006 4.006 27 C -0.171 4.171 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.170 0.830 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.143 0.857 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.018 0.982 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -26.131 -4.347 12.456 29.272 hybrid contribution 1.440 0.220 -0.298 1.487 sum -24.690 -4.127 12.158 27.829 Atomic orbital electron populations 1.21820 0.90344 1.04268 1.03861 1.23253 0.97091 0.79419 1.02315 1.86500 1.23905 1.33428 1.83813 1.24065 0.80548 0.93075 0.71497 1.90717 1.61181 1.44480 1.46294 1.20423 0.89663 0.90479 1.09665 1.19251 0.94494 0.98557 0.92360 1.21230 0.94136 1.02651 0.98196 1.21214 0.94686 0.96472 0.97567 1.21516 1.00776 1.08415 0.92877 1.19324 0.92409 0.96747 0.85102 1.86103 1.20975 1.87068 1.28872 1.23347 0.77239 0.96222 1.00182 0.89077 1.23025 0.96717 1.00882 0.95631 1.21773 0.91110 0.83861 1.00222 1.44725 1.23787 1.11201 1.55353 1.19442 1.00713 0.92646 1.24438 0.90152 1.25686 1.00550 0.99685 0.99836 1.69996 1.30318 1.22814 1.36589 0.84982 0.78523 0.78374 0.76832 1.21126 1.21669 1.19504 1.21810 0.88495 0.95881 0.94376 1.20426 0.90629 1.06576 0.99436 0.88545 0.90927 0.91242 0.91921 0.91420 0.83004 0.84320 0.83072 0.83381 0.85719 0.91183 0.88726 0.98182 0.89874 0.94015 0.95593 0.94948 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 71.98 0.74 -0.38 16 2 C 0.05 0.73 6.19 71.98 0.45 1.18 16 3 O -0.36 -5.93 10.22 -51.41 -0.53 -6.46 16 4 C 0.46 8.95 7.95 71.24 0.57 9.52 16 5 O -0.54 -14.82 15.78 21.97 0.35 -14.47 16 6 C -0.07 -0.88 5.94 29.10 0.17 -0.71 16 7 C -0.05 -0.98 4.37 -19.88 -0.09 -1.07 16 8 C -0.14 -2.90 9.70 22.28 0.22 -2.69 16 9 C -0.08 -1.88 10.04 22.25 0.22 -1.66 16 10 C -0.22 -6.33 8.91 22.37 0.20 -6.13 16 11 C 0.11 3.49 6.67 22.51 0.15 3.64 16 12 O -0.32 -11.59 9.86 -92.42 -0.91 -12.50 16 13 C 0.09 3.31 2.74 31.78 0.09 3.40 16 14 H 0.09 3.22 6.25 -2.39 -0.01 3.20 16 15 C -0.12 -4.98 6.81 31.99 0.22 -4.76 16 16 C 0.16 7.84 5.88 86.86 0.51 8.35 16 17 N -0.62 -33.40 3.40 -691.28 -2.35 -35.76 16 18 C -0.24 -14.01 10.28 84.03 0.86 -13.15 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.06 -3.72 5.49 84.86 0.47 -3.26 16 21 N -0.95 -56.66 10.09 21.65 0.22 -56.44 16 22 Si 0.99 45.95 29.55 68.60 2.03 47.98 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C 0.12 5.34 6.82 86.68 0.59 5.93 16 27 C -0.15 -4.10 9.64 22.36 0.22 -3.89 16 28 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.96 8.13 -2.38 -0.02 0.94 16 32 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.15 1.01 8.09 -2.38 -0.02 0.99 16 34 H 0.14 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.12 3.73 5.63 -2.91 -0.02 3.72 16 38 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 39 H 0.09 3.25 8.14 -2.38 -0.02 3.23 16 40 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.08 4.73 5.87 -2.39 -0.01 4.72 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 44 H 0.03 1.40 7.82 -2.39 -0.02 1.38 16 45 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -73.35 373.18 5.36 -67.98 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.98 Total: 15.35 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.58 Total: -5.69 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -2.13 Total: -92.19 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.09 Total: -33.43 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.35 5.36 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229721301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.251 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds