Wall clock time and date at job start Sat Apr 11 2020 00:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 119.99940 * 2 1 4 4 C 1.50700 * 120.00408 * 179.97438 * 2 1 3 5 5 C 1.52993 * 109.47486 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47190 * 179.97438 * 5 4 2 7 7 C 1.38251 * 119.93385 * 270.02517 * 6 5 4 8 8 C 1.38235 * 120.15169 * 179.97438 * 7 6 5 9 9 C 1.38576 * 119.99765 * 359.72253 * 8 7 6 10 10 O 1.35994 * 120.07357 * 180.27531 * 9 8 7 11 11 C 1.39157 * 119.84969 * 0.55048 * 9 8 7 12 12 O 1.35988 * 120.06907 * 179.72032 * 11 9 8 13 13 C 1.42901 * 116.99881 * 174.30472 * 12 11 9 14 14 H 1.08996 * 110.63993 * 321.74379 * 13 12 11 15 15 C 1.55158 * 110.72092 * 198.41156 * 13 12 11 16 16 C 1.55123 * 101.48738 * 205.96933 * 15 13 12 17 17 N 1.47424 * 104.72226 * 37.29313 * 16 15 13 18 18 C 1.36937 * 125.64509 * 155.82229 * 17 16 15 19 19 H 1.08000 * 119.99518 * 209.88666 * 18 17 16 20 20 C 1.38812 * 120.00490 * 29.88584 * 18 17 16 21 21 N 1.31614 * 119.99992 * 200.91873 * 20 18 17 22 22 Si 1.86802 * 119.99935 * 20.91721 * 20 18 17 23 23 H 1.48502 * 109.47114 * 274.46786 * 22 20 18 24 24 H 1.48500 * 109.46926 * 34.46445 * 22 20 18 25 25 H 1.48494 * 109.47020 * 154.46611 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.55469 * 17 16 15 27 27 C 1.38248 * 119.92221 * 90.00419 * 6 5 4 28 28 H 1.08997 * 109.47783 * 270.00329 * 1 2 3 29 29 H 1.09001 * 109.47069 * 30.00839 * 1 2 3 30 30 H 1.09006 * 109.46919 * 150.00516 * 1 2 3 31 31 H 1.08999 * 109.46834 * 59.99902 * 4 2 1 32 32 H 1.09000 * 109.47282 * 300.00698 * 4 2 1 33 33 H 1.09000 * 109.46881 * 60.00438 * 5 4 2 34 34 H 1.08998 * 109.47694 * 300.00154 * 5 4 2 35 35 H 1.07997 * 119.92263 * 359.95409 * 7 6 5 36 36 H 1.08002 * 120.00200 * 180.02562 * 8 7 6 37 37 H 0.96701 * 113.99959 * 270.27640 * 10 9 8 38 38 H 1.09006 * 111.00403 * 324.20710 * 15 13 12 39 39 H 1.08998 * 111.01078 * 88.01782 * 15 13 12 40 40 H 1.09001 * 110.49521 * 278.45371 * 16 15 13 41 41 H 1.09003 * 110.34857 * 156.05904 * 16 15 13 42 42 H 0.97005 * 120.00060 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.88326 * 120.70369 * 26 17 16 44 44 H 1.09004 * 109.88393 * 241.71961 * 26 17 16 45 45 H 1.07996 * 120.00089 * 0.04489 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5182 -2.3306 0.0023 7 6 4.8622 -2.9275 1.2010 8 6 5.5529 -4.1249 1.2073 9 6 5.8971 -4.7325 0.0104 10 8 6.5717 -5.9133 0.0149 11 6 5.5559 -4.1288 -1.1961 12 8 5.8965 -4.7184 -2.3732 13 6 5.4066 -4.1092 -3.5695 14 1 4.3911 -3.7407 -3.4249 15 6 5.4694 -5.1047 -4.7579 16 6 5.5747 -4.1373 -5.9660 17 7 6.4306 -3.0353 -5.4900 18 6 7.1794 -2.2070 -6.2826 19 1 8.0961 -1.7802 -5.9033 20 6 6.7604 -1.9159 -7.5736 21 7 7.6270 -1.4842 -8.4651 22 14 4.9665 -2.1368 -8.0454 23 1 4.7314 -3.5458 -8.4514 24 1 4.1045 -1.8064 -6.8823 25 1 4.6377 -1.2340 -9.1776 26 6 6.3418 -2.9689 -4.0240 27 6 4.8637 -2.9285 -1.1953 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 1.9972 -1.8770 -0.8891 32 1 1.9972 -1.8763 0.8907 33 1 4.0276 -0.4538 0.8911 34 1 4.0285 -0.4541 -0.8888 35 1 4.5908 -2.4570 2.1345 36 1 5.8200 -4.5893 2.1451 37 1 7.5339 -5.8166 0.0186 38 1 6.3500 -5.7433 -4.6866 39 1 4.5597 -5.7024 -4.8156 40 1 4.5893 -3.7609 -6.2405 41 1 6.0398 -4.6395 -6.8143 42 1 7.3343 -1.2811 -9.3674 43 1 7.3308 -3.1038 -3.5863 44 1 5.9305 -2.0060 -3.7208 45 1 4.5942 -2.4600 -2.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230392244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:13 Heat of formation + Delta-G solvation = -72.130892 kcal Electronic energy + Delta-G solvation = -26733.435059 eV Core-core repulsion = 22910.242935 eV Total energy + Delta-G solvation = -3823.192123 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.60297 -39.71172 -38.50487 -37.01706 -36.44838 -33.52641 -32.43977 -30.96113 -30.36034 -29.64200 -28.65668 -27.93983 -24.67027 -24.34087 -22.79499 -21.49583 -20.83095 -20.22301 -19.80875 -18.63717 -17.47348 -17.00864 -16.44176 -16.10942 -15.79844 -15.69393 -15.48093 -15.22623 -14.84820 -14.37686 -14.27243 -13.91838 -13.63479 -13.50323 -13.19454 -12.80460 -12.62201 -12.53922 -12.48586 -12.36023 -12.16895 -12.04337 -11.63884 -11.54686 -11.41340 -11.22674 -11.01373 -10.76434 -10.53350 -10.37328 -10.27453 -10.14233 -9.92470 -9.61834 -8.81214 -8.66281 -8.06312 -7.00821 -6.03878 -3.42660 1.08710 1.32259 1.69043 3.22918 3.29494 3.42068 3.45297 3.47245 3.76954 4.20117 4.48064 4.57718 4.64769 4.71731 4.83094 4.84024 4.86303 4.95488 5.03758 5.11666 5.18111 5.20977 5.23600 5.26594 5.33452 5.37159 5.51919 5.62752 5.67075 5.76224 5.80037 5.90989 5.92096 6.12948 6.14877 6.18656 6.37342 6.43670 6.49824 6.53776 6.64619 6.67368 7.23362 7.37530 7.73747 7.75937 8.26052 8.76906 9.59968 10.11401 11.12138 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009540 B = 0.004067 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.269164 B = 6882.375906 C = 9028.334201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.353 3.647 3 O -0.457 6.457 4 C -0.167 4.167 5 C -0.074 4.074 6 C -0.051 4.051 7 C -0.146 4.146 8 C -0.106 4.106 9 C 0.064 3.936 10 O -0.488 6.488 11 C 0.120 3.880 12 O -0.293 6.293 13 C 0.067 3.933 14 H 0.078 0.922 15 C -0.121 4.121 16 C 0.118 3.882 17 N -0.603 5.603 18 C -0.249 4.249 19 H 0.087 0.913 20 C 0.033 3.967 21 N -0.902 5.902 22 Si 0.881 3.119 23 H -0.282 1.282 24 H -0.276 1.276 25 H -0.299 1.299 26 C 0.114 3.886 27 C -0.191 4.191 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.385 0.615 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.265 0.735 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.967 -4.556 20.897 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.228 3.772 3 O -0.331 6.331 4 C -0.205 4.205 5 C -0.111 4.111 6 C -0.051 4.051 7 C -0.164 4.164 8 C -0.124 4.124 9 C 0.019 3.981 10 O -0.297 6.297 11 C 0.073 3.927 12 O -0.206 6.206 13 C 0.011 3.989 14 H 0.096 0.904 15 C -0.159 4.159 16 C -0.007 4.007 17 N -0.331 5.331 18 C -0.376 4.376 19 H 0.105 0.895 20 C -0.167 4.167 21 N -0.544 5.544 22 Si 0.710 3.290 23 H -0.209 1.209 24 H -0.201 1.201 25 H -0.226 1.226 26 C -0.012 4.012 27 C -0.210 4.210 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.240 0.760 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.990 -4.294 20.620 24.236 hybrid contribution -0.718 0.226 -0.485 0.895 sum -12.708 -4.068 20.135 24.155 Atomic orbital electron populations 1.22303 0.94497 1.04930 1.04566 1.24670 0.91994 0.90308 0.70190 1.90438 1.71955 1.35199 1.35468 1.22162 0.95663 0.97502 1.05157 1.20419 0.92374 0.93858 1.04485 1.19626 0.97187 0.95875 0.92427 1.20751 1.02040 0.96097 0.97514 1.21171 0.99393 0.95024 0.96852 1.17776 1.02498 0.88269 0.89594 1.84876 1.22831 1.25768 1.96210 1.19498 0.95333 0.91542 0.86316 1.86212 1.70663 1.51852 1.11844 1.23636 0.97384 0.95480 0.82417 0.90421 1.22883 1.02709 0.97279 0.93044 1.21990 0.94674 0.88581 0.95493 1.44597 1.54210 1.33756 1.00538 1.18570 1.01363 1.23241 0.94429 0.89505 1.25291 0.97476 0.97775 0.96208 1.69824 1.33359 1.47707 1.03536 0.86881 0.87535 0.77256 0.77280 1.20908 1.20123 1.22626 1.21901 0.97259 0.94858 0.87180 1.21247 1.04043 0.96278 0.99409 0.88723 0.89696 0.89599 0.88072 0.88104 0.90186 0.90023 0.85723 0.84983 0.76001 0.89707 0.90829 0.95739 0.91651 0.92485 0.93850 0.94699 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.16 10.25 36.00 0.37 -0.80 16 2 C 0.35 3.11 7.27 -29.04 -0.21 2.90 16 3 O -0.46 -5.93 16.72 6.00 0.10 -5.83 16 4 C -0.17 -1.29 5.61 -27.89 -0.16 -1.45 16 5 C -0.07 -0.74 4.63 -27.89 -0.13 -0.87 16 6 C -0.05 -0.57 5.13 -104.61 -0.54 -1.11 16 7 C -0.15 -1.46 9.69 -39.58 -0.38 -1.84 16 8 C -0.11 -1.13 9.98 -39.46 -0.39 -1.52 16 9 C 0.06 0.84 6.72 -39.12 -0.26 0.57 16 10 O -0.49 -6.12 13.29 -34.22 -0.45 -6.57 16 11 C 0.12 1.76 6.64 -39.12 -0.26 1.50 16 12 O -0.29 -4.84 9.66 -34.21 -0.33 -5.17 16 13 C 0.07 1.14 2.77 -24.90 -0.07 1.07 16 14 H 0.08 1.21 6.60 -51.93 -0.34 0.86 16 15 C -0.12 -2.06 6.82 -24.47 -0.17 -2.23 16 16 C 0.12 2.51 4.87 -2.41 -0.01 2.49 16 17 N -0.60 -14.66 3.03 -169.94 -0.52 -15.17 16 18 C -0.25 -7.09 10.51 -15.06 -0.16 -7.25 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.03 0.95 5.43 -17.43 -0.09 0.85 16 21 N -0.90 -27.62 13.97 55.49 0.78 -26.85 16 22 Si 0.88 22.23 24.55 -169.99 -4.17 18.05 16 23 H -0.28 -6.81 6.98 56.52 0.39 -6.42 16 24 H -0.28 -6.84 6.98 56.52 0.39 -6.45 16 25 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 26 C 0.11 2.31 6.50 -3.07 -0.02 2.29 16 27 C -0.19 -2.55 8.42 -39.46 -0.33 -2.89 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.35 8.12 -51.93 -0.42 -0.08 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 34 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.38 3.25 9.06 45.56 0.41 3.66 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.54 5.50 -51.93 -0.29 0.25 16 41 H 0.07 1.45 7.85 -51.93 -0.41 1.04 16 42 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.04 0.91 8.06 -51.93 -0.42 0.50 16 44 H 0.04 0.71 7.42 -51.93 -0.39 0.32 16 45 H 0.14 1.88 5.31 -52.49 -0.28 1.60 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -34.55 368.86 -7.77 -42.33 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.92 Total: 1.93 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.82 Total: -8.27 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.26 Total: -42.02 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.69 Total: -17.58 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.17 Total: 18.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.55 -7.77 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230392244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.803 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds