Wall clock time and date at job start Sat Apr 11 2020 00:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20764 * 119.99940 * 2 1 4 4 C 1.50700 * 120.00408 * 179.97438 * 2 1 3 5 5 C 1.52993 * 109.47486 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47190 * 179.97438 * 5 4 2 7 7 C 1.38251 * 119.93385 * 270.02517 * 6 5 4 8 8 C 1.38235 * 120.15169 * 179.97438 * 7 6 5 9 9 C 1.38576 * 119.99765 * 359.72253 * 8 7 6 10 10 O 1.35994 * 120.07357 * 180.27531 * 9 8 7 11 11 C 1.39157 * 119.84969 * 0.55048 * 9 8 7 12 12 O 1.35988 * 120.06907 * 179.72032 * 11 9 8 13 13 C 1.42901 * 116.99881 * 174.30472 * 12 11 9 14 14 H 1.08996 * 110.63993 * 321.74379 * 13 12 11 15 15 C 1.55158 * 110.72092 * 198.41156 * 13 12 11 16 16 C 1.55123 * 101.48738 * 205.96933 * 15 13 12 17 17 N 1.47424 * 104.72226 * 37.29313 * 16 15 13 18 18 C 1.36937 * 125.64509 * 155.82229 * 17 16 15 19 19 H 1.08000 * 119.99518 * 209.88666 * 18 17 16 20 20 C 1.38812 * 120.00490 * 29.88584 * 18 17 16 21 21 N 1.31614 * 119.99992 * 200.91873 * 20 18 17 22 22 Si 1.86802 * 119.99935 * 20.91721 * 20 18 17 23 23 H 1.48502 * 109.47114 * 274.46786 * 22 20 18 24 24 H 1.48500 * 109.46926 * 34.46445 * 22 20 18 25 25 H 1.48494 * 109.47020 * 154.46611 * 22 20 18 26 26 C 1.47016 * 108.70440 * 335.55469 * 17 16 15 27 27 C 1.38248 * 119.92221 * 90.00419 * 6 5 4 28 28 H 1.08997 * 109.47783 * 270.00329 * 1 2 3 29 29 H 1.09001 * 109.47069 * 30.00839 * 1 2 3 30 30 H 1.09006 * 109.46919 * 150.00516 * 1 2 3 31 31 H 1.08999 * 109.46834 * 59.99902 * 4 2 1 32 32 H 1.09000 * 109.47282 * 300.00698 * 4 2 1 33 33 H 1.09000 * 109.46881 * 60.00438 * 5 4 2 34 34 H 1.08998 * 109.47694 * 300.00154 * 5 4 2 35 35 H 1.07997 * 119.92263 * 359.95409 * 7 6 5 36 36 H 1.08002 * 120.00200 * 180.02562 * 8 7 6 37 37 H 0.96701 * 113.99959 * 270.27640 * 10 9 8 38 38 H 1.09006 * 111.00403 * 324.20710 * 15 13 12 39 39 H 1.08998 * 111.01078 * 88.01782 * 15 13 12 40 40 H 1.09001 * 110.49521 * 278.45371 * 16 15 13 41 41 H 1.09003 * 110.34857 * 156.05904 * 16 15 13 42 42 H 0.97005 * 120.00060 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.88326 * 120.70369 * 26 17 16 44 44 H 1.09004 * 109.88393 * 241.71961 * 26 17 16 45 45 H 1.07996 * 120.00089 * 0.04489 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0459 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5182 -2.3306 0.0023 7 6 4.8622 -2.9275 1.2010 8 6 5.5529 -4.1249 1.2073 9 6 5.8971 -4.7325 0.0104 10 8 6.5717 -5.9133 0.0149 11 6 5.5559 -4.1288 -1.1961 12 8 5.8965 -4.7184 -2.3732 13 6 5.4066 -4.1092 -3.5695 14 1 4.3911 -3.7407 -3.4249 15 6 5.4694 -5.1047 -4.7579 16 6 5.5747 -4.1373 -5.9660 17 7 6.4306 -3.0353 -5.4900 18 6 7.1794 -2.2070 -6.2826 19 1 8.0961 -1.7802 -5.9033 20 6 6.7604 -1.9159 -7.5736 21 7 7.6270 -1.4842 -8.4651 22 14 4.9665 -2.1368 -8.0454 23 1 4.7314 -3.5458 -8.4514 24 1 4.1045 -1.8064 -6.8823 25 1 4.6377 -1.2340 -9.1776 26 6 6.3418 -2.9689 -4.0240 27 6 4.8637 -2.9285 -1.1953 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8899 -0.5140 30 1 -0.3633 -0.8901 -0.5138 31 1 1.9972 -1.8770 -0.8891 32 1 1.9972 -1.8763 0.8907 33 1 4.0276 -0.4538 0.8911 34 1 4.0285 -0.4541 -0.8888 35 1 4.5908 -2.4570 2.1345 36 1 5.8200 -4.5893 2.1451 37 1 7.5339 -5.8166 0.0186 38 1 6.3500 -5.7433 -4.6866 39 1 4.5597 -5.7024 -4.8156 40 1 4.5893 -3.7609 -6.2405 41 1 6.0398 -4.6395 -6.8143 42 1 7.3343 -1.2811 -9.3674 43 1 7.3308 -3.1038 -3.5863 44 1 5.9305 -2.0060 -3.7208 45 1 4.5942 -2.4600 -2.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230392244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:12 Heat of formation + Delta-G solvation = -95.579968 kcal Electronic energy + Delta-G solvation = -26734.451887 eV Core-core repulsion = 22910.242935 eV Total energy + Delta-G solvation = -3824.208952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.64336 -40.50451 -39.75079 -37.93556 -37.90176 -34.57881 -34.25027 -31.84243 -31.62527 -30.86458 -29.89927 -29.08619 -26.39509 -25.26278 -23.90572 -22.86171 -22.08640 -21.67074 -20.47630 -19.64106 -19.11637 -18.41249 -17.42547 -17.33876 -16.94347 -16.74420 -16.47887 -16.24865 -15.92896 -15.78738 -15.43722 -15.08646 -15.04638 -14.49564 -14.38596 -14.17186 -13.94748 -13.85934 -13.52239 -13.18550 -13.17696 -13.09076 -12.92069 -12.84892 -12.59302 -12.54441 -12.27522 -12.20150 -11.96514 -11.78611 -11.66458 -11.60711 -11.44140 -10.80870 -10.63481 -9.72443 -9.07453 -9.00627 -8.27428 -5.64472 0.19168 0.39111 1.03489 1.28240 1.36242 1.46630 2.05333 2.36305 2.58557 2.96085 3.12260 3.25813 3.33846 3.52884 3.68800 3.81337 3.86436 3.91068 4.01058 4.08711 4.25306 4.30065 4.33717 4.36472 4.39642 4.62773 4.64206 4.66628 4.72758 4.79574 4.83700 4.85319 4.88198 4.91635 4.96202 5.10496 5.16173 5.20845 5.24753 5.32816 5.59847 5.67836 5.78491 6.03605 6.29665 6.59688 6.67598 6.88793 7.41977 8.01574 8.92766 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009540 B = 0.004067 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.269164 B = 6882.375906 C = 9028.334201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.354 3.646 3 O -0.509 6.509 4 C -0.164 4.164 5 C -0.073 4.073 6 C -0.051 4.051 7 C -0.133 4.133 8 C -0.100 4.100 9 C 0.055 3.945 10 O -0.500 6.500 11 C 0.088 3.912 12 O -0.305 6.305 13 C 0.083 3.917 14 H 0.097 0.903 15 C -0.108 4.108 16 C 0.110 3.890 17 N -0.622 5.622 18 C -0.251 4.251 19 H 0.046 0.954 20 C -0.022 4.022 21 N -0.950 5.950 22 Si 0.947 3.053 23 H -0.260 1.260 24 H -0.266 1.266 25 H -0.301 1.301 26 C 0.114 3.886 27 C -0.201 4.201 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.400 0.600 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.032 0.968 41 H 0.052 0.948 42 H 0.267 0.733 43 H 0.027 0.973 44 H 0.032 0.968 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 -6.283 23.409 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.234 3.766 3 O -0.387 6.387 4 C -0.201 4.201 5 C -0.110 4.110 6 C -0.051 4.051 7 C -0.151 4.151 8 C -0.118 4.118 9 C 0.009 3.991 10 O -0.312 6.312 11 C 0.042 3.958 12 O -0.218 6.218 13 C 0.027 3.973 14 H 0.115 0.885 15 C -0.146 4.146 16 C -0.015 4.015 17 N -0.350 5.350 18 C -0.380 4.380 19 H 0.063 0.937 20 C -0.218 4.218 21 N -0.594 5.594 22 Si 0.774 3.226 23 H -0.186 1.186 24 H -0.191 1.191 25 H -0.229 1.229 26 C -0.012 4.012 27 C -0.220 4.220 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.175 0.825 36 H 0.178 0.822 37 H 0.258 0.742 38 H 0.101 0.899 39 H 0.131 0.869 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.050 0.950 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.083 -6.063 23.170 28.303 hybrid contribution 0.358 0.772 -1.097 1.388 sum -14.725 -5.291 22.073 27.056 Atomic orbital electron populations 1.22325 0.91857 1.05618 1.06082 1.25228 0.93540 0.89801 0.68050 1.90435 1.73150 1.36864 1.38230 1.22204 0.93652 0.97368 1.06897 1.20384 0.94152 0.93001 1.03474 1.19760 0.97027 0.96036 0.92267 1.21119 1.00284 0.95518 0.98178 1.21483 0.98398 0.94920 0.96984 1.18045 1.02728 0.88455 0.89824 1.84821 1.24254 1.25893 1.96206 1.19795 0.97291 0.92641 0.86070 1.86171 1.71447 1.52004 1.12169 1.23373 0.97063 0.93876 0.83021 0.88510 1.22817 1.04616 0.96482 0.90728 1.22119 0.93859 0.88426 0.97045 1.44660 1.54203 1.34228 1.01903 1.18427 1.00751 1.23628 0.95166 0.93652 1.25944 1.01718 0.98139 0.96035 1.69954 1.35458 1.49953 1.04068 0.85822 0.81625 0.78225 0.76935 1.18570 1.19147 1.22922 1.21941 0.97585 0.96708 0.84933 1.21226 1.04682 0.96187 0.99890 0.86626 0.90488 0.87408 0.87256 0.85171 0.89790 0.92556 0.82534 0.82234 0.74222 0.89889 0.86917 0.95014 0.92982 0.92412 0.95455 0.94953 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.75 10.25 71.23 0.73 -1.02 16 2 C 0.35 5.66 7.27 29.10 0.21 5.87 16 3 O -0.51 -13.16 16.72 -1.46 -0.02 -13.19 16 4 C -0.16 -2.11 5.61 29.85 0.17 -1.95 16 5 C -0.07 -1.36 4.63 29.85 0.14 -1.22 16 6 C -0.05 -1.03 5.13 -19.86 -0.10 -1.13 16 7 C -0.13 -2.19 9.69 22.27 0.22 -1.97 16 8 C -0.10 -1.78 9.98 22.35 0.22 -1.56 16 9 C 0.05 1.32 6.72 22.57 0.15 1.47 16 10 O -0.50 -11.65 13.29 -79.61 -1.06 -12.70 16 11 C 0.09 2.47 6.64 22.57 0.15 2.62 16 12 O -0.30 -9.76 9.66 -79.55 -0.77 -10.53 16 13 C 0.08 2.73 2.77 31.78 0.09 2.82 16 14 H 0.10 2.81 6.60 -2.39 -0.02 2.79 16 15 C -0.11 -3.46 6.82 32.06 0.22 -3.25 16 16 C 0.11 4.54 4.87 86.93 0.42 4.96 16 17 N -0.62 -30.71 3.03 -691.57 -2.10 -32.80 16 18 C -0.25 -14.92 10.51 84.03 0.88 -14.03 16 19 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 20 C -0.02 -1.31 5.43 84.86 0.46 -0.85 16 21 N -0.95 -60.25 13.97 21.65 0.30 -59.94 16 22 Si 0.95 46.11 24.55 68.60 1.68 47.80 16 23 H -0.26 -11.68 6.98 99.48 0.69 -10.99 16 24 H -0.27 -12.46 6.98 99.48 0.69 -11.77 16 25 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 26 C 0.11 4.71 6.50 86.73 0.56 5.27 16 27 C -0.20 -5.17 8.42 22.35 0.19 -4.98 16 28 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 0.48 8.12 -2.38 -0.02 0.46 16 31 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.49 8.04 -2.39 -0.02 1.47 16 34 H 0.06 1.34 8.04 -2.39 -0.02 1.32 16 35 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.40 6.19 9.06 -74.06 -0.67 5.52 16 38 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 39 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.03 1.30 5.50 -2.39 -0.01 1.28 16 41 H 0.05 2.27 7.85 -2.39 -0.02 2.25 16 42 H 0.27 15.90 8.31 -92.70 -0.77 15.13 16 43 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 44 H 0.03 1.35 7.42 -2.39 -0.02 1.33 16 45 H 0.12 3.41 5.31 -2.91 -0.02 3.40 16 Total: -1.00 -78.59 368.86 3.06 -75.53 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.31 Total: 14.80 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.71 Total: -8.96 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -1.80 Total: -92.75 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.85 Total: -36.42 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.68 Total: 47.80 kcal Total: -78.59 3.06 -75.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230392244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.051 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds