Wall clock time and date at job start Sat Apr 11 2020 00:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47269 * 2 1 4 4 C 1.46507 * 119.99574 * 272.06685 * 3 2 1 5 5 C 1.53000 * 109.47105 * 269.99648 * 4 3 2 6 6 C 1.50694 * 109.47022 * 179.97438 * 5 4 3 7 7 O 1.20825 * 120.00440 * 0.02562 * 6 5 4 8 8 O 1.34235 * 120.00002 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00016 * 180.02562 * 8 6 5 10 10 C 1.34776 * 120.00584 * 92.07126 * 3 2 1 11 11 O 1.21277 * 120.00439 * 184.40540 * 10 3 2 12 12 C 1.50699 * 119.99595 * 4.39813 * 10 3 2 13 13 H 1.08999 * 109.47288 * 328.57781 * 12 10 3 14 14 C 1.50701 * 109.47022 * 88.58154 * 12 10 3 15 15 H 1.08004 * 119.99798 * 240.39871 * 14 12 10 16 16 C 1.37875 * 120.00223 * 60.40016 * 14 12 10 17 17 N 1.31514 * 119.99925 * 356.29055 * 16 14 12 18 18 Si 1.86803 * 119.99922 * 176.29426 * 16 14 12 19 19 H 1.48497 * 109.47148 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46965 * 120.00233 * 18 16 14 21 21 H 1.48500 * 109.46652 * 239.99954 * 18 16 14 22 22 C 1.50703 * 109.47240 * 208.57683 * 12 10 3 23 23 C 1.38238 * 119.99596 * 38.04028 * 22 12 10 24 24 C 1.38240 * 119.99636 * 180.02562 * 23 22 12 25 25 C 1.38232 * 119.99978 * 359.95253 * 24 23 22 26 26 C 1.38234 * 120.00184 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00072 * 0.06367 * 26 25 24 28 28 H 1.09001 * 109.47204 * 300.00971 * 1 2 3 29 29 H 1.09000 * 109.46475 * 60.00305 * 1 2 3 30 30 H 1.08996 * 109.47107 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47204 * 239.99029 * 2 1 3 32 32 H 1.09000 * 109.46475 * 119.99695 * 2 1 3 33 33 H 1.08994 * 109.47312 * 30.00048 * 4 3 2 34 34 H 1.09005 * 109.46682 * 150.00237 * 4 3 2 35 35 H 1.08998 * 109.47515 * 300.00849 * 5 4 3 36 36 H 1.09005 * 109.46870 * 60.00704 * 5 4 3 37 37 H 1.09000 * 109.46747 * 299.99811 * 9 8 6 38 38 H 1.08993 * 109.47258 * 59.99665 * 9 8 6 39 39 H 1.08998 * 109.47000 * 180.02562 * 9 8 6 40 40 H 0.96996 * 120.00009 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.00595 * 359.97438 * 23 22 12 42 42 H 1.08005 * 119.99694 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99420 * 179.72592 * 25 24 23 44 44 H 1.08005 * 119.99993 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00096 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2194 2.0869 -1.2680 5 6 3.6485 1.8522 -1.7614 6 6 3.8550 2.5776 -3.0660 7 8 2.9521 3.2173 -3.5512 8 8 5.0422 2.5132 -3.6891 9 6 5.1696 3.2371 -4.9414 10 6 2.2828 2.0025 1.1664 11 8 2.6102 3.1703 1.1708 12 6 2.1714 1.2463 2.4651 13 1 1.3941 0.4872 2.3780 14 6 3.4888 0.5831 2.7747 15 1 3.5436 -0.4916 2.8680 16 6 4.6240 1.3481 2.9390 17 7 4.5727 2.6491 2.7537 18 14 6.2350 0.5366 3.4245 19 1 6.0277 -0.9265 3.5713 20 1 7.2532 0.7899 2.3737 21 1 6.7044 1.1015 4.7151 22 6 1.8176 2.2027 3.5746 23 6 0.9339 3.2391 3.3381 24 6 0.6097 4.1168 4.3558 25 6 1.1685 3.9575 5.6101 26 6 2.0519 2.9209 5.8466 27 6 2.3775 2.0443 4.8286 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.5131 1.7119 -2.0086 34 1 2.0572 3.1545 -1.1192 35 1 4.3548 2.2272 -1.0208 36 1 3.8107 0.7846 -1.9102 37 1 4.4419 2.8551 -5.6574 38 1 4.9868 4.2976 -4.7683 39 1 6.1755 3.1015 -5.3387 40 1 5.3714 3.1873 2.8689 41 1 0.4973 3.3636 2.3582 42 1 -0.0804 4.9267 4.1709 43 1 0.9186 4.6459 6.4038 44 1 2.4888 2.7967 6.8265 45 1 3.0679 1.2347 5.0133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433192649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:58 Heat of formation + Delta-G solvation = -89.995629 kcal Electronic energy + Delta-G solvation = -27910.825715 eV Core-core repulsion = 24086.858918 eV Total energy + Delta-G solvation = -3823.966796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.35629 -39.20327 -37.71444 -36.44871 -35.06270 -33.60712 -32.12011 -30.72586 -29.73053 -29.35160 -27.84643 -27.10189 -24.47503 -23.45092 -22.55595 -21.32223 -20.80942 -20.10666 -18.14715 -17.42420 -16.89327 -16.49470 -16.45511 -15.85587 -15.62734 -14.96046 -14.68617 -14.05077 -13.94432 -13.78464 -13.66047 -13.36154 -13.04826 -12.74663 -12.55098 -12.49236 -12.29727 -12.18503 -12.02973 -11.69082 -11.54332 -11.51212 -11.20178 -10.96743 -10.80390 -10.73172 -10.67073 -10.62074 -10.37152 -10.34665 -10.04680 -9.64180 -9.36198 -8.68450 -8.20327 -7.83572 -7.72419 -7.38980 -6.01122 -4.23065 2.34754 2.52207 2.57384 2.78879 3.22149 3.32809 3.33204 3.95334 4.16000 4.36987 4.94843 4.98351 5.05980 5.12584 5.18622 5.27670 5.32608 5.42851 5.49076 5.71789 5.74704 5.76782 5.83689 5.92392 6.01248 6.05396 6.12491 6.22724 6.32550 6.37265 6.45977 6.54497 6.60033 6.64880 6.75213 6.82936 7.12882 7.17050 7.42842 7.52152 7.61310 7.72725 7.80032 7.86410 8.13305 8.24586 8.45051 8.79441 9.42750 9.69725 10.93221 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.004690 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.804634 B = 5968.304446 C = 6806.027616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 N -0.629 5.629 4 C 0.137 3.863 5 C -0.130 4.130 6 C 0.469 3.531 7 O -0.513 6.513 8 O -0.362 6.362 9 C 0.035 3.965 10 C 0.529 3.471 11 O -0.504 6.504 12 C 0.063 3.937 13 H 0.053 0.947 14 C -0.542 4.542 15 H 0.066 0.934 16 C 0.075 3.925 17 N -0.817 5.817 18 Si 0.879 3.121 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.003 4.003 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.074 4.074 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.261 0.739 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.563 -3.830 -7.313 8.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.015 4.015 3 N -0.366 5.366 4 C 0.012 3.988 5 C -0.169 4.169 6 C 0.312 3.688 7 O -0.401 6.401 8 O -0.278 6.278 9 C -0.059 4.059 10 C 0.319 3.681 11 O -0.375 6.375 12 C 0.042 3.958 13 H 0.071 0.929 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.135 4.135 17 N -0.448 5.448 18 Si 0.706 3.294 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.004 4.004 23 C -0.129 4.129 24 C -0.155 4.155 25 C -0.166 4.166 26 C -0.160 4.160 27 C -0.092 4.092 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.523 -2.744 -7.448 8.684 hybrid contribution 1.279 -0.121 -0.116 1.290 sum -2.243 -2.865 -7.564 8.394 Atomic orbital electron populations 1.22233 0.97140 1.01345 1.02124 1.21440 0.93227 0.83650 1.03141 1.48145 1.68999 1.14160 1.05276 1.20867 0.92107 0.99579 0.86204 1.21923 1.02522 1.01300 0.91174 1.23973 0.79694 0.78688 0.86424 1.90638 1.42988 1.40147 1.66346 1.86554 1.36652 1.67898 1.36743 1.23212 1.02851 0.96582 0.83221 1.21507 0.74762 0.87023 0.84821 1.90617 1.43808 1.16669 1.86404 1.17936 0.97874 0.92569 0.87426 0.92872 1.20600 0.91142 0.93236 1.52935 0.91574 1.25097 0.98730 0.94888 0.94805 1.70249 1.28427 1.03806 1.42357 0.86737 0.84299 0.79864 0.78492 1.19545 1.21032 1.20790 1.19860 0.91518 0.94357 0.94684 1.20891 0.98887 0.95692 0.97449 1.20807 1.01419 0.99482 0.93801 1.20754 1.00152 0.99043 0.96649 1.20986 0.99480 0.96825 0.98690 1.21050 0.97253 0.98741 0.92194 0.92298 0.93087 0.92262 0.92055 0.88832 0.91176 0.89660 0.86668 0.87964 0.92112 0.91987 0.88382 0.92830 0.88051 0.88096 0.88155 0.87975 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.13 37.16 0.38 -1.80 16 2 C 0.11 1.62 5.75 -4.05 -0.02 1.60 16 3 N -0.63 -11.60 2.47 -173.69 -0.43 -12.03 16 4 C 0.14 2.35 4.74 -4.04 -0.02 2.33 16 5 C -0.13 -2.10 6.13 -27.89 -0.17 -2.27 16 6 C 0.47 7.49 7.96 36.00 0.29 7.78 16 7 O -0.51 -9.12 15.73 -18.75 -0.29 -9.41 16 8 O -0.36 -5.24 10.57 -39.27 -0.41 -5.65 16 9 C 0.04 0.38 10.56 101.05 1.07 1.44 16 10 C 0.53 11.98 5.35 -10.99 -0.06 11.92 16 11 O -0.50 -13.27 12.83 5.56 0.07 -13.20 16 12 C 0.06 1.43 1.99 -94.07 -0.19 1.24 16 13 H 0.05 1.09 6.07 -51.93 -0.32 0.77 16 14 C -0.54 -13.01 6.94 -34.44 -0.24 -13.25 16 15 H 0.07 1.55 7.82 -52.48 -0.41 1.14 16 16 C 0.07 1.88 4.18 -17.82 -0.07 1.81 16 17 N -0.82 -22.27 9.97 55.43 0.55 -21.72 16 18 Si 0.88 19.77 29.54 -169.99 -5.02 14.75 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.00 -0.07 4.27 -104.62 -0.45 -0.52 16 23 C -0.11 -2.47 8.42 -39.58 -0.33 -2.80 16 24 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 26 C -0.14 -2.89 10.05 -39.59 -0.40 -3.29 16 27 C -0.07 -1.69 8.35 -39.59 -0.33 -2.02 16 28 H 0.06 0.83 7.83 -51.93 -0.41 0.42 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.09 1.50 5.94 -51.93 -0.31 1.19 16 33 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 34 H 0.09 1.69 7.32 -51.93 -0.38 1.31 16 35 H 0.12 2.18 8.14 -51.93 -0.42 1.76 16 36 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.10 2.25 7.05 -52.49 -0.37 1.88 16 42 H 0.10 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 45 H 0.13 2.89 6.47 -52.49 -0.34 2.55 16 LS Contribution 371.44 15.07 5.60 5.60 Total: -1.00 -30.73 371.44 -8.02 -38.75 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -6.73 Total: 7.20 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.35 Total: -4.29 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.12 Total: -33.75 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.64 Total: -28.26 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.73 -8.02 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433192649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.247 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds