Wall clock time and date at job start Sat Apr 11 2020 00:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47269 * 2 1 4 4 C 1.46507 * 119.99574 * 272.06685 * 3 2 1 5 5 C 1.53000 * 109.47105 * 269.99648 * 4 3 2 6 6 C 1.50694 * 109.47022 * 179.97438 * 5 4 3 7 7 O 1.20825 * 120.00440 * 0.02562 * 6 5 4 8 8 O 1.34235 * 120.00002 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00016 * 180.02562 * 8 6 5 10 10 C 1.34776 * 120.00584 * 92.07126 * 3 2 1 11 11 O 1.21277 * 120.00439 * 184.40540 * 10 3 2 12 12 C 1.50699 * 119.99595 * 4.39813 * 10 3 2 13 13 H 1.08999 * 109.47288 * 328.57781 * 12 10 3 14 14 C 1.50701 * 109.47022 * 88.58154 * 12 10 3 15 15 H 1.08004 * 119.99798 * 240.39871 * 14 12 10 16 16 C 1.37875 * 120.00223 * 60.40016 * 14 12 10 17 17 N 1.31514 * 119.99925 * 356.29055 * 16 14 12 18 18 Si 1.86803 * 119.99922 * 176.29426 * 16 14 12 19 19 H 1.48497 * 109.47148 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46965 * 120.00233 * 18 16 14 21 21 H 1.48500 * 109.46652 * 239.99954 * 18 16 14 22 22 C 1.50703 * 109.47240 * 208.57683 * 12 10 3 23 23 C 1.38238 * 119.99596 * 38.04028 * 22 12 10 24 24 C 1.38240 * 119.99636 * 180.02562 * 23 22 12 25 25 C 1.38232 * 119.99978 * 359.95253 * 24 23 22 26 26 C 1.38234 * 120.00184 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00072 * 0.06367 * 26 25 24 28 28 H 1.09001 * 109.47204 * 300.00971 * 1 2 3 29 29 H 1.09000 * 109.46475 * 60.00305 * 1 2 3 30 30 H 1.08996 * 109.47107 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47204 * 239.99029 * 2 1 3 32 32 H 1.09000 * 109.46475 * 119.99695 * 2 1 3 33 33 H 1.08994 * 109.47312 * 30.00048 * 4 3 2 34 34 H 1.09005 * 109.46682 * 150.00237 * 4 3 2 35 35 H 1.08998 * 109.47515 * 300.00849 * 5 4 3 36 36 H 1.09005 * 109.46870 * 60.00704 * 5 4 3 37 37 H 1.09000 * 109.46747 * 299.99811 * 9 8 6 38 38 H 1.08993 * 109.47258 * 59.99665 * 9 8 6 39 39 H 1.08998 * 109.47000 * 180.02562 * 9 8 6 40 40 H 0.96996 * 120.00009 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.00595 * 359.97438 * 23 22 12 42 42 H 1.08005 * 119.99694 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99420 * 179.72592 * 25 24 23 44 44 H 1.08005 * 119.99993 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00096 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2194 2.0869 -1.2680 5 6 3.6485 1.8522 -1.7614 6 6 3.8550 2.5776 -3.0660 7 8 2.9521 3.2173 -3.5512 8 8 5.0422 2.5132 -3.6891 9 6 5.1696 3.2371 -4.9414 10 6 2.2828 2.0025 1.1664 11 8 2.6102 3.1703 1.1708 12 6 2.1714 1.2463 2.4651 13 1 1.3941 0.4872 2.3780 14 6 3.4888 0.5831 2.7747 15 1 3.5436 -0.4916 2.8680 16 6 4.6240 1.3481 2.9390 17 7 4.5727 2.6491 2.7537 18 14 6.2350 0.5366 3.4245 19 1 6.0277 -0.9265 3.5713 20 1 7.2532 0.7899 2.3737 21 1 6.7044 1.1015 4.7151 22 6 1.8176 2.2027 3.5746 23 6 0.9339 3.2391 3.3381 24 6 0.6097 4.1168 4.3558 25 6 1.1685 3.9575 5.6101 26 6 2.0519 2.9209 5.8466 27 6 2.3775 2.0443 4.8286 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.5131 1.7119 -2.0086 34 1 2.0572 3.1545 -1.1192 35 1 4.3548 2.2272 -1.0208 36 1 3.8107 0.7846 -1.9102 37 1 4.4419 2.8551 -5.6574 38 1 4.9868 4.2976 -4.7683 39 1 6.1755 3.1015 -5.3387 40 1 5.3714 3.1873 2.8689 41 1 0.4973 3.3636 2.3582 42 1 -0.0804 4.9267 4.1709 43 1 0.9186 4.6459 6.4038 44 1 2.4888 2.7967 6.8265 45 1 3.0679 1.2347 5.0133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433192649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:58 Heat of formation + Delta-G solvation = -105.756400 kcal Electronic energy + Delta-G solvation = -27911.509153 eV Core-core repulsion = 24086.858918 eV Total energy + Delta-G solvation = -3824.650235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61664 -40.82962 -39.29644 -37.69009 -36.62189 -35.40369 -33.52183 -32.43380 -31.37866 -30.63542 -29.25339 -28.42352 -26.11559 -24.92017 -23.91213 -22.97171 -22.21403 -21.59969 -19.70540 -18.76896 -18.53201 -17.78882 -17.71433 -17.37864 -17.23768 -16.60424 -16.35936 -15.52732 -15.40935 -15.29544 -15.14177 -14.61220 -14.33004 -14.23156 -14.06978 -13.95945 -13.81207 -13.72126 -13.25631 -13.13921 -13.04138 -12.83320 -12.78627 -12.61991 -12.42127 -12.18262 -12.09196 -11.83755 -11.77571 -11.72563 -11.66310 -11.35553 -11.13274 -10.60851 -9.98867 -9.43109 -9.30739 -9.06036 -7.93053 -6.17970 0.87284 0.93249 1.07284 1.41177 1.47461 1.54764 1.62986 2.38697 2.52777 2.57286 3.26914 3.34052 3.74053 3.91975 4.05535 4.26195 4.27706 4.29725 4.31135 4.35275 4.42706 4.48485 4.51960 4.58017 4.65555 4.69530 4.77104 4.84526 4.96839 4.99563 5.04384 5.10450 5.14366 5.19198 5.29292 5.47545 5.48261 5.55177 5.75553 5.88580 5.94915 6.01295 6.03157 6.42885 6.53288 6.63389 6.72913 7.01891 7.49504 8.00397 8.99175 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.004690 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.804634 B = 5968.304446 C = 6806.027616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.102 3.898 3 N -0.627 5.627 4 C 0.141 3.859 5 C -0.122 4.122 6 C 0.475 3.525 7 O -0.534 6.534 8 O -0.368 6.368 9 C 0.027 3.973 10 C 0.529 3.471 11 O -0.550 6.550 12 C 0.057 3.943 13 H 0.068 0.932 14 C -0.535 4.535 15 H 0.071 0.929 16 C 0.038 3.962 17 N -0.849 5.849 18 Si 0.930 3.070 19 H -0.257 1.257 20 H -0.292 1.292 21 H -0.288 1.288 22 C -0.023 4.023 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.096 4.096 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.129 0.871 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.132 0.868 40 H 0.250 0.750 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 -5.062 -7.741 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.020 4.020 3 N -0.362 5.362 4 C 0.017 3.983 5 C -0.160 4.160 6 C 0.319 3.681 7 O -0.424 6.424 8 O -0.284 6.284 9 C -0.066 4.066 10 C 0.319 3.681 11 O -0.425 6.425 12 C 0.036 3.964 13 H 0.086 0.914 14 C -0.573 4.573 15 H 0.089 0.911 16 C -0.168 4.168 17 N -0.482 5.482 18 Si 0.757 3.243 19 H -0.181 1.181 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.024 4.024 23 C -0.147 4.147 24 C -0.159 4.159 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.114 4.114 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.145 0.855 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.899 -4.041 -7.900 9.692 hybrid contribution 1.352 0.244 -0.036 1.374 sum -2.547 -3.797 -7.936 9.158 Atomic orbital electron populations 1.22161 0.95334 1.03061 1.01509 1.21704 0.94692 0.81519 1.04085 1.48112 1.67996 1.15450 1.04617 1.20847 0.93581 0.97735 0.86108 1.21751 1.00826 1.02850 0.90622 1.23785 0.79938 0.78114 0.86232 1.90628 1.43800 1.40971 1.66998 1.86528 1.35499 1.68194 1.38203 1.23572 1.05251 0.96012 0.81747 1.21442 0.74215 0.86497 0.85931 1.90584 1.46086 1.18575 1.87252 1.18007 0.97695 0.92975 0.87703 0.91430 1.20829 0.91630 0.93363 1.51444 0.91094 1.25622 1.01169 0.95035 0.94977 1.70444 1.28170 1.05059 1.44509 0.85928 0.81190 0.79739 0.77437 1.18114 1.21833 1.21424 1.19983 0.92259 0.95094 0.95054 1.20935 0.99563 0.96486 0.97748 1.21166 1.01527 0.99481 0.93699 1.21152 0.98984 0.98982 0.97214 1.21321 0.99324 0.96352 0.99275 1.21069 0.97911 0.99534 0.92933 0.94187 0.92429 0.89349 0.88926 0.90046 0.88363 0.92980 0.89866 0.85268 0.91167 0.92431 0.85025 0.94091 0.89072 0.85498 0.84483 0.85399 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.13 71.98 0.73 -3.12 16 2 C 0.10 2.87 5.75 86.38 0.50 3.37 16 3 N -0.63 -23.09 2.47 -821.82 -2.03 -25.12 16 4 C 0.14 4.85 4.74 86.38 0.41 5.26 16 5 C -0.12 -3.90 6.13 29.85 0.18 -3.72 16 6 C 0.48 14.97 7.96 71.23 0.57 15.54 16 7 O -0.53 -18.80 15.73 21.97 0.35 -18.45 16 8 O -0.37 -10.24 10.57 -51.47 -0.54 -10.79 16 9 C 0.03 0.53 10.56 113.37 1.20 1.73 16 10 C 0.53 24.60 5.35 87.66 0.47 25.07 16 11 O -0.55 -30.30 12.83 -3.02 -0.04 -30.34 16 12 C 0.06 2.64 1.99 -13.03 -0.03 2.62 16 13 H 0.07 2.80 6.07 -2.39 -0.01 2.79 16 14 C -0.53 -25.91 6.94 25.60 0.18 -25.73 16 15 H 0.07 3.29 7.82 -2.91 -0.02 3.27 16 16 C 0.04 1.95 4.18 84.65 0.35 2.31 16 17 N -0.85 -47.76 9.97 21.45 0.21 -47.55 16 18 Si 0.93 41.01 29.54 68.60 2.03 43.04 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 22 C -0.02 -1.08 4.27 -19.86 -0.08 -1.17 16 23 C -0.13 -5.85 8.42 22.27 0.19 -5.67 16 24 C -0.14 -5.58 10.05 22.27 0.22 -5.36 16 25 C -0.15 -5.38 10.05 22.27 0.22 -5.16 16 26 C -0.14 -5.75 10.05 22.27 0.22 -5.53 16 27 C -0.10 -4.41 8.35 22.27 0.19 -4.22 16 28 H 0.04 1.09 7.83 -2.39 -0.02 1.08 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 2.04 8.09 -2.39 -0.02 2.02 16 32 H 0.08 2.51 5.94 -2.39 -0.01 2.50 16 33 H 0.10 2.80 8.03 -2.39 -0.02 2.78 16 34 H 0.05 2.15 7.32 -2.38 -0.02 2.13 16 35 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.13 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 38 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 39 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 41 H 0.09 4.21 7.05 -2.91 -0.02 4.19 16 42 H 0.13 4.26 8.06 -2.91 -0.02 4.23 16 43 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 44 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.11 5.30 6.47 -2.91 -0.02 5.28 16 Total: -1.00 -68.61 371.44 6.47 -62.15 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.98 Total: 30.85 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 5.52 Total: -3.78 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.82 Total: -72.67 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -0.24 Total: -59.58 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -68.61 6.47 -62.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433192649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.611 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds