Wall clock time and date at job start Sat Apr 11 2020 00:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47064 * 2 1 4 4 C 1.46504 * 119.99783 * 268.04020 * 3 2 1 5 5 C 1.53007 * 109.47190 * 269.99916 * 4 3 2 6 6 C 1.50697 * 109.46847 * 180.02562 * 5 4 3 7 7 O 1.20822 * 120.00289 * 0.02562 * 6 5 4 8 8 O 1.34235 * 119.99455 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99471 * 180.02562 * 8 6 5 10 10 C 1.34772 * 119.99932 * 88.04341 * 3 2 1 11 11 O 1.21287 * 119.99895 * 184.70441 * 10 3 2 12 12 C 1.50702 * 120.00239 * 4.70479 * 10 3 2 13 13 H 1.09003 * 109.46756 * 31.31186 * 12 10 3 14 14 C 1.50700 * 109.47034 * 271.31301 * 12 10 3 15 15 H 1.07998 * 119.99529 * 116.83434 * 14 12 10 16 16 C 1.37876 * 120.00004 * 296.55999 * 14 12 10 17 17 N 1.31514 * 119.99811 * 5.00041 * 16 14 12 18 18 Si 1.86798 * 119.99809 * 184.99824 * 16 14 12 19 19 H 1.48494 * 109.47208 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46806 * 120.00081 * 18 16 14 21 21 H 1.48503 * 109.47382 * 239.99801 * 18 16 14 22 22 C 1.50699 * 109.47257 * 151.31032 * 12 10 3 23 23 C 1.38234 * 120.00112 * 321.54977 * 22 12 10 24 24 C 1.38238 * 119.99564 * 179.81023 * 23 22 12 25 25 C 1.38233 * 120.00309 * 0.39224 * 24 23 22 26 26 C 1.38231 * 119.99621 * 359.85698 * 25 24 23 27 27 C 1.38233 * 119.99639 * 141.81728 * 22 12 10 28 28 H 1.08992 * 109.46964 * 64.34091 * 1 2 3 29 29 H 1.09003 * 109.46670 * 184.34147 * 1 2 3 30 30 H 1.08995 * 109.46989 * 304.33843 * 1 2 3 31 31 H 1.09001 * 109.47210 * 239.99804 * 2 1 3 32 32 H 1.09002 * 109.47011 * 120.00147 * 2 1 3 33 33 H 1.08999 * 109.47205 * 30.00137 * 4 3 2 34 34 H 1.09005 * 109.46742 * 150.00303 * 4 3 2 35 35 H 1.08999 * 109.47227 * 300.00208 * 5 4 3 36 36 H 1.08997 * 109.46720 * 60.00365 * 5 4 3 37 37 H 1.09000 * 109.47002 * 300.00155 * 9 8 6 38 38 H 1.08996 * 109.47338 * 59.99774 * 9 8 6 39 39 H 1.09002 * 109.46737 * 180.02562 * 9 8 6 40 40 H 0.97004 * 119.99478 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.00035 * 359.97438 * 23 22 12 42 42 H 1.08010 * 119.99428 * 180.22818 * 24 23 22 43 43 H 1.08002 * 119.99657 * 179.84042 * 25 24 23 44 44 H 1.08006 * 119.99434 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00492 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3034 2.0573 -1.2680 5 6 3.7619 1.8122 -1.6602 6 6 4.0552 2.5082 -2.9642 7 8 3.1871 3.1363 -3.5224 8 8 5.2814 2.4312 -3.5050 9 6 5.4922 3.1267 -4.7621 10 6 2.2054 2.0298 1.1665 11 8 2.5274 3.1991 1.1653 12 6 2.0144 1.3022 2.4723 13 1 2.2784 0.2523 2.3451 14 6 0.5737 1.4096 2.9012 15 1 -0.0328 0.5199 2.9838 16 6 0.0316 2.6432 3.1936 17 7 0.7406 3.7346 3.0042 18 14 -1.7098 2.7642 3.8585 19 1 -2.2889 1.4022 3.9803 20 1 -1.6855 3.4125 5.1944 21 1 -2.5390 3.5741 2.9303 22 6 2.8993 1.9186 3.5250 23 6 4.1719 2.3455 3.1947 24 6 4.9821 2.9145 4.1595 25 6 4.5226 3.0493 5.4563 26 6 3.2518 2.6177 5.7876 27 6 2.4403 2.0521 4.8220 28 1 -0.3633 0.4450 -0.9263 29 1 -0.3633 -1.0248 0.0778 30 1 -0.3633 0.5797 0.8485 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6474 1.6645 -2.0448 34 1 2.1325 3.1280 -1.1553 35 1 4.4180 2.2051 -0.8834 36 1 3.9327 0.7416 -1.7729 37 1 4.8138 2.7277 -5.5162 38 1 5.2985 4.1906 -4.6256 39 1 6.5223 2.9834 -5.0882 40 1 0.3590 4.6024 3.2095 41 1 4.5322 2.2368 2.1824 42 1 5.9751 3.2514 3.9006 43 1 5.1566 3.4915 6.2106 44 1 2.8930 2.7226 6.8009 45 1 1.4474 1.7151 5.0809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433192651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:01 Heat of formation + Delta-G solvation = -88.124507 kcal Electronic energy + Delta-G solvation = -27894.857938 eV Core-core repulsion = 24070.972279 eV Total energy + Delta-G solvation = -3823.885659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44161 -39.21662 -37.72010 -36.52898 -35.03269 -33.67586 -32.08302 -30.74422 -29.71852 -29.24766 -27.85006 -27.15244 -24.57300 -23.27180 -22.62211 -21.32248 -20.85316 -20.14171 -18.17220 -17.51095 -16.83994 -16.61943 -16.47514 -15.94394 -15.54324 -14.97966 -14.74219 -14.15183 -14.05133 -13.75211 -13.47298 -13.34674 -12.96178 -12.78744 -12.68539 -12.40959 -12.27973 -12.12143 -12.10247 -11.67541 -11.58878 -11.29696 -11.19148 -10.94364 -10.86640 -10.74365 -10.66622 -10.53009 -10.44969 -10.34550 -10.04284 -9.58508 -9.34997 -8.65678 -8.20836 -7.82264 -7.72979 -7.37473 -6.00511 -4.20320 2.25870 2.51938 2.57660 2.69231 3.23452 3.33849 3.34455 3.93198 4.16391 4.38341 4.85751 4.96406 4.99605 5.06059 5.16269 5.22787 5.24591 5.41433 5.51422 5.63075 5.82154 5.83846 5.88488 5.93116 5.98664 6.04018 6.21063 6.29470 6.35685 6.40007 6.46998 6.57804 6.63615 6.77255 6.83898 7.05746 7.13286 7.17415 7.44512 7.51673 7.61241 7.74036 7.77990 7.80906 8.13488 8.24910 8.45051 8.80636 9.43816 9.68112 10.94529 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.004650 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.093774 B = 6020.552900 C = 7351.957329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.119 3.881 3 N -0.630 5.630 4 C 0.133 3.867 5 C -0.128 4.128 6 C 0.467 3.533 7 O -0.508 6.508 8 O -0.363 6.363 9 C 0.035 3.965 10 C 0.528 3.472 11 O -0.506 6.506 12 C 0.063 3.937 13 H 0.053 0.947 14 C -0.539 4.539 15 H 0.068 0.932 16 C 0.075 3.925 17 N -0.817 5.817 18 Si 0.878 3.122 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.285 1.285 22 C -0.001 4.001 23 C -0.112 4.112 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.072 4.072 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.261 0.739 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.094 -6.751 -7.465 12.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.004 4.004 3 N -0.367 5.367 4 C 0.008 3.992 5 C -0.167 4.167 6 C 0.309 3.691 7 O -0.395 6.395 8 O -0.280 6.280 9 C -0.059 4.059 10 C 0.318 3.682 11 O -0.378 6.378 12 C 0.042 3.958 13 H 0.071 0.929 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.448 5.448 18 Si 0.705 3.295 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.211 1.211 22 C -0.002 4.002 23 C -0.131 4.131 24 C -0.155 4.155 25 C -0.166 4.166 26 C -0.160 4.160 27 C -0.090 4.090 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.034 -5.640 -7.614 11.801 hybrid contribution -1.123 0.546 -0.028 1.249 sum 5.912 -5.094 -7.642 10.923 Atomic orbital electron populations 1.22356 0.96340 1.01521 1.03612 1.21341 0.94690 0.82969 1.01410 1.48194 1.69058 1.14209 1.05247 1.20885 0.91166 1.00394 0.86721 1.21907 1.01712 1.01584 0.91534 1.23890 0.79792 0.78440 0.86936 1.90668 1.46743 1.39675 1.62408 1.86530 1.34138 1.69036 1.38297 1.23224 1.02461 0.97091 0.83099 1.21604 0.74176 0.87689 0.84721 1.90622 1.45037 1.15707 1.86415 1.17940 0.96358 0.93707 0.87777 0.92893 1.20569 0.94076 0.93438 1.49519 0.91402 1.25086 0.97204 0.96128 0.95093 1.70231 1.35434 0.97541 1.41549 0.86754 0.85363 0.78385 0.79008 1.19470 1.20766 1.21088 1.19802 0.91618 0.94217 0.94537 1.20853 0.94734 0.99792 0.97672 1.20790 0.99068 1.01892 0.93743 1.20746 0.96550 1.03197 0.96104 1.20984 0.94739 1.01514 0.98734 1.21049 0.98645 0.96814 0.92469 0.93929 0.93046 0.88907 0.92520 0.90243 0.91075 0.89409 0.87331 0.87914 0.92054 0.91931 0.88322 0.92818 0.88180 0.88127 0.88192 0.88021 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 10.22 37.16 0.38 -2.45 16 2 C 0.12 1.80 5.97 -4.04 -0.02 1.78 16 3 N -0.63 -11.59 2.47 -173.67 -0.43 -12.02 16 4 C 0.13 2.25 4.72 -4.04 -0.02 2.23 16 5 C -0.13 -1.79 6.14 -27.88 -0.17 -1.96 16 6 C 0.47 6.81 7.96 36.00 0.29 7.10 16 7 O -0.51 -8.74 15.73 -18.75 -0.29 -9.03 16 8 O -0.36 -4.64 10.57 -39.27 -0.41 -5.05 16 9 C 0.04 0.33 10.56 101.05 1.07 1.40 16 10 C 0.53 11.90 5.42 -10.99 -0.06 11.84 16 11 O -0.51 -13.32 13.01 5.55 0.07 -13.24 16 12 C 0.06 1.42 2.15 -94.07 -0.20 1.22 16 13 H 0.05 1.07 6.02 -51.93 -0.31 0.76 16 14 C -0.54 -12.83 5.46 -34.44 -0.19 -13.02 16 15 H 0.07 1.57 7.52 -52.49 -0.39 1.18 16 16 C 0.08 1.90 4.02 -17.82 -0.07 1.83 16 17 N -0.82 -22.52 9.94 55.43 0.55 -21.97 16 18 Si 0.88 19.95 29.54 -169.99 -5.02 14.93 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.00 -0.02 4.20 -104.63 -0.44 -0.46 16 23 C -0.11 -2.45 8.43 -39.58 -0.33 -2.78 16 24 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 25 C -0.15 -2.86 10.05 -39.59 -0.40 -3.25 16 26 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 27 C -0.07 -1.62 8.16 -39.58 -0.32 -1.94 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.79 5.71 -51.93 -0.30 1.50 16 31 H 0.06 0.68 8.06 -51.93 -0.42 0.27 16 32 H 0.08 1.19 5.82 -51.93 -0.30 0.88 16 33 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 34 H 0.09 1.80 7.32 -51.93 -0.38 1.42 16 35 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 38 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.10 2.13 7.09 -52.49 -0.37 1.75 16 42 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 44 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.13 2.89 6.37 -52.49 -0.33 2.55 16 LS Contribution 367.51 15.07 5.54 5.54 Total: -1.00 -31.03 367.51 -7.88 -38.91 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.59 Total: 6.81 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.29 Total: -4.87 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.12 Total: -33.99 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.64 Total: -27.33 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.03 -7.88 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433192651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.211 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds