Wall clock time and date at job start Sat Apr 11 2020 00:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47064 * 2 1 4 4 C 1.46504 * 119.99783 * 268.04020 * 3 2 1 5 5 C 1.53007 * 109.47190 * 269.99916 * 4 3 2 6 6 C 1.50697 * 109.46847 * 180.02562 * 5 4 3 7 7 O 1.20822 * 120.00289 * 0.02562 * 6 5 4 8 8 O 1.34235 * 119.99455 * 179.97438 * 6 5 4 9 9 C 1.45202 * 116.99471 * 180.02562 * 8 6 5 10 10 C 1.34772 * 119.99932 * 88.04341 * 3 2 1 11 11 O 1.21287 * 119.99895 * 184.70441 * 10 3 2 12 12 C 1.50702 * 120.00239 * 4.70479 * 10 3 2 13 13 H 1.09003 * 109.46756 * 31.31186 * 12 10 3 14 14 C 1.50700 * 109.47034 * 271.31301 * 12 10 3 15 15 H 1.07998 * 119.99529 * 116.83434 * 14 12 10 16 16 C 1.37876 * 120.00004 * 296.55999 * 14 12 10 17 17 N 1.31514 * 119.99811 * 5.00041 * 16 14 12 18 18 Si 1.86798 * 119.99809 * 184.99824 * 16 14 12 19 19 H 1.48494 * 109.47208 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46806 * 120.00081 * 18 16 14 21 21 H 1.48503 * 109.47382 * 239.99801 * 18 16 14 22 22 C 1.50699 * 109.47257 * 151.31032 * 12 10 3 23 23 C 1.38234 * 120.00112 * 321.54977 * 22 12 10 24 24 C 1.38238 * 119.99564 * 179.81023 * 23 22 12 25 25 C 1.38233 * 120.00309 * 0.39224 * 24 23 22 26 26 C 1.38231 * 119.99621 * 359.85698 * 25 24 23 27 27 C 1.38233 * 119.99639 * 141.81728 * 22 12 10 28 28 H 1.08992 * 109.46964 * 64.34091 * 1 2 3 29 29 H 1.09003 * 109.46670 * 184.34147 * 1 2 3 30 30 H 1.08995 * 109.46989 * 304.33843 * 1 2 3 31 31 H 1.09001 * 109.47210 * 239.99804 * 2 1 3 32 32 H 1.09002 * 109.47011 * 120.00147 * 2 1 3 33 33 H 1.08999 * 109.47205 * 30.00137 * 4 3 2 34 34 H 1.09005 * 109.46742 * 150.00303 * 4 3 2 35 35 H 1.08999 * 109.47227 * 300.00208 * 5 4 3 36 36 H 1.08997 * 109.46720 * 60.00365 * 5 4 3 37 37 H 1.09000 * 109.47002 * 300.00155 * 9 8 6 38 38 H 1.08996 * 109.47338 * 59.99774 * 9 8 6 39 39 H 1.09002 * 109.46737 * 180.02562 * 9 8 6 40 40 H 0.97004 * 119.99478 * 179.97438 * 17 16 14 41 41 H 1.08002 * 120.00035 * 359.97438 * 23 22 12 42 42 H 1.08010 * 119.99428 * 180.22818 * 24 23 22 43 43 H 1.08002 * 119.99657 * 179.84042 * 25 24 23 44 44 H 1.08006 * 119.99434 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00492 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3034 2.0573 -1.2680 5 6 3.7619 1.8122 -1.6602 6 6 4.0552 2.5082 -2.9642 7 8 3.1871 3.1363 -3.5224 8 8 5.2814 2.4312 -3.5050 9 6 5.4922 3.1267 -4.7621 10 6 2.2054 2.0298 1.1665 11 8 2.5274 3.1991 1.1653 12 6 2.0144 1.3022 2.4723 13 1 2.2784 0.2523 2.3451 14 6 0.5737 1.4096 2.9012 15 1 -0.0328 0.5199 2.9838 16 6 0.0316 2.6432 3.1936 17 7 0.7406 3.7346 3.0042 18 14 -1.7098 2.7642 3.8585 19 1 -2.2889 1.4022 3.9803 20 1 -1.6855 3.4125 5.1944 21 1 -2.5390 3.5741 2.9303 22 6 2.8993 1.9186 3.5250 23 6 4.1719 2.3455 3.1947 24 6 4.9821 2.9145 4.1595 25 6 4.5226 3.0493 5.4563 26 6 3.2518 2.6177 5.7876 27 6 2.4403 2.0521 4.8220 28 1 -0.3633 0.4450 -0.9263 29 1 -0.3633 -1.0248 0.0778 30 1 -0.3633 0.5797 0.8485 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6474 1.6645 -2.0448 34 1 2.1325 3.1280 -1.1553 35 1 4.4180 2.2051 -0.8834 36 1 3.9327 0.7416 -1.7729 37 1 4.8138 2.7277 -5.5162 38 1 5.2985 4.1906 -4.6256 39 1 6.5223 2.9834 -5.0882 40 1 0.3590 4.6024 3.2095 41 1 4.5322 2.2368 2.1824 42 1 5.9751 3.2514 3.9006 43 1 5.1566 3.4915 6.2106 44 1 2.8930 2.7226 6.8009 45 1 1.4474 1.7151 5.0809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433192651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:00 Heat of formation + Delta-G solvation = -104.551636 kcal Electronic energy + Delta-G solvation = -27895.570272 eV Core-core repulsion = 24070.972279 eV Total energy + Delta-G solvation = -3824.597992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.59563 -40.82407 -39.27709 -37.66517 -36.59166 -35.45571 -33.44715 -32.44373 -31.34020 -30.55996 -29.21569 -28.42912 -26.15699 -24.78362 -24.00097 -22.93794 -22.17574 -21.57962 -19.72016 -18.79965 -18.37895 -17.84822 -17.63150 -17.41346 -17.20914 -16.59347 -16.37507 -15.68969 -15.39253 -15.20864 -14.92187 -14.56722 -14.44228 -14.20120 -13.99813 -13.93571 -13.85979 -13.63270 -13.29972 -13.10841 -12.93620 -12.82800 -12.81221 -12.55013 -12.40842 -12.18860 -12.05654 -11.83067 -11.81012 -11.68789 -11.63841 -11.26872 -11.10119 -10.57264 -9.97612 -9.39645 -9.30160 -9.02425 -7.93831 -6.14765 0.90275 0.96434 1.11337 1.38970 1.45366 1.52085 1.64410 2.34385 2.48892 2.65121 3.28515 3.35786 3.73469 3.93031 4.08332 4.28591 4.30500 4.31885 4.34577 4.37574 4.46082 4.49741 4.52796 4.62071 4.69117 4.73880 4.75964 4.87347 4.98485 5.02321 5.07011 5.16589 5.18311 5.27573 5.32996 5.50903 5.57094 5.70611 5.76707 5.91403 5.97849 6.03626 6.05576 6.45004 6.55880 6.66978 6.74303 7.03118 7.50328 8.00025 8.99152 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.004650 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.093774 B = 6020.552900 C = 7351.957329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 N -0.627 5.627 4 C 0.137 3.863 5 C -0.117 4.117 6 C 0.472 3.528 7 O -0.540 6.540 8 O -0.363 6.363 9 C 0.027 3.973 10 C 0.528 3.472 11 O -0.552 6.552 12 C 0.056 3.944 13 H 0.072 0.928 14 C -0.524 4.524 15 H 0.073 0.927 16 C 0.037 3.963 17 N -0.851 5.851 18 Si 0.925 3.075 19 H -0.255 1.255 20 H -0.286 1.286 21 H -0.298 1.298 22 C -0.021 4.021 23 C -0.128 4.128 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.094 4.094 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.134 0.866 40 H 0.248 0.752 41 H 0.097 0.903 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -8.641 -7.905 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.009 4.009 3 N -0.362 5.362 4 C 0.013 3.987 5 C -0.156 4.156 6 C 0.316 3.684 7 O -0.430 6.430 8 O -0.279 6.279 9 C -0.066 4.066 10 C 0.319 3.681 11 O -0.428 6.428 12 C 0.035 3.965 13 H 0.090 0.910 14 C -0.561 4.561 15 H 0.091 0.909 16 C -0.169 4.169 17 N -0.485 5.485 18 Si 0.752 3.248 19 H -0.179 1.179 20 H -0.212 1.212 21 H -0.225 1.225 22 C -0.022 4.022 23 C -0.146 4.146 24 C -0.158 4.158 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.112 4.112 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.158 0.842 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.058 0.942 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.153 0.847 44 H 0.143 0.857 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.295 -7.600 -8.073 13.847 hybrid contribution -1.457 1.072 0.037 1.810 sum 6.838 -6.528 -8.036 12.408 Atomic orbital electron populations 1.22283 0.96720 1.02603 1.01816 1.21628 0.94337 0.81196 1.03701 1.48150 1.68075 1.15372 1.04606 1.20824 0.93754 0.97808 0.86363 1.21733 0.99102 1.03718 0.91026 1.23895 0.80008 0.77690 0.86826 1.90661 1.47854 1.41083 1.63411 1.86511 1.32746 1.69089 1.39573 1.23560 1.04799 0.96473 0.81758 1.21536 0.73724 0.87065 0.85822 1.90593 1.47330 1.17614 1.87259 1.18030 0.95605 0.94834 0.87998 0.91028 1.20791 0.94829 0.93043 1.47481 0.90938 1.25590 0.99542 0.96095 0.95633 1.70420 1.36583 0.97403 1.44062 0.86008 0.82390 0.78591 0.77790 1.17882 1.21219 1.22506 1.19914 0.92313 0.95179 0.94769 1.20948 0.94891 1.00660 0.98121 1.21163 1.00064 1.00859 0.93707 1.21139 0.96433 1.02177 0.96682 1.21296 0.95089 1.00689 0.99431 1.21049 0.98584 0.98422 0.93183 0.93878 0.90136 0.92827 0.88225 0.89887 0.89410 0.93782 0.88274 0.84247 0.91551 0.92598 0.84769 0.94241 0.88483 0.85357 0.84668 0.85746 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.21 10.22 71.98 0.74 -4.48 16 2 C 0.11 3.16 5.97 86.38 0.52 3.67 16 3 N -0.63 -22.71 2.47 -821.77 -2.03 -24.74 16 4 C 0.14 4.61 4.72 86.38 0.41 5.02 16 5 C -0.12 -3.13 6.14 29.85 0.18 -2.94 16 6 C 0.47 13.33 7.96 71.23 0.57 13.89 16 7 O -0.54 -18.55 15.73 21.98 0.35 -18.21 16 8 O -0.36 -8.63 10.57 -51.47 -0.54 -9.18 16 9 C 0.03 0.47 10.56 113.37 1.20 1.66 16 10 C 0.53 24.19 5.42 87.66 0.47 24.66 16 11 O -0.55 -30.19 13.01 -3.05 -0.04 -30.22 16 12 C 0.06 2.55 2.15 -13.03 -0.03 2.52 16 13 H 0.07 2.86 6.02 -2.39 -0.01 2.84 16 14 C -0.52 -25.19 5.46 25.60 0.14 -25.05 16 15 H 0.07 3.34 7.52 -2.91 -0.02 3.32 16 16 C 0.04 1.93 4.02 84.65 0.34 2.27 16 17 N -0.85 -48.70 9.94 21.45 0.21 -48.49 16 18 Si 0.93 41.85 29.54 68.60 2.03 43.87 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 22 C -0.02 -0.96 4.20 -19.87 -0.08 -1.05 16 23 C -0.13 -5.59 8.43 22.27 0.19 -5.40 16 24 C -0.14 -5.38 10.05 22.27 0.22 -5.16 16 25 C -0.15 -5.35 10.05 22.27 0.22 -5.13 16 26 C -0.15 -5.84 10.05 22.27 0.22 -5.62 16 27 C -0.09 -4.29 8.16 22.27 0.18 -4.11 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 2.03 5.71 -2.39 -0.01 2.02 16 31 H 0.10 1.97 8.06 -2.39 -0.02 1.95 16 32 H 0.08 2.28 5.82 -2.39 -0.01 2.26 16 33 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 34 H 0.04 1.88 7.32 -2.38 -0.02 1.86 16 35 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 38 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 39 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.10 4.18 7.09 -2.91 -0.02 4.16 16 42 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 43 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 44 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 45 H 0.11 5.20 6.37 -2.91 -0.02 5.18 16 Total: -1.00 -70.29 367.51 6.44 -63.85 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.99 Total: 28.35 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.49 Total: -5.24 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -1.82 Total: -73.23 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -0.24 Total: -57.61 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -70.29 6.44 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433192651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.702 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds