Wall clock time and date at job start Sat Apr 11 2020 00:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46933 * 2 1 4 4 C 1.50698 * 109.46928 * 119.99979 * 2 1 3 5 5 O 1.20825 * 120.00115 * 96.77341 * 4 2 1 6 6 O 1.34227 * 120.00103 * 277.04676 * 4 2 1 7 7 N 1.46904 * 109.46755 * 239.99681 * 2 1 3 8 8 C 1.46900 * 110.99758 * 85.29672 * 7 2 1 9 9 C 1.50697 * 109.47207 * 73.29921 * 8 7 2 10 10 C 1.38298 * 119.93237 * 264.02705 * 9 8 7 11 11 C 1.38102 * 120.07160 * 179.72196 * 10 9 8 12 12 C 1.38880 * 119.92765 * 0.57461 * 11 10 9 13 13 O 1.35755 * 120.06918 * 179.67677 * 12 11 10 14 14 C 1.34832 * 116.99953 * 185.29111 * 13 12 11 15 15 H 1.08003 * 119.99928 * 5.77060 * 14 13 12 16 16 C 1.38647 * 119.99978 * 185.77231 * 14 13 12 17 17 N 1.31562 * 120.00054 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00235 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47055 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47516 * 119.99589 * 18 16 14 21 21 H 1.48498 * 109.47305 * 239.99935 * 18 16 14 22 22 C 1.38884 * 119.86281 * 359.70483 * 12 11 10 23 23 C 1.38099 * 119.92708 * 359.97438 * 22 12 11 24 24 C 1.46892 * 111.00321 * 321.33814 * 7 2 1 25 25 C 1.53779 * 113.62082 * 277.50112 * 24 7 2 26 26 C 1.53781 * 87.08295 * 220.01804 * 25 24 7 27 27 C 1.53783 * 87.08251 * 25.43031 * 26 25 24 28 28 H 1.08999 * 109.47161 * 299.99763 * 1 2 3 29 29 H 1.08999 * 109.47312 * 60.00189 * 1 2 3 30 30 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 31 31 H 0.96699 * 117.00193 * 179.73177 * 6 4 2 32 32 H 1.08999 * 109.47090 * 193.30036 * 8 7 2 33 33 H 1.08994 * 109.47057 * 313.29869 * 8 7 2 34 34 H 1.08003 * 119.96519 * 359.97438 * 10 9 8 35 35 H 1.07993 * 120.03806 * 180.26968 * 11 10 9 36 36 H 0.96997 * 120.00551 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.03637 * 179.97438 * 22 12 11 38 38 H 1.08004 * 119.95966 * 180.02562 * 23 22 12 39 39 H 1.09007 * 112.84851 * 48.80389 * 24 7 2 40 40 H 1.09011 * 113.61014 * 334.56369 * 25 24 7 41 41 H 1.09000 * 113.61714 * 105.46355 * 25 24 7 42 42 H 1.08996 * 113.61234 * 270.88068 * 26 25 24 43 43 H 1.09002 * 113.61237 * 139.97348 * 26 25 24 44 44 H 1.08997 * 113.61450 * 220.02319 * 27 26 25 45 45 H 1.09000 * 113.69383 * 89.12342 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3500 -1.8745 1.1686 6 8 2.1215 -0.0515 2.3965 7 7 2.0196 -0.6926 -1.1995 8 6 2.0890 0.2242 -2.3452 9 6 3.2531 1.1643 -2.1665 10 6 3.0496 2.4187 -1.6208 11 6 4.1153 3.2804 -1.4504 12 6 5.3904 2.8907 -1.8388 13 8 6.4390 3.7379 -1.6787 14 6 7.6279 3.3413 -2.1758 15 1 7.6948 2.4321 -2.7549 16 6 8.7645 4.1005 -1.9434 17 7 8.6829 5.2082 -1.2383 18 14 10.4115 3.5515 -2.6327 19 1 10.2355 2.2827 -3.3840 20 1 10.9404 4.5978 -3.5442 21 1 11.3682 3.3370 -1.5174 22 6 5.5906 1.6325 -2.3918 23 6 4.5219 0.7729 -2.5534 24 6 1.1855 -1.8612 -1.5100 25 6 1.5526 -3.1138 -0.6970 26 6 1.3211 -3.9215 -1.9850 27 6 1.6458 -2.6325 -2.7582 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.4455 -0.5502 3.1589 32 1 2.2229 -0.3497 -3.2621 33 1 1.1646 0.7983 -2.4076 34 1 2.0569 2.7232 -1.3238 35 1 3.9565 4.2581 -1.0203 36 1 9.4781 5.7393 -1.0754 37 1 6.5810 1.3267 -2.6952 38 1 4.6770 -0.2057 -2.9830 39 1 0.1195 -1.6334 -1.5059 40 1 2.5876 -3.1245 -0.3550 41 1 0.8413 -3.3435 0.0963 42 1 0.2920 -4.2582 -2.1101 43 1 2.0497 -4.7177 -2.1380 44 1 1.0097 -2.4736 -3.6289 45 1 2.7059 -2.5103 -2.9806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603198097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:26 Heat of formation + Delta-G solvation = -53.351457 kcal Electronic energy + Delta-G solvation = -27328.871289 eV Core-core repulsion = 23506.493503 eV Total energy + Delta-G solvation = -3822.377786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74423 -39.25062 -38.78682 -36.87119 -36.00120 -35.38205 -32.38393 -31.40908 -30.14293 -28.98615 -25.99490 -25.76669 -25.45549 -24.64244 -22.98902 -21.99138 -20.86846 -20.23561 -18.87758 -18.11915 -17.88042 -17.05085 -16.90129 -16.01243 -15.63192 -15.35845 -15.08048 -14.63099 -14.44486 -14.22952 -13.69744 -13.52366 -13.46909 -13.43866 -12.87934 -12.82900 -12.64334 -12.43221 -12.22159 -11.99053 -11.73136 -11.58368 -11.43830 -11.30121 -11.22704 -11.06151 -10.80843 -10.77233 -10.53621 -10.41799 -10.30075 -10.16343 -9.87897 -9.34476 -8.83085 -8.32876 -8.15676 -7.17866 -6.45171 -4.03693 2.18259 2.26177 2.34306 2.97276 3.12942 3.14498 3.19921 3.97090 3.99058 4.49205 4.65610 4.68202 4.79081 4.83113 4.97263 5.00902 5.08643 5.14303 5.22649 5.29833 5.35045 5.43867 5.48822 5.55240 5.67289 5.73393 5.79783 5.82920 5.86554 5.88734 5.94610 6.12617 6.22166 6.30720 6.42445 6.44916 6.69329 6.70220 6.89641 6.94858 7.05409 7.16995 7.27309 7.42280 7.45398 7.83422 8.00242 8.03208 9.00846 9.71042 10.72948 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.003176 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.682451 B = 8815.215236 C = 9225.663924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.120 0.880 4 C 0.486 3.514 5 O -0.496 6.496 6 O -0.520 6.520 7 N -0.506 5.506 8 C 0.114 3.886 9 C -0.183 4.183 10 C -0.072 4.072 11 C -0.193 4.193 12 C 0.156 3.844 13 O -0.178 6.178 14 C -0.390 4.390 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.862 5.862 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.234 4.234 23 C -0.046 4.046 24 C 0.043 3.957 25 C -0.099 4.099 26 C -0.154 4.154 27 C -0.129 4.129 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.269 0.731 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.629 -12.949 0.975 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.022 4.022 3 H 0.138 0.862 4 C 0.327 3.673 5 O -0.383 6.383 6 O -0.331 6.331 7 N -0.230 5.230 8 C -0.012 4.012 9 C -0.184 4.184 10 C -0.091 4.091 11 C -0.212 4.212 12 C 0.102 3.898 13 O -0.081 6.081 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.254 4.254 23 C -0.065 4.065 24 C -0.065 4.065 25 C -0.137 4.137 26 C -0.192 4.192 27 C -0.166 4.166 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.265 0.735 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.022 -12.810 0.886 20.532 hybrid contribution 0.347 -0.269 0.089 0.448 sum -15.675 -13.079 0.975 20.438 Atomic orbital electron populations 1.22359 0.94425 1.03225 1.03712 1.21146 0.94135 0.99537 0.87353 0.86209 1.23400 0.74220 0.85628 0.84088 1.90694 1.45086 1.17613 1.84872 1.84538 1.79636 1.48581 1.20389 1.62077 1.50665 1.07585 1.02711 1.20834 0.95430 0.92589 0.92364 1.19081 0.94408 0.95266 1.09686 1.20481 0.97063 0.93291 0.98240 1.20151 0.90509 1.01137 1.09407 1.19415 0.88913 0.89138 0.92341 1.83992 1.15722 1.39921 1.68499 1.21372 0.82705 1.10380 1.32197 0.89033 1.25290 0.99001 0.95535 0.96704 1.70047 1.29987 1.13185 1.36522 0.85655 0.80432 0.78789 0.78617 1.19073 1.20136 1.20144 1.21178 0.99756 0.95239 1.09190 1.20537 0.91712 0.97478 0.96741 1.23431 0.95208 0.89908 0.97954 1.22992 1.03833 0.92618 0.94266 1.22870 1.00996 0.96793 0.98554 1.22966 1.02213 0.95701 0.95745 0.91014 0.90799 0.91225 0.73478 0.89995 0.94436 0.87461 0.86608 0.92076 0.85642 0.87563 0.91218 0.87614 0.92803 0.90969 0.91479 0.91986 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 8.07 37.16 0.30 -1.32 16 2 C 0.09 1.07 2.64 -68.86 -0.18 0.88 16 3 H 0.12 1.57 5.66 -51.93 -0.29 1.27 16 4 C 0.49 6.33 7.53 36.00 0.27 6.60 16 5 O -0.50 -7.30 12.47 -18.75 -0.23 -7.53 16 6 O -0.52 -5.76 13.42 -39.25 -0.53 -6.28 16 7 N -0.51 -6.42 4.14 -220.56 -0.91 -7.33 16 8 C 0.11 1.45 4.94 -4.98 -0.02 1.43 16 9 C -0.18 -2.99 5.02 -104.58 -0.53 -3.52 16 10 C -0.07 -1.22 8.26 -39.61 -0.33 -1.55 16 11 C -0.19 -3.99 9.99 -39.39 -0.39 -4.38 16 12 C 0.16 3.75 6.65 -39.10 -0.26 3.49 16 13 O -0.18 -5.09 9.76 0.03 0.00 -5.09 16 14 C -0.39 -10.93 9.44 30.88 0.29 -10.64 16 15 H 0.09 2.39 5.29 -52.48 -0.28 2.11 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 18 Si 0.94 20.61 29.55 -169.99 -5.02 15.58 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.23 -5.10 9.14 -39.39 -0.36 -5.46 16 23 C -0.05 -0.84 9.71 -39.61 -0.38 -1.23 16 24 C 0.04 0.47 2.42 -66.90 -0.16 0.31 16 25 C -0.10 -1.16 5.35 -25.92 -0.14 -1.30 16 26 C -0.15 -1.49 8.08 -25.92 -0.21 -1.70 16 27 C -0.13 -1.30 6.31 -25.91 -0.16 -1.47 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.60 7.37 -51.93 -0.38 0.22 16 30 H 0.07 0.62 6.19 -51.93 -0.32 0.30 16 31 H 0.41 2.81 9.10 45.56 0.41 3.22 16 32 H 0.08 0.99 6.56 -51.93 -0.34 0.65 16 33 H 0.04 0.43 7.12 -51.93 -0.37 0.06 16 34 H 0.11 1.49 7.72 -52.48 -0.41 1.08 16 35 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 38 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 39 H 0.07 0.69 5.77 -51.93 -0.30 0.39 16 40 H 0.11 1.53 6.52 -51.92 -0.34 1.19 16 41 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.02 8.01 -51.93 -0.42 0.60 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -32.05 359.27 -8.30 -40.35 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.41 Total: 8.35 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.36 Total: -18.90 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: -0.15 Total: -31.90 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.76 Total: -18.90 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.05 -8.30 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603198097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.001 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds