Wall clock time and date at job start Sat Apr 11 2020 00:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46933 * 2 1 4 4 C 1.50698 * 109.46928 * 119.99979 * 2 1 3 5 5 O 1.20825 * 120.00115 * 96.77341 * 4 2 1 6 6 O 1.34227 * 120.00103 * 277.04676 * 4 2 1 7 7 N 1.46904 * 109.46755 * 239.99681 * 2 1 3 8 8 C 1.46900 * 110.99758 * 85.29672 * 7 2 1 9 9 C 1.50697 * 109.47207 * 73.29921 * 8 7 2 10 10 C 1.38298 * 119.93237 * 264.02705 * 9 8 7 11 11 C 1.38102 * 120.07160 * 179.72196 * 10 9 8 12 12 C 1.38880 * 119.92765 * 0.57461 * 11 10 9 13 13 O 1.35755 * 120.06918 * 179.67677 * 12 11 10 14 14 C 1.34832 * 116.99953 * 185.29111 * 13 12 11 15 15 H 1.08003 * 119.99928 * 5.77060 * 14 13 12 16 16 C 1.38647 * 119.99978 * 185.77231 * 14 13 12 17 17 N 1.31562 * 120.00054 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00235 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47055 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47516 * 119.99589 * 18 16 14 21 21 H 1.48498 * 109.47305 * 239.99935 * 18 16 14 22 22 C 1.38884 * 119.86281 * 359.70483 * 12 11 10 23 23 C 1.38099 * 119.92708 * 359.97438 * 22 12 11 24 24 C 1.46892 * 111.00321 * 321.33814 * 7 2 1 25 25 C 1.53779 * 113.62082 * 277.50112 * 24 7 2 26 26 C 1.53781 * 87.08295 * 220.01804 * 25 24 7 27 27 C 1.53783 * 87.08251 * 25.43031 * 26 25 24 28 28 H 1.08999 * 109.47161 * 299.99763 * 1 2 3 29 29 H 1.08999 * 109.47312 * 60.00189 * 1 2 3 30 30 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 31 31 H 0.96699 * 117.00193 * 179.73177 * 6 4 2 32 32 H 1.08999 * 109.47090 * 193.30036 * 8 7 2 33 33 H 1.08994 * 109.47057 * 313.29869 * 8 7 2 34 34 H 1.08003 * 119.96519 * 359.97438 * 10 9 8 35 35 H 1.07993 * 120.03806 * 180.26968 * 11 10 9 36 36 H 0.96997 * 120.00551 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.03637 * 179.97438 * 22 12 11 38 38 H 1.08004 * 119.95966 * 180.02562 * 23 22 12 39 39 H 1.09007 * 112.84851 * 48.80389 * 24 7 2 40 40 H 1.09011 * 113.61014 * 334.56369 * 25 24 7 41 41 H 1.09000 * 113.61714 * 105.46355 * 25 24 7 42 42 H 1.08996 * 113.61234 * 270.88068 * 26 25 24 43 43 H 1.09002 * 113.61237 * 139.97348 * 26 25 24 44 44 H 1.08997 * 113.61450 * 220.02319 * 27 26 25 45 45 H 1.09000 * 113.69383 * 89.12342 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3500 -1.8745 1.1686 6 8 2.1215 -0.0515 2.3965 7 7 2.0196 -0.6926 -1.1995 8 6 2.0890 0.2242 -2.3452 9 6 3.2531 1.1643 -2.1665 10 6 3.0496 2.4187 -1.6208 11 6 4.1153 3.2804 -1.4504 12 6 5.3904 2.8907 -1.8388 13 8 6.4390 3.7379 -1.6787 14 6 7.6279 3.3413 -2.1758 15 1 7.6948 2.4321 -2.7549 16 6 8.7645 4.1005 -1.9434 17 7 8.6829 5.2082 -1.2383 18 14 10.4115 3.5515 -2.6327 19 1 10.2355 2.2827 -3.3840 20 1 10.9404 4.5978 -3.5442 21 1 11.3682 3.3370 -1.5174 22 6 5.5906 1.6325 -2.3918 23 6 4.5219 0.7729 -2.5534 24 6 1.1855 -1.8612 -1.5100 25 6 1.5526 -3.1138 -0.6970 26 6 1.3211 -3.9215 -1.9850 27 6 1.6458 -2.6325 -2.7582 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.4455 -0.5502 3.1589 32 1 2.2229 -0.3497 -3.2621 33 1 1.1646 0.7983 -2.4076 34 1 2.0569 2.7232 -1.3238 35 1 3.9565 4.2581 -1.0203 36 1 9.4781 5.7393 -1.0754 37 1 6.5810 1.3267 -2.6952 38 1 4.6770 -0.2057 -2.9830 39 1 0.1195 -1.6334 -1.5059 40 1 2.5876 -3.1245 -0.3550 41 1 0.8413 -3.3435 0.0963 42 1 0.2920 -4.2582 -2.1101 43 1 2.0497 -4.7177 -2.1380 44 1 1.0097 -2.4736 -3.6289 45 1 2.7059 -2.5103 -2.9806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603198097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:25 Heat of formation + Delta-G solvation = -74.538133 kcal Electronic energy + Delta-G solvation = -27329.790013 eV Core-core repulsion = 23506.493503 eV Total energy + Delta-G solvation = -3823.296509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71005 -40.73209 -39.92816 -38.39946 -36.95555 -36.48004 -34.32127 -32.60630 -31.72900 -30.24823 -27.56933 -26.68108 -26.55881 -25.84421 -24.02083 -23.59952 -22.14529 -21.36991 -19.86031 -19.76748 -18.94491 -18.78406 -17.97816 -16.86512 -16.63356 -16.43227 -16.37922 -16.22007 -16.03657 -15.48439 -15.39183 -14.97770 -14.64364 -14.36170 -14.30909 -14.09318 -13.74083 -13.57184 -13.38291 -13.04664 -13.03556 -12.82304 -12.70103 -12.46228 -12.35398 -12.27792 -12.19196 -12.11380 -12.05351 -11.71127 -11.19017 -11.17006 -11.06746 -10.80503 -10.78506 -9.73547 -9.24948 -8.88135 -8.47407 -6.15017 0.62626 0.69507 1.32893 1.34393 1.42446 1.52449 2.09241 2.17424 2.79081 3.05861 3.29938 3.53237 3.70319 3.86564 3.98970 4.02022 4.07946 4.10598 4.15956 4.21905 4.24941 4.36614 4.49400 4.58808 4.62571 4.69039 4.76634 4.84575 4.88192 4.94416 5.07514 5.09593 5.12472 5.15100 5.16609 5.26994 5.33008 5.48067 5.55436 5.61903 5.74296 5.81008 5.82517 6.03447 6.06765 6.23178 6.31319 6.97885 7.13729 7.79462 8.76173 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.003176 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.682451 B = 8815.215236 C = 9225.663924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.084 3.916 3 H 0.111 0.889 4 C 0.479 3.521 5 O -0.520 6.520 6 O -0.522 6.522 7 N -0.525 5.525 8 C 0.117 3.883 9 C -0.154 4.154 10 C -0.060 4.060 11 C -0.203 4.203 12 C 0.113 3.887 13 O -0.233 6.233 14 C -0.411 4.411 15 H 0.098 0.902 16 C -0.023 4.023 17 N -0.920 5.920 18 Si 1.017 2.983 19 H -0.253 1.253 20 H -0.266 1.266 21 H -0.269 1.269 22 C -0.246 4.246 23 C -0.049 4.049 24 C 0.048 3.952 25 C -0.102 4.102 26 C -0.146 4.146 27 C -0.126 4.126 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.423 0.577 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.272 0.728 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.504 -14.991 -0.185 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 H 0.128 0.872 4 C 0.321 3.679 5 O -0.408 6.408 6 O -0.335 6.335 7 N -0.250 5.250 8 C -0.009 4.009 9 C -0.155 4.155 10 C -0.078 4.078 11 C -0.222 4.222 12 C 0.063 3.937 13 O -0.140 6.140 14 C -0.488 4.488 15 H 0.116 0.884 16 C -0.220 4.220 17 N -0.559 5.559 18 Si 0.836 3.164 19 H -0.177 1.177 20 H -0.191 1.191 21 H -0.194 1.194 22 C -0.265 4.265 23 C -0.068 4.068 24 C -0.060 4.060 25 C -0.140 4.140 26 C -0.184 4.184 27 C -0.164 4.164 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.284 0.716 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.169 0.831 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.148 0.852 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.952 -14.888 -0.265 24.102 hybrid contribution 0.901 0.169 0.530 1.059 sum -18.051 -14.720 0.265 23.293 Atomic orbital electron populations 1.22328 0.91796 1.03793 1.05035 1.21243 0.96204 0.98471 0.86655 0.87156 1.23769 0.73754 0.85499 0.84840 1.90710 1.46138 1.18600 1.85352 1.84505 1.79432 1.48801 1.20760 1.61918 1.52196 1.08082 1.02768 1.20851 0.94576 0.92407 0.93063 1.19622 0.94985 0.95401 1.05479 1.20926 0.97788 0.92606 0.96492 1.20445 0.90392 1.01997 1.09393 1.19972 0.89215 0.90103 0.94397 1.83947 1.16746 1.42177 1.71142 1.21810 0.83340 1.10812 1.32793 0.88422 1.26553 1.02992 0.95445 0.97001 1.70184 1.31299 1.15108 1.39277 0.84554 0.74811 0.78887 0.78118 1.17665 1.19135 1.19388 1.21240 1.00459 0.95240 1.09541 1.20849 0.91615 0.97823 0.96504 1.23499 0.95969 0.88636 0.97855 1.22850 1.01774 0.94312 0.95083 1.22861 1.02069 0.96566 0.96868 1.22939 1.01737 0.95525 0.96190 0.90159 0.89047 0.90988 0.71633 0.88557 0.91535 0.83113 0.86832 0.91850 0.87004 0.85195 0.89125 0.90831 0.93276 0.89079 0.91675 0.89951 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 8.07 71.98 0.58 -1.79 16 2 C 0.08 1.76 2.64 44.17 0.12 1.88 16 3 H 0.11 2.50 5.66 -2.39 -0.01 2.49 16 4 C 0.48 11.69 7.53 71.24 0.54 12.22 16 5 O -0.52 -14.85 12.47 21.97 0.27 -14.58 16 6 O -0.52 -10.78 13.42 -51.39 -0.69 -11.47 16 7 N -0.52 -11.49 4.14 -851.73 -3.52 -15.01 16 8 C 0.12 2.44 4.94 85.56 0.42 2.86 16 9 C -0.15 -4.55 5.02 -19.84 -0.10 -4.65 16 10 C -0.06 -1.87 8.26 22.25 0.18 -1.69 16 11 C -0.20 -8.46 9.99 22.39 0.22 -8.24 16 12 C 0.11 5.69 6.65 22.58 0.15 5.84 16 13 O -0.23 -14.24 9.76 -22.82 -0.22 -14.46 16 14 C -0.41 -24.40 9.44 67.92 0.64 -23.76 16 15 H 0.10 5.38 5.29 -2.91 -0.02 5.37 16 16 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 17 N -0.92 -57.07 13.67 21.61 0.30 -56.77 16 18 Si 1.02 43.64 29.55 68.60 2.03 45.67 16 19 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 22 C -0.25 -10.95 9.14 22.39 0.20 -10.75 16 23 C -0.05 -1.73 9.71 22.25 0.22 -1.52 16 24 C 0.05 0.86 2.42 45.44 0.11 0.97 16 25 C -0.10 -2.19 5.35 31.12 0.17 -2.03 16 26 C -0.15 -2.40 8.08 31.12 0.25 -2.15 16 27 C -0.13 -2.09 6.31 31.12 0.20 -1.90 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.09 0.97 7.37 -2.39 -0.02 0.95 16 30 H 0.07 0.99 6.19 -2.39 -0.01 0.97 16 31 H 0.42 5.38 9.10 -74.06 -0.67 4.70 16 32 H 0.10 1.82 6.56 -2.39 -0.02 1.81 16 33 H 0.07 1.08 7.12 -2.39 -0.02 1.06 16 34 H 0.15 3.44 7.72 -2.91 -0.02 3.42 16 35 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 37 H 0.11 5.19 5.71 -2.91 -0.02 5.17 16 38 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 39 H 0.09 1.32 5.77 -2.38 -0.01 1.31 16 40 H 0.07 2.09 6.52 -2.38 -0.02 2.07 16 41 H 0.05 1.07 7.87 -2.39 -0.02 1.05 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.49 8.01 -2.39 -0.02 1.47 16 Total: -1.00 -75.68 359.27 2.88 -72.80 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.35 Total: 29.34 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 4.37 Total: -35.52 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -3.23 Total: -71.79 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.64 Total: -40.51 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.68 2.88 -72.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603198097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.739 kcal (2) G-P(sol) polarization free energy of solvation -75.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds