Wall clock time and date at job start Sat Apr 11 2020 00:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 119.99622 * 2 1 4 4 H 1.48508 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46893 * 299.99721 * 3 2 1 6 6 H 1.48492 * 109.47132 * 60.00315 * 3 2 1 7 7 C 1.38799 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99888 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00208 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47356 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47370 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47191 * 180.02562 * 12 11 10 14 14 C 1.46897 * 110.99690 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.47442 * 35.00339 * 14 13 12 16 16 C 1.53004 * 109.47029 * 155.00078 * 14 13 12 17 17 C 1.53004 * 109.47139 * 295.00195 * 16 14 13 18 18 C 1.53782 * 113.61306 * 272.49856 * 17 16 14 19 19 C 1.53784 * 87.08207 * 220.01875 * 18 17 16 20 20 C 1.53777 * 113.61603 * 174.99931 * 17 16 14 21 21 C 1.50696 * 109.47403 * 275.00050 * 14 13 12 22 22 C 1.38230 * 120.00309 * 140.00233 * 21 14 13 23 23 C 1.38235 * 120.00326 * 179.97438 * 22 21 14 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38240 * 120.00061 * 0.07178 * 24 23 22 26 26 C 1.38234 * 120.00081 * 359.88514 * 25 24 23 27 27 H 0.96996 * 120.00319 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46405 * 60.00209 * 10 9 7 29 29 H 1.08997 * 109.47280 * 300.00530 * 10 9 7 30 30 H 1.08999 * 109.46834 * 60.00128 * 11 10 9 31 31 H 1.09006 * 109.47102 * 300.00337 * 11 10 9 32 32 H 1.09000 * 109.46892 * 59.99710 * 12 11 10 33 33 H 1.08997 * 109.47077 * 300.00335 * 12 11 10 34 34 H 1.00899 * 110.99857 * 303.95405 * 13 12 11 35 35 H 1.09000 * 109.46993 * 54.99381 * 16 14 13 36 36 H 1.09001 * 109.47560 * 175.00381 * 16 14 13 37 37 H 1.08998 * 112.85083 * 43.79634 * 17 16 14 38 38 H 1.09008 * 113.61084 * 334.56275 * 18 17 16 39 39 H 1.09000 * 113.62035 * 105.46731 * 18 17 16 40 40 H 1.08997 * 113.60800 * 270.88666 * 19 18 17 41 41 H 1.08996 * 113.61546 * 139.97796 * 19 18 17 42 42 H 1.09000 * 113.61603 * 254.53039 * 20 17 16 43 43 H 1.09006 * 113.61446 * 25.34725 * 20 17 16 44 44 H 1.08000 * 120.00376 * 359.97438 * 22 21 14 45 45 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 46 46 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 47 47 H 1.08005 * 120.00107 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.00147 * 180.10835 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8914 -0.0005 11 6 1.9797 -5.3242 -0.0012 12 6 3.1517 -6.3076 -0.0005 13 7 2.6366 -7.6834 -0.0018 14 6 3.7364 -8.6572 -0.0018 15 1 4.5662 -8.2683 0.5884 16 6 3.2512 -9.9745 0.6066 17 6 2.9025 -9.7577 2.0805 18 6 4.1004 -9.9321 3.0290 19 6 3.1344 -10.6432 3.9913 20 6 2.2877 -10.9945 2.7566 21 6 4.1955 -8.8965 -1.4171 22 6 5.5436 -9.0258 -1.6939 23 6 5.9646 -9.2459 -2.9921 24 6 5.0374 -9.3373 -4.0133 25 6 3.6893 -9.2070 -3.7366 26 6 3.2682 -8.9878 -2.4383 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7312 0.8896 29 1 3.1247 -3.7312 -0.8904 30 1 1.3713 -5.4840 -0.8914 31 1 1.3707 -5.4846 0.8886 32 1 3.7597 -6.1477 0.8899 33 1 3.7610 -6.1473 -0.8900 34 1 2.0164 -7.8379 0.7789 35 1 2.3663 -10.3180 0.0708 36 1 4.0387 -10.7239 0.5261 37 1 2.3384 -8.8408 2.2516 38 1 4.8799 -10.5829 2.6328 39 1 4.4902 -8.9913 3.4178 40 1 2.6344 -9.9682 4.6859 41 1 3.5700 -11.5126 4.4838 42 1 1.2141 -10.9115 2.9253 43 1 2.5705 -11.9357 2.2850 44 1 6.2680 -8.9549 -0.8961 45 1 7.0182 -9.3425 -3.2091 46 1 5.3664 -9.5088 -5.0276 47 1 2.9649 -9.2780 -4.5345 48 1 2.2149 -8.8878 -2.2219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181360045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:07:16 Heat of formation + Delta-G solvation = 17.274603 kcal Electronic energy + Delta-G solvation = -23654.503994 eV Core-core repulsion = 20413.774750 eV Total energy + Delta-G solvation = -3240.729245 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.167 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.98153 -38.87295 -36.69793 -33.74665 -32.40859 -30.95640 -30.56221 -29.79879 -26.00425 -25.79685 -25.34665 -24.04690 -22.68731 -22.36674 -21.04779 -20.28413 -19.60009 -17.43134 -16.90043 -16.19654 -15.95476 -15.44121 -15.22078 -14.79724 -14.78904 -14.66088 -14.27827 -13.91311 -13.53045 -13.39020 -13.01823 -12.88825 -12.75915 -12.69869 -12.56890 -12.13712 -11.98219 -11.53084 -11.39513 -11.31255 -11.17202 -11.07394 -11.00650 -10.77404 -10.74543 -10.56139 -10.43214 -10.40024 -10.27638 -9.49676 -9.04628 -8.92985 -8.71504 -8.45617 -8.26806 -6.49881 -6.20853 -3.90551 1.31459 1.40737 3.22144 3.23699 3.31224 3.57839 3.74699 4.08155 4.24710 4.35882 4.36436 4.40853 4.60207 4.74520 4.87030 4.95864 5.04483 5.11215 5.13048 5.15185 5.25106 5.33659 5.38992 5.43501 5.45216 5.47821 5.53724 5.56962 5.59047 5.63867 5.67493 5.74749 5.79854 5.91068 5.95042 5.96178 6.03448 6.06155 6.16821 6.23965 6.36408 6.42730 6.51192 6.58700 6.64490 6.79375 6.98527 7.09618 7.39887 7.62971 8.39097 9.25614 10.87416 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.002701 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.964328 B =10365.310603 C =12137.481449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.133 6.133 10 C -0.112 4.112 11 C -0.094 4.094 12 C 0.065 3.935 13 N -0.682 5.682 14 C 0.128 3.872 15 H 0.051 0.949 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.073 4.073 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.084 4.084 27 H 0.266 0.734 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.343 0.657 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 -24.986 0.701 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.090 0.910 9 S 0.095 5.905 10 C -0.261 4.261 11 C -0.133 4.133 12 C -0.065 4.065 13 N -0.315 5.315 14 C 0.018 3.982 15 H 0.069 0.931 16 C -0.143 4.143 17 C -0.134 4.134 18 C -0.176 4.176 19 C -0.181 4.181 20 C -0.173 4.173 21 C -0.074 4.074 22 C -0.139 4.139 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.103 4.103 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.163 0.837 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.837 -25.075 0.037 26.271 hybrid contribution 2.279 1.517 0.832 2.861 sum 10.116 -23.558 0.869 25.653 Atomic orbital electron populations 1.70032 1.05904 1.27170 1.47456 1.25015 0.95077 0.99072 0.94672 0.86123 0.79671 0.81922 0.77873 1.19619 1.20563 1.20586 1.22735 0.94539 0.90825 1.58205 0.90971 1.84615 1.09625 0.99412 1.96830 1.23216 1.02782 0.97405 1.02678 1.21231 0.96965 0.92138 1.02957 1.22041 0.97129 0.87025 1.00297 1.60464 1.18163 1.02597 1.50260 1.20362 0.93273 0.92612 0.91965 0.93069 1.21739 1.01840 0.96317 0.94381 1.22630 0.97825 0.98971 0.93931 1.22996 0.96588 1.00755 0.97281 1.22810 0.98219 1.00518 0.96572 1.22915 0.99647 0.97985 0.96746 1.19839 0.92882 0.99292 0.95337 1.21004 0.95235 1.00925 0.96688 1.21042 0.99288 1.01079 0.92997 1.21122 0.93496 1.00828 0.98918 1.21219 0.95787 1.00469 0.96973 1.21066 1.00405 0.97034 0.91749 0.92390 0.92423 0.92182 0.90777 0.91937 0.95457 0.91184 0.83696 0.90656 0.91195 0.89148 0.90190 0.91665 0.90188 0.91674 0.91422 0.90192 0.86647 0.86498 0.86548 0.86305 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -15.00 9.50 30.94 0.29 -14.71 16 8 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 10 C -0.11 -2.31 5.67 37.16 0.21 -2.09 16 11 C -0.09 -1.56 5.48 -26.73 -0.15 -1.70 16 12 C 0.07 0.89 5.48 -3.83 -0.02 0.87 16 13 N -0.68 -7.76 5.55 -107.96 -0.60 -8.36 16 14 C 0.13 1.28 2.25 -68.87 -0.15 1.13 16 15 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 16 C -0.11 -0.87 4.62 -26.73 -0.12 -0.99 16 17 C -0.12 -0.90 3.48 -89.81 -0.31 -1.21 16 18 C -0.14 -1.05 7.63 -25.92 -0.20 -1.25 16 19 C -0.14 -1.02 8.08 -25.91 -0.21 -1.23 16 20 C -0.14 -0.97 7.64 -25.92 -0.20 -1.16 16 21 C -0.07 -0.80 4.71 -104.63 -0.49 -1.29 16 22 C -0.12 -1.25 9.67 -39.59 -0.38 -1.64 16 23 C -0.13 -1.26 10.05 -39.58 -0.40 -1.65 16 24 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 26 C -0.08 -0.96 9.32 -39.58 -0.37 -1.33 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 29 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 33 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 34 H 0.34 3.62 6.47 -39.29 -0.25 3.36 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 37 H 0.09 0.77 6.41 -51.93 -0.33 0.43 16 38 H 0.08 0.57 7.90 -51.92 -0.41 0.16 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.54 8.10 -51.93 -0.42 0.11 16 44 H 0.12 1.04 8.04 -52.49 -0.42 0.62 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 48 H 0.13 1.50 7.72 -52.49 -0.41 1.09 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -31.12 400.01 -13.06 -44.18 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.50 Total: 2.50 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -3.39 Total: -29.73 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.13 Total: -33.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.12 -13.06 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181360045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.450 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds