Wall clock time and date at job start Sat Apr 11 2020 00:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 119.99622 * 2 1 4 4 H 1.48508 * 109.46992 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46893 * 299.99721 * 3 2 1 6 6 H 1.48492 * 109.47132 * 60.00315 * 3 2 1 7 7 C 1.38799 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99888 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99979 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00208 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47356 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47370 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47191 * 180.02562 * 12 11 10 14 14 C 1.46897 * 110.99690 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.47442 * 35.00339 * 14 13 12 16 16 C 1.53004 * 109.47029 * 155.00078 * 14 13 12 17 17 C 1.53004 * 109.47139 * 295.00195 * 16 14 13 18 18 C 1.53782 * 113.61306 * 272.49856 * 17 16 14 19 19 C 1.53784 * 87.08207 * 220.01875 * 18 17 16 20 20 C 1.53777 * 113.61603 * 174.99931 * 17 16 14 21 21 C 1.50696 * 109.47403 * 275.00050 * 14 13 12 22 22 C 1.38230 * 120.00309 * 140.00233 * 21 14 13 23 23 C 1.38235 * 120.00326 * 179.97438 * 22 21 14 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38240 * 120.00061 * 0.07178 * 24 23 22 26 26 C 1.38234 * 120.00081 * 359.88514 * 25 24 23 27 27 H 0.96996 * 120.00319 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46405 * 60.00209 * 10 9 7 29 29 H 1.08997 * 109.47280 * 300.00530 * 10 9 7 30 30 H 1.08999 * 109.46834 * 60.00128 * 11 10 9 31 31 H 1.09006 * 109.47102 * 300.00337 * 11 10 9 32 32 H 1.09000 * 109.46892 * 59.99710 * 12 11 10 33 33 H 1.08997 * 109.47077 * 300.00335 * 12 11 10 34 34 H 1.00899 * 110.99857 * 303.95405 * 13 12 11 35 35 H 1.09000 * 109.46993 * 54.99381 * 16 14 13 36 36 H 1.09001 * 109.47560 * 175.00381 * 16 14 13 37 37 H 1.08998 * 112.85083 * 43.79634 * 17 16 14 38 38 H 1.09008 * 113.61084 * 334.56275 * 18 17 16 39 39 H 1.09000 * 113.62035 * 105.46731 * 18 17 16 40 40 H 1.08997 * 113.60800 * 270.88666 * 19 18 17 41 41 H 1.08996 * 113.61546 * 139.97796 * 19 18 17 42 42 H 1.09000 * 113.61603 * 254.53039 * 20 17 16 43 43 H 1.09006 * 113.61446 * 25.34725 * 20 17 16 44 44 H 1.08000 * 120.00376 * 359.97438 * 22 21 14 45 45 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 46 46 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 47 47 H 1.08005 * 120.00107 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.00147 * 180.10835 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1295 -2.7280 -0.0005 10 6 2.5161 -3.8914 -0.0005 11 6 1.9797 -5.3242 -0.0012 12 6 3.1517 -6.3076 -0.0005 13 7 2.6366 -7.6834 -0.0018 14 6 3.7364 -8.6572 -0.0018 15 1 4.5662 -8.2683 0.5884 16 6 3.2512 -9.9745 0.6066 17 6 2.9025 -9.7577 2.0805 18 6 4.1004 -9.9321 3.0290 19 6 3.1344 -10.6432 3.9913 20 6 2.2877 -10.9945 2.7566 21 6 4.1955 -8.8965 -1.4171 22 6 5.5436 -9.0258 -1.6939 23 6 5.9646 -9.2459 -2.9921 24 6 5.0374 -9.3373 -4.0133 25 6 3.6893 -9.2070 -3.7366 26 6 3.2682 -8.9878 -2.4383 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7312 0.8896 29 1 3.1247 -3.7312 -0.8904 30 1 1.3713 -5.4840 -0.8914 31 1 1.3707 -5.4846 0.8886 32 1 3.7597 -6.1477 0.8899 33 1 3.7610 -6.1473 -0.8900 34 1 2.0164 -7.8379 0.7789 35 1 2.3663 -10.3180 0.0708 36 1 4.0387 -10.7239 0.5261 37 1 2.3384 -8.8408 2.2516 38 1 4.8799 -10.5829 2.6328 39 1 4.4902 -8.9913 3.4178 40 1 2.6344 -9.9682 4.6859 41 1 3.5700 -11.5126 4.4838 42 1 1.2141 -10.9115 2.9253 43 1 2.5705 -11.9357 2.2850 44 1 6.2680 -8.9549 -0.8961 45 1 7.0182 -9.3425 -3.2091 46 1 5.3664 -9.5088 -5.0276 47 1 2.9649 -9.2780 -4.5345 48 1 2.2149 -8.8878 -2.2219 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181360045.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:07:15 Heat of formation + Delta-G solvation = 2.981452 kcal Electronic energy + Delta-G solvation = -23655.123792 eV Core-core repulsion = 20413.774750 eV Total energy + Delta-G solvation = -3241.349042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72861 -39.54269 -37.65854 -34.91774 -34.59612 -31.80645 -31.52690 -30.60297 -27.86793 -26.66922 -26.37457 -25.13617 -23.46263 -23.09753 -22.36566 -21.10634 -20.20928 -19.54887 -17.68653 -17.10329 -16.90855 -16.81522 -16.33837 -16.14931 -16.07420 -15.50429 -15.44981 -15.03385 -14.75966 -14.34109 -14.14341 -13.93094 -13.70228 -13.59733 -13.30572 -13.27166 -13.14415 -13.05054 -12.92340 -12.59251 -12.45971 -12.26320 -12.12509 -11.93027 -11.83724 -11.70584 -11.40366 -11.28913 -11.16318 -11.02140 -10.94820 -10.32872 -9.72535 -9.51247 -9.39831 -8.67282 -8.38375 -6.14509 0.52492 0.60990 1.30620 1.37415 1.48467 1.73841 2.27212 2.93997 2.95723 3.13715 3.33706 3.69597 3.72864 3.77445 3.98837 4.02378 4.03466 4.10707 4.24501 4.26621 4.33148 4.37323 4.38050 4.39744 4.52361 4.62415 4.69808 4.75082 4.79444 4.81079 4.84051 4.89538 4.92107 5.01066 5.09289 5.13724 5.19128 5.21417 5.25948 5.26980 5.31409 5.38877 5.43297 5.64071 5.65294 5.71920 5.74671 6.14486 6.17366 6.21442 6.49525 7.03875 8.71328 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010867 B = 0.002701 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.964328 B =10365.310603 C =12137.481449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.071 0.929 9 S -0.195 6.195 10 C -0.087 4.087 11 C -0.081 4.081 12 C 0.081 3.919 13 N -0.682 5.682 14 C 0.133 3.867 15 H 0.051 0.949 16 C -0.095 4.095 17 C -0.116 4.116 18 C -0.138 4.138 19 C -0.143 4.143 20 C -0.133 4.133 21 C -0.084 4.084 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.101 4.101 27 H 0.272 0.728 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.348 0.652 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.130 0.870 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.900 -25.620 0.805 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.686 4.686 8 H 0.089 0.911 9 S 0.034 5.966 10 C -0.237 4.237 11 C -0.120 4.120 12 C -0.050 4.050 13 N -0.316 5.316 14 C 0.024 3.976 15 H 0.069 0.931 16 C -0.132 4.132 17 C -0.134 4.134 18 C -0.176 4.176 19 C -0.181 4.181 20 C -0.170 4.170 21 C -0.084 4.084 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.119 4.119 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.170 0.830 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.146 0.854 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.148 0.852 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.519 -25.728 0.145 27.433 hybrid contribution 1.765 1.616 0.773 2.515 sum 11.284 -24.112 0.918 26.637 Atomic orbital electron populations 1.70157 1.07659 1.28504 1.48029 1.26074 0.96055 1.03112 0.93758 0.84966 0.78396 0.76642 0.78365 1.18733 1.19629 1.19527 1.23066 0.94675 0.92077 1.58799 0.91097 1.84610 1.13947 1.01079 1.97011 1.23145 1.00136 0.97775 1.02628 1.21107 0.97927 0.90304 1.02695 1.21757 0.95490 0.87565 1.00158 1.60382 1.18829 1.01647 1.50735 1.20352 0.92654 0.92871 0.91765 0.93136 1.21649 1.01753 0.95405 0.94437 1.22604 0.98127 0.99060 0.93629 1.23009 0.96647 1.00662 0.97271 1.22813 0.98046 1.00705 0.96520 1.22916 0.99633 0.97877 0.96611 1.19981 0.93272 0.99614 0.95575 1.21239 0.95256 1.00879 0.97483 1.21362 1.00452 1.00310 0.92793 1.21420 0.93260 1.00356 1.00061 1.21451 0.96626 1.00445 0.97064 1.21122 1.00243 0.98111 0.92457 0.91931 0.92054 0.92418 0.91677 0.91568 0.94797 0.92090 0.83025 0.91091 0.90528 0.89878 0.89540 0.92293 0.90447 0.90918 0.91470 0.89531 0.85353 0.84468 0.84617 0.85210 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 2 C 0.01 0.86 5.49 84.86 0.47 1.33 16 3 Si 0.99 44.50 29.55 68.60 2.03 46.53 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.54 -31.70 9.50 67.95 0.65 -31.05 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 9 S -0.20 -10.60 21.44 -56.49 -1.21 -11.81 16 10 C -0.09 -3.61 5.67 71.98 0.41 -3.20 16 11 C -0.08 -2.66 5.48 30.59 0.17 -2.50 16 12 C 0.08 2.14 5.48 86.30 0.47 2.62 16 13 N -0.68 -14.98 5.55 -495.47 -2.75 -17.73 16 14 C 0.13 2.52 2.25 44.17 0.10 2.62 16 15 H 0.05 0.99 7.66 -2.39 -0.02 0.97 16 16 C -0.09 -1.45 4.62 30.60 0.14 -1.31 16 17 C -0.12 -1.66 3.48 -10.27 -0.04 -1.69 16 18 C -0.14 -1.89 7.63 31.12 0.24 -1.65 16 19 C -0.14 -1.84 8.08 31.12 0.25 -1.58 16 20 C -0.13 -1.71 7.64 31.12 0.24 -1.47 16 21 C -0.08 -1.76 4.71 -19.87 -0.09 -1.86 16 22 C -0.13 -2.53 9.67 22.27 0.22 -2.31 16 23 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 24 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 25 C -0.14 -2.82 10.05 22.27 0.22 -2.60 16 26 C -0.10 -2.26 9.32 22.27 0.21 -2.05 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.06 2.40 8.14 -2.40 -0.02 2.38 16 30 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.03 0.86 8.06 -2.39 -0.02 0.84 16 33 H 0.06 1.75 8.00 -2.39 -0.02 1.73 16 34 H 0.35 7.04 6.47 -89.69 -0.58 6.46 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.10 7.84 -2.39 -0.02 1.08 16 37 H 0.08 1.33 6.41 -2.39 -0.02 1.31 16 38 H 0.09 1.07 7.90 -2.38 -0.02 1.05 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 1.01 8.10 -2.38 -0.02 0.99 16 44 H 0.13 2.07 8.04 -2.91 -0.02 2.05 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 46 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 47 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 48 H 0.12 2.84 7.72 -2.91 -0.02 2.82 16 Total: -1.00 -66.81 400.01 2.77 -64.04 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.33 Total: 25.17 kcal Atomic # 6 Polarization: -55.21 SS G_CDS: 4.09 Total: -51.12 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -2.46 Total: -72.81 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -10.60 SS G_CDS: -1.21 Total: -11.81 kcal Total: -66.81 2.77 -64.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181360045.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.019 kcal (2) G-P(sol) polarization free energy of solvation -66.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds