Wall clock time and date at job start Sat Apr 11 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00169 * 2 1 4 4 H 1.48499 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47456 * 300.00815 * 3 2 1 6 6 H 1.48513 * 109.47093 * 60.00452 * 3 2 1 7 7 C 1.38815 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99348 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00165 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99947 * 179.97438 * 9 7 2 11 11 C 1.53955 * 113.58426 * 205.00405 * 10 9 7 12 12 C 1.52904 * 86.78368 * 220.67076 * 11 10 9 13 13 C 1.52907 * 88.04564 * 24.89678 * 12 11 10 14 14 C 1.52916 * 121.13706 * 150.61789 * 12 11 10 15 15 C 1.53950 * 86.78164 * 100.81683 * 14 12 11 16 16 N 1.46494 * 113.57939 * 139.33612 * 15 14 12 17 17 C 1.34777 * 120.00084 * 155.00015 * 16 15 14 18 18 O 1.21277 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99760 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.47005 * 180.02562 * 19 17 16 21 21 N 1.46494 * 109.47329 * 179.97438 * 20 19 17 22 22 C 1.34438 * 126.82245 * 124.99870 * 21 20 19 23 23 N 1.30831 * 108.07816 * 180.20890 * 22 21 20 24 24 C 1.33251 * 109.82578 * 359.59820 * 23 22 21 25 25 N 1.30712 * 108.94547 * 0.40841 * 24 23 22 26 26 C 1.52916 * 121.13319 * 259.17644 * 12 11 10 27 27 H 0.97002 * 119.99788 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00157 * 0.02562 * 9 7 2 29 29 H 1.09004 * 112.88076 * 336.14927 * 10 9 7 30 30 H 1.08995 * 113.66051 * 106.19240 * 11 10 9 31 31 H 1.08998 * 113.74127 * 335.15128 * 11 10 9 32 32 H 1.09003 * 113.66292 * 89.57542 * 13 12 11 33 33 H 1.09007 * 113.66387 * 220.63526 * 13 12 11 34 34 H 1.08998 * 113.65914 * 346.34643 * 14 12 11 35 35 H 1.09000 * 113.74267 * 215.30228 * 14 12 11 36 36 H 1.09002 * 113.58078 * 270.05128 * 15 14 12 37 37 H 0.97000 * 120.00097 * 335.00080 * 16 15 14 38 38 H 1.08996 * 109.47499 * 59.99925 * 19 17 16 39 39 H 1.09001 * 109.47193 * 299.99356 * 19 17 16 40 40 H 1.09005 * 109.47410 * 59.99635 * 20 19 17 41 41 H 1.09000 * 109.46984 * 299.99944 * 20 19 17 42 42 H 1.08002 * 125.95849 * 359.93825 * 22 21 20 43 43 H 1.07996 * 125.52171 * 180.12701 * 24 23 22 44 44 H 1.09006 * 113.66117 * 144.70854 * 26 12 11 45 45 H 1.08993 * 113.66139 * 13.65300 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0017 11 6 1.2581 -4.8293 -0.5980 12 6 1.8335 -5.6838 0.5319 13 6 2.0038 -4.4003 1.3453 14 6 1.0605 -6.8783 1.0923 15 6 1.9761 -7.7651 0.2290 16 7 2.4118 -8.9899 0.9043 17 6 2.7661 -10.0696 0.1794 18 8 2.7246 -10.0269 -1.0319 19 6 3.2138 -11.3297 0.8742 20 6 3.5563 -12.3939 -0.1704 21 7 3.9921 -13.6187 0.5049 22 6 3.4799 -14.8516 0.3472 23 7 4.1392 -15.6681 1.1283 24 6 5.0813 -14.9978 1.7908 25 7 5.0285 -13.7383 1.4451 26 6 3.0117 -6.6275 0.2881 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 3.0651 -3.5644 -0.4085 30 1 1.5961 -5.1299 -1.5896 31 1 0.1776 -4.6978 -0.5402 32 1 1.1331 -4.1469 1.9502 33 1 2.9377 -4.3583 1.9060 34 1 0.0140 -6.9035 0.7885 35 1 1.1944 -7.0240 2.1642 36 1 1.5863 -7.9500 -0.7721 37 1 2.4453 -9.0239 1.8731 38 1 2.4123 -11.6951 1.5162 39 1 4.0956 -11.1176 1.4788 40 1 4.3580 -12.0283 -0.8121 41 1 2.6749 -12.6061 -0.7754 42 1 2.6635 -15.1202 -0.3068 43 1 5.7730 -15.4251 2.5016 44 1 3.6952 -6.7017 1.1340 45 1 3.5239 -6.4525 -0.6580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120631272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:05:55 Heat of formation + Delta-G solvation = 106.955631 kcal Electronic energy + Delta-G solvation = -25223.130977 eV Core-core repulsion = 21472.290130 eV Total energy + Delta-G solvation = -3750.840847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.47982 -40.71269 -39.47437 -36.08117 -35.23764 -33.76129 -32.36295 -31.64618 -30.88829 -29.51282 -25.85139 -25.79392 -25.25607 -24.08530 -22.68284 -22.42834 -21.72403 -20.72327 -20.05538 -18.25696 -17.80998 -17.01659 -16.93920 -16.58064 -16.32013 -15.70686 -15.33601 -15.13794 -14.77683 -14.59674 -14.37282 -14.06917 -13.88877 -13.46541 -13.07506 -12.86237 -12.65924 -12.51879 -12.44437 -12.19125 -11.81118 -11.70904 -11.37558 -11.03011 -10.93543 -10.74443 -10.54619 -10.43367 -10.29194 -10.21490 -10.09075 -10.01416 -9.83844 -9.75360 -9.41193 -9.20061 -8.87843 -6.96513 -5.79545 -3.07943 1.17750 1.78080 2.22992 2.54124 2.88182 3.41512 3.47464 3.49545 3.88936 3.93123 4.14473 4.30571 4.48512 4.53756 4.56522 4.63444 4.66672 4.72377 4.78448 4.83044 5.12234 5.21190 5.35783 5.40171 5.50302 5.65606 5.73306 5.77750 5.87103 5.88794 5.93905 5.98090 6.02002 6.15110 6.19073 6.31336 6.33498 6.38939 6.41429 6.61085 6.89501 7.10594 7.17795 7.63408 7.69186 7.84195 8.39357 9.50489 10.09072 10.43375 11.43014 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.049123 B = 0.001661 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.864601 B =16850.767672 C =17008.833807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.129 4.129 12 C -0.102 4.102 13 C -0.149 4.149 14 C -0.130 4.130 15 C 0.122 3.878 16 N -0.715 5.715 17 C 0.519 3.481 18 O -0.542 6.542 19 C -0.154 4.154 20 C 0.146 3.854 21 N -0.380 5.380 22 C 0.256 3.744 23 N -0.549 5.549 24 C 0.198 3.802 25 N -0.320 5.320 26 C -0.124 4.124 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.401 0.599 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.220 0.780 43 H 0.217 0.783 44 H 0.083 0.917 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -29.087 3.434 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.168 4.168 12 C -0.103 4.103 13 C -0.190 4.190 14 C -0.168 4.168 15 C 0.017 3.983 16 N -0.365 5.365 17 C 0.304 3.696 18 O -0.420 6.420 19 C -0.195 4.195 20 C 0.023 3.977 21 N -0.171 5.171 22 C -0.041 4.041 23 N -0.276 5.276 24 C -0.105 4.105 25 N -0.147 5.147 26 C -0.163 4.163 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.133 0.867 37 H 0.236 0.764 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.130 0.870 42 H 0.236 0.764 43 H 0.233 0.767 44 H 0.102 0.898 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.669 -28.589 2.811 29.281 hybrid contribution -0.053 0.957 0.481 1.072 sum 5.616 -27.632 3.292 28.389 Atomic orbital electron populations 1.69672 1.05133 1.25587 1.57715 1.24761 0.95523 0.97767 1.02925 0.86123 0.78813 0.84105 0.77185 1.20536 1.21855 1.21870 1.19364 0.91125 0.84264 1.42608 0.91051 1.42419 1.05738 0.99926 1.87047 1.21540 0.95234 0.84834 0.92771 1.23215 1.00650 0.96718 0.96199 1.22073 0.96221 0.92366 0.99617 1.23645 1.01086 0.94495 0.99758 1.23180 0.99058 0.95259 0.99349 1.22695 0.96391 0.81166 0.98003 1.46068 1.67169 1.13051 1.10208 1.20297 0.77003 0.84557 0.87750 1.90743 1.53522 1.83870 1.13820 1.21885 1.04585 0.93420 0.99600 1.21557 1.02282 0.80607 0.93224 1.50633 1.25285 1.09061 1.32087 1.26146 0.98809 0.81166 0.97935 1.70571 1.10496 1.34120 1.12454 1.26048 0.97402 0.87687 0.99375 1.78043 1.07655 1.20565 1.08481 1.23140 0.96384 0.94325 1.02425 0.93539 0.78123 0.90789 0.92063 0.90011 0.90283 0.92720 0.90805 0.89859 0.86711 0.76418 0.88250 0.87301 0.88178 0.87002 0.76400 0.76668 0.89836 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.71 -17.71 5.40 -52.47 -0.28 -18.00 16 10 C 0.17 3.26 4.48 -66.95 -0.30 2.96 16 11 C -0.13 -2.05 7.59 -26.28 -0.20 -2.25 16 12 C -0.10 -1.34 1.11 -154.71 -0.17 -1.52 16 13 C -0.15 -2.45 7.64 -26.28 -0.20 -2.65 16 14 C -0.13 -1.38 7.59 -26.28 -0.20 -1.58 16 15 C 0.12 1.25 4.24 -66.95 -0.28 0.97 16 16 N -0.72 -5.70 5.35 -52.85 -0.28 -5.98 16 17 C 0.52 4.47 7.83 -10.98 -0.09 4.38 16 18 O -0.54 -6.67 15.58 5.56 0.09 -6.59 16 19 C -0.15 -0.87 5.91 -27.88 -0.16 -1.03 16 20 C 0.15 0.84 5.84 -4.04 -0.02 0.81 16 21 N -0.38 -2.67 3.69 -62.63 -0.23 -2.91 16 22 C 0.26 1.60 12.63 -90.65 -1.14 0.45 16 23 N -0.55 -4.68 11.19 -15.83 -0.18 -4.86 16 24 C 0.20 1.55 13.03 -91.80 -1.20 0.35 16 25 N -0.32 -2.84 12.57 29.29 0.37 -2.47 16 26 C -0.12 -1.43 7.64 -26.28 -0.20 -1.63 16 27 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.38 10.12 7.92 -40.82 -0.32 9.80 16 29 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.12 1.38 7.47 -51.93 -0.39 0.99 16 37 H 0.40 2.21 8.73 -40.82 -0.36 1.85 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.11 0.46 8.04 -51.93 -0.42 0.04 16 42 H 0.22 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.22 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -34.79 380.70 -10.44 -45.23 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -6.94 Total: 7.94 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -4.42 Total: -8.07 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.12 Total: -61.51 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: 0.09 Total: -6.59 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.79 -10.44 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120631272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.184 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds