Wall clock time and date at job start Sat Apr 11 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00169 * 2 1 4 4 H 1.48499 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47456 * 300.00815 * 3 2 1 6 6 H 1.48513 * 109.47093 * 60.00452 * 3 2 1 7 7 C 1.38815 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99348 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00165 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99947 * 179.97438 * 9 7 2 11 11 C 1.53955 * 113.58426 * 205.00405 * 10 9 7 12 12 C 1.52904 * 86.78368 * 220.67076 * 11 10 9 13 13 C 1.52907 * 88.04564 * 24.89678 * 12 11 10 14 14 C 1.52916 * 121.13706 * 150.61789 * 12 11 10 15 15 C 1.53950 * 86.78164 * 100.81683 * 14 12 11 16 16 N 1.46494 * 113.57939 * 139.33612 * 15 14 12 17 17 C 1.34777 * 120.00084 * 155.00015 * 16 15 14 18 18 O 1.21277 * 120.00025 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99760 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.47005 * 180.02562 * 19 17 16 21 21 N 1.46494 * 109.47329 * 179.97438 * 20 19 17 22 22 C 1.34438 * 126.82245 * 124.99870 * 21 20 19 23 23 N 1.30831 * 108.07816 * 180.20890 * 22 21 20 24 24 C 1.33251 * 109.82578 * 359.59820 * 23 22 21 25 25 N 1.30712 * 108.94547 * 0.40841 * 24 23 22 26 26 C 1.52916 * 121.13319 * 259.17644 * 12 11 10 27 27 H 0.97002 * 119.99788 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00157 * 0.02562 * 9 7 2 29 29 H 1.09004 * 112.88076 * 336.14927 * 10 9 7 30 30 H 1.08995 * 113.66051 * 106.19240 * 11 10 9 31 31 H 1.08998 * 113.74127 * 335.15128 * 11 10 9 32 32 H 1.09003 * 113.66292 * 89.57542 * 13 12 11 33 33 H 1.09007 * 113.66387 * 220.63526 * 13 12 11 34 34 H 1.08998 * 113.65914 * 346.34643 * 14 12 11 35 35 H 1.09000 * 113.74267 * 215.30228 * 14 12 11 36 36 H 1.09002 * 113.58078 * 270.05128 * 15 14 12 37 37 H 0.97000 * 120.00097 * 335.00080 * 16 15 14 38 38 H 1.08996 * 109.47499 * 59.99925 * 19 17 16 39 39 H 1.09001 * 109.47193 * 299.99356 * 19 17 16 40 40 H 1.09005 * 109.47410 * 59.99635 * 20 19 17 41 41 H 1.09000 * 109.46984 * 299.99944 * 20 19 17 42 42 H 1.08002 * 125.95849 * 359.93825 * 22 21 20 43 43 H 1.07996 * 125.52171 * 180.12701 * 24 23 22 44 44 H 1.09006 * 113.66117 * 144.70854 * 26 12 11 45 45 H 1.08993 * 113.66139 * 13.65300 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3964 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0017 11 6 1.2581 -4.8293 -0.5980 12 6 1.8335 -5.6838 0.5319 13 6 2.0038 -4.4003 1.3453 14 6 1.0605 -6.8783 1.0923 15 6 1.9761 -7.7651 0.2290 16 7 2.4118 -8.9899 0.9043 17 6 2.7661 -10.0696 0.1794 18 8 2.7246 -10.0269 -1.0319 19 6 3.2138 -11.3297 0.8742 20 6 3.5563 -12.3939 -0.1704 21 7 3.9921 -13.6187 0.5049 22 6 3.4799 -14.8516 0.3472 23 7 4.1392 -15.6681 1.1283 24 6 5.0813 -14.9978 1.7908 25 7 5.0285 -13.7383 1.4451 26 6 3.0117 -6.6275 0.2881 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 3.0651 -3.5644 -0.4085 30 1 1.5961 -5.1299 -1.5896 31 1 0.1776 -4.6978 -0.5402 32 1 1.1331 -4.1469 1.9502 33 1 2.9377 -4.3583 1.9060 34 1 0.0140 -6.9035 0.7885 35 1 1.1944 -7.0240 2.1642 36 1 1.5863 -7.9500 -0.7721 37 1 2.4453 -9.0239 1.8731 38 1 2.4123 -11.6951 1.5162 39 1 4.0956 -11.1176 1.4788 40 1 4.3580 -12.0283 -0.8121 41 1 2.6749 -12.6061 -0.7754 42 1 2.6635 -15.1202 -0.3068 43 1 5.7730 -15.4251 2.5016 44 1 3.6952 -6.7017 1.1340 45 1 3.5239 -6.4525 -0.6580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120631272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:05:55 Heat of formation + Delta-G solvation = 85.189629 kcal Electronic energy + Delta-G solvation = -25224.074821 eV Core-core repulsion = 21472.290130 eV Total energy + Delta-G solvation = -3751.784691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.97884 -41.68614 -40.38052 -37.30523 -35.80261 -35.26022 -33.66940 -32.17345 -31.74098 -31.07207 -26.77272 -26.71727 -26.40978 -25.83717 -23.69751 -22.90293 -22.43015 -21.47457 -21.31466 -19.46413 -18.80238 -18.52076 -17.50759 -17.35070 -16.95087 -16.88582 -16.28034 -16.05134 -15.87106 -15.68473 -15.34351 -15.05820 -14.93627 -14.52658 -14.31150 -13.64639 -13.61710 -13.56370 -13.42526 -13.13841 -12.98880 -12.96309 -12.85613 -12.34537 -12.26735 -12.23677 -12.05014 -11.90526 -11.41511 -11.10764 -11.06182 -10.95557 -10.81564 -10.80140 -10.73195 -10.58301 -10.00736 -8.97279 -7.95468 -5.23301 0.69495 1.31802 1.46761 1.47250 1.56058 1.57355 2.02729 2.24131 2.55876 3.36174 3.47615 3.50725 3.53473 3.55658 3.63097 3.70408 3.81644 3.90465 4.00570 4.13877 4.21855 4.28330 4.34234 4.36942 4.52141 4.61559 4.68476 4.78912 4.80480 4.83255 4.94512 5.00451 5.06072 5.09757 5.14105 5.27064 5.29329 5.44489 5.48552 5.56093 5.62708 5.70938 5.89237 6.27468 6.53504 7.13427 7.21140 7.33057 8.11158 8.33840 9.28130 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.049123 B = 0.001661 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.864601 B =16850.767672 C =17008.833807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.729 5.729 10 C 0.145 3.855 11 C -0.122 4.122 12 C -0.090 4.090 13 C -0.139 4.139 14 C -0.118 4.118 15 C 0.132 3.868 16 N -0.705 5.705 17 C 0.520 3.480 18 O -0.581 6.581 19 C -0.139 4.139 20 C 0.146 3.854 21 N -0.383 5.383 22 C 0.261 3.739 23 N -0.580 5.580 24 C 0.192 3.808 25 N -0.351 5.351 26 C -0.121 4.121 27 H 0.251 0.749 28 H 0.373 0.627 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.417 0.583 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.257 0.743 43 H 0.238 0.762 44 H 0.099 0.901 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.805 -30.955 4.287 31.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.093 0.907 9 N -0.367 5.367 10 C 0.035 3.965 11 C -0.161 4.161 12 C -0.092 4.092 13 C -0.179 4.179 14 C -0.156 4.156 15 C 0.027 3.973 16 N -0.356 5.356 17 C 0.307 3.693 18 O -0.461 6.461 19 C -0.180 4.180 20 C 0.024 3.976 21 N -0.173 5.173 22 C -0.035 4.035 23 N -0.308 5.308 24 C -0.110 4.110 25 N -0.179 5.179 26 C -0.159 4.159 27 H 0.059 0.941 28 H 0.205 0.795 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.254 0.746 38 H 0.137 0.863 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.148 0.852 42 H 0.273 0.727 43 H 0.254 0.746 44 H 0.117 0.883 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.324 -30.504 3.697 31.371 hybrid contribution -0.208 1.458 0.183 1.484 sum 6.116 -29.046 3.880 29.936 Atomic orbital electron populations 1.69822 1.06596 1.25939 1.59745 1.25556 0.96386 1.01069 1.03888 0.85092 0.78245 0.79913 0.76631 1.19080 1.22134 1.22031 1.19749 0.91507 0.85511 1.40747 0.90681 1.42604 1.05351 1.01088 1.87615 1.21940 0.95103 0.83881 0.95562 1.23070 0.99843 0.95682 0.97505 1.21898 0.98031 0.92089 0.97137 1.23400 1.00870 0.95604 0.98059 1.23144 0.98867 0.92975 1.00595 1.22344 0.95605 0.81875 0.97508 1.45922 1.66587 1.12108 1.10993 1.20729 0.76041 0.85238 0.87258 1.90736 1.55159 1.84550 1.15647 1.21769 1.05108 0.91777 0.99330 1.21608 1.02515 0.80367 0.93133 1.50669 1.25078 1.09632 1.31950 1.26915 0.98775 0.80487 0.97281 1.70593 1.11432 1.35147 1.13634 1.26561 0.97515 0.87514 0.99428 1.77984 1.08926 1.21270 1.09700 1.23174 0.96167 0.94014 1.02584 0.94059 0.79475 0.91366 0.91552 0.90694 0.91584 0.92026 0.90607 0.87619 0.88278 0.74595 0.86302 0.87170 0.89519 0.85154 0.72697 0.74568 0.88306 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.60 13.06 21.65 0.28 -59.31 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.24 -13.60 9.97 84.03 0.84 -12.76 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 9 N -0.73 -36.94 5.40 -319.91 -1.73 -38.67 16 10 C 0.14 5.64 4.48 45.63 0.20 5.84 16 11 C -0.12 -3.86 7.59 30.88 0.23 -3.62 16 12 C -0.09 -2.25 1.11 -52.31 -0.06 -2.30 16 13 C -0.14 -4.44 7.64 30.89 0.24 -4.20 16 14 C -0.12 -2.17 7.59 30.89 0.23 -1.93 16 15 C 0.13 2.42 4.24 45.63 0.19 2.61 16 16 N -0.71 -9.22 5.35 -439.52 -2.35 -11.58 16 17 C 0.52 7.81 7.83 87.66 0.69 8.49 16 18 O -0.58 -13.51 15.58 -3.02 -0.05 -13.56 16 19 C -0.14 -1.23 5.91 29.85 0.18 -1.05 16 20 C 0.15 1.40 5.84 86.38 0.50 1.90 16 21 N -0.38 -4.70 3.69 -352.06 -1.30 -6.00 16 22 C 0.26 2.70 12.63 180.36 2.28 4.98 16 23 N -0.58 -9.05 11.19 -203.99 -2.28 -11.33 16 24 C 0.19 2.80 13.03 180.76 2.36 5.16 16 25 N -0.35 -5.80 12.57 -61.24 -0.77 -6.57 16 26 C -0.12 -2.53 7.64 30.89 0.24 -2.29 16 27 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.37 20.27 7.92 -92.71 -0.73 19.54 16 29 H 0.07 2.70 8.10 -2.38 -0.02 2.69 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.54 8.12 -2.39 -0.02 1.52 16 36 H 0.10 2.23 7.47 -2.39 -0.02 2.21 16 37 H 0.42 3.04 8.73 -92.71 -0.81 2.23 16 38 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.09 1.09 8.10 -2.38 -0.02 1.07 16 41 H 0.13 0.76 8.04 -2.39 -0.02 0.74 16 42 H 0.26 0.17 8.06 -2.91 -0.02 0.15 16 43 H 0.24 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -76.52 380.70 1.88 -74.64 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.53 Total: 27.21 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 8.58 Total: -3.16 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -8.15 Total: -133.45 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.05 Total: -13.56 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -76.52 1.88 -74.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120631272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.832 kcal (2) G-P(sol) polarization free energy of solvation -76.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds