Wall clock time and date at job start Sat Apr 11 2020 00:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48503 * 109.47016 * 264.98349 * 3 2 1 5 5 H 1.48497 * 109.47010 * 24.98558 * 3 2 1 6 6 H 1.48504 * 109.46939 * 144.98385 * 3 2 1 7 7 C 1.38817 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00107 * 187.32309 * 7 2 1 9 9 N 1.36935 * 119.99549 * 7.32076 * 7 2 1 10 10 C 1.47021 * 125.65188 * 5.84432 * 9 7 2 11 11 C 1.54320 * 107.27594 * 181.02027 * 10 9 7 12 12 H 1.08994 * 110.72470 * 140.55613 * 11 10 9 13 13 N 1.46497 * 110.72269 * 263.65686 * 11 10 9 14 14 C 1.34779 * 120.00102 * 273.54168 * 13 11 10 15 15 O 1.21282 * 119.99625 * 359.97438 * 14 13 11 16 16 C 1.50700 * 120.00227 * 179.97438 * 14 13 11 17 17 C 1.53004 * 109.47177 * 180.02562 * 16 14 13 18 18 C 1.52992 * 109.47167 * 179.97438 * 17 16 14 19 19 C 1.52997 * 117.50023 * 243.74843 * 18 17 16 20 20 C 1.52998 * 117.49916 * 175.08679 * 18 17 16 21 21 C 1.55160 * 102.94030 * 22.19672 * 11 10 9 22 22 H 1.08995 * 111.00570 * 82.60823 * 21 11 10 23 23 N 1.46506 * 111.00440 * 206.42501 * 21 11 10 24 24 C 1.35317 * 125.86847 * 84.99835 * 23 21 11 25 25 C 1.35348 * 106.17414 * 180.02562 * 24 23 21 26 26 N 1.33776 * 106.49568 * 359.97438 * 25 24 23 27 27 N 1.28635 * 108.88519 * 359.73816 * 26 25 24 28 28 C 1.47433 * 125.64649 * 185.53800 * 9 7 2 29 29 H 0.97005 * 119.99956 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.88245 * 300.44264 * 10 9 7 31 31 H 1.09005 * 109.88181 * 61.60513 * 10 9 7 32 32 H 0.97005 * 119.99913 * 93.54357 * 13 11 10 33 33 H 1.09000 * 109.47151 * 300.00224 * 16 14 13 34 34 H 1.09001 * 109.47117 * 60.00137 * 16 14 13 35 35 H 1.09006 * 109.46884 * 300.00437 * 17 16 14 36 36 H 1.08999 * 109.46601 * 60.00179 * 17 16 14 37 37 H 1.09011 * 115.55000 * 29.41953 * 18 17 16 38 38 H 1.09000 * 117.49768 * 359.97438 * 19 18 17 39 39 H 1.09002 * 117.50156 * 145.02291 * 19 18 17 40 40 H 1.09002 * 117.50122 * 214.98042 * 20 18 17 41 41 H 1.09000 * 117.49715 * 359.97438 * 20 18 17 42 42 H 1.07997 * 126.90869 * 0.02562 * 24 23 21 43 43 H 1.07995 * 126.75014 * 179.97438 * 25 24 23 44 44 H 1.09000 * 110.36086 * 274.74386 * 28 9 7 45 45 H 1.08996 * 110.36312 * 37.07047 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6037 1.9852 -1.3947 5 1 1.3987 2.6809 0.5914 6 1 3.4907 1.4730 0.8034 7 6 2.0102 -1.2022 0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3339 -2.3833 -0.1501 10 6 -0.1009 -2.5180 -0.4409 11 6 -0.4176 -4.0274 -0.4962 12 1 -1.3801 -4.2369 -0.0297 13 7 -0.3977 -4.5109 -1.8789 14 6 -1.5075 -4.4251 -2.6388 15 8 -2.5227 -3.9481 -2.1777 16 6 -1.4869 -4.9220 -4.0614 17 6 -2.8628 -4.7090 -4.6960 18 6 -2.8417 -5.2128 -6.1404 19 6 -3.0613 -4.1836 -7.2510 20 6 -4.1612 -5.1937 -6.9146 21 6 0.7390 -4.6553 0.3257 22 1 0.5288 -4.6094 1.3942 23 7 0.9954 -6.0343 -0.0974 24 6 1.7845 -6.4134 -1.1293 25 6 1.7365 -7.7656 -1.1637 26 7 0.9316 -8.1427 -0.1639 27 7 0.5135 -7.0937 0.4522 28 6 1.9252 -3.7304 -0.0536 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6852 -2.0453 0.3485 31 1 -0.3295 -2.0560 -1.4014 32 1 0.4142 -4.8929 -2.2475 33 1 -0.7365 -4.3707 -4.6280 34 1 -1.2422 -5.9841 -4.0718 35 1 -3.6135 -5.2600 -4.1294 36 1 -3.1070 -3.6467 -4.6857 37 1 -2.1513 -6.0319 -6.3427 38 1 -3.2213 -3.1475 -6.9524 39 1 -2.5159 -4.3256 -8.1839 40 1 -4.3389 -5.9998 -7.6265 41 1 -5.0444 -4.8225 -6.3947 42 1 2.3405 -5.7669 -1.7920 43 1 2.2476 -8.4127 -1.8610 44 1 2.3497 -4.0278 -1.0125 45 1 2.6885 -3.7547 0.7241 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128851691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:06:16 Heat of formation + Delta-G solvation = 117.256394 kcal Electronic energy + Delta-G solvation = -27379.406865 eV Core-core repulsion = 23629.012692 eV Total energy + Delta-G solvation = -3750.394172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.17485 -39.81784 -38.12345 -37.37558 -34.26065 -33.51305 -32.30137 -31.69283 -30.97753 -28.95381 -27.70085 -25.30999 -24.76838 -22.75991 -22.51647 -22.36818 -20.93547 -20.45941 -20.27219 -19.94650 -17.84324 -17.18697 -16.76237 -16.08450 -15.85910 -15.51540 -15.20687 -15.00261 -14.76383 -14.35898 -14.19866 -13.88486 -13.63114 -13.25700 -13.10322 -12.63184 -12.25779 -12.18571 -11.72756 -11.65982 -11.56572 -11.45094 -11.31333 -11.27890 -11.08991 -11.01878 -10.80994 -10.70720 -10.44801 -10.25649 -10.06716 -10.00490 -9.80491 -9.58465 -9.29942 -8.87568 -8.75477 -7.16059 -5.92046 -3.33455 1.71574 2.39770 2.67608 2.88797 3.28560 3.33027 3.33692 3.36398 3.66030 4.27778 4.45503 4.51118 4.56298 4.71777 4.73329 4.79780 4.87492 5.02674 5.15790 5.20237 5.20637 5.26519 5.31075 5.33468 5.38874 5.48470 5.61413 5.67879 5.75852 5.85874 5.90817 5.95142 5.96906 6.05110 6.06597 6.09609 6.23342 6.28682 6.46647 6.77806 7.23141 7.33500 7.56005 7.67706 7.96764 8.45302 8.63886 8.93034 9.53707 10.12695 11.16210 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.008348 B = 0.004692 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3353.383976 B = 5966.343979 C = 8619.133605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.002 3.998 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.594 5.594 10 C 0.167 3.833 11 C 0.116 3.884 12 H 0.102 0.898 13 N -0.719 5.719 14 C 0.514 3.486 15 O -0.535 6.535 16 C -0.136 4.136 17 C -0.073 4.073 18 C -0.153 4.153 19 C -0.182 4.182 20 C -0.182 4.182 21 C 0.111 3.889 22 H 0.133 0.867 23 N -0.265 5.265 24 C -0.057 4.057 25 C -0.056 4.056 26 N -0.281 5.281 27 N -0.083 5.083 28 C 0.134 3.866 29 H 0.258 0.742 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.392 0.608 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.189 0.811 43 H 0.186 0.814 44 H 0.030 0.970 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 -11.415 -10.411 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.196 4.196 3 Si 0.746 3.254 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.321 5.321 10 C 0.042 3.958 11 C 0.009 3.991 12 H 0.120 0.880 13 N -0.372 5.372 14 C 0.301 3.699 15 O -0.411 6.411 16 C -0.176 4.176 17 C -0.111 4.111 18 C -0.171 4.171 19 C -0.219 4.219 20 C -0.219 4.219 21 C 0.007 3.993 22 H 0.151 0.849 23 N -0.059 5.059 24 C -0.208 4.208 25 C -0.213 4.213 26 N -0.146 5.146 27 N -0.063 5.063 28 C 0.006 3.994 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.227 0.773 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.206 0.794 43 H 0.203 0.797 44 H 0.048 0.952 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.472 -11.358 -8.901 14.505 hybrid contribution 1.666 1.232 -1.106 2.349 sum 0.194 -10.126 -10.007 14.238 Atomic orbital electron populations 1.69897 1.05007 1.25837 1.54955 1.24874 0.95685 0.98008 1.01040 0.86086 0.78602 0.82909 0.77794 1.21335 1.21476 1.20510 1.18984 0.90952 0.81848 1.45414 0.90003 1.44368 1.05031 0.99108 1.83543 1.21787 0.85407 0.86497 1.02142 1.22803 0.97900 0.97293 0.81099 0.88047 1.45973 1.14024 1.63915 1.13280 1.20613 0.82975 0.78393 0.87926 1.90717 1.31954 1.44454 1.73975 1.21632 1.00368 1.02685 0.92876 1.20909 0.95718 1.02265 0.92187 1.22348 1.00182 1.01586 0.92956 1.23068 1.02994 0.96146 0.99654 1.22966 0.93112 1.02250 1.03570 1.23726 0.99894 0.73876 1.01813 0.84880 1.47481 1.29649 1.08568 1.20185 1.23651 1.02617 0.97379 0.97193 1.23548 1.03293 0.93182 1.01321 1.75093 1.11904 1.20409 1.07218 1.78321 1.19512 0.88044 1.20416 1.21863 0.92377 0.86197 0.98974 0.93181 0.90118 0.93394 0.77272 0.88802 0.89230 0.90869 0.90827 0.87833 0.88634 0.89012 0.88999 0.88734 0.79436 0.79657 0.95233 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.23 10.46 55.49 0.58 -24.65 16 2 C 0.00 0.05 5.45 -17.43 -0.10 -0.04 16 3 Si 0.92 20.75 29.56 -169.99 -5.02 15.72 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.24 -6.15 10.26 -15.06 -0.15 -6.30 16 8 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 9 N -0.59 -13.22 3.39 -169.93 -0.58 -13.79 16 10 C 0.17 3.70 5.19 -3.07 -0.02 3.69 16 11 C 0.12 2.04 3.11 -66.10 -0.21 1.83 16 12 H 0.10 1.90 7.69 -51.93 -0.40 1.50 16 13 N -0.72 -11.03 4.74 -52.03 -0.25 -11.28 16 14 C 0.51 8.27 7.83 -10.98 -0.09 8.18 16 15 O -0.53 -10.77 15.71 5.56 0.09 -10.68 16 16 C -0.14 -1.57 5.66 -27.88 -0.16 -1.73 16 17 C -0.07 -0.86 4.79 -26.73 -0.13 -0.99 16 18 C -0.15 -1.46 5.73 -90.63 -0.52 -1.98 16 19 C -0.18 -1.65 10.18 -26.69 -0.27 -1.92 16 20 C -0.18 -1.62 10.25 -26.69 -0.27 -1.90 16 21 C 0.11 1.73 3.99 -65.66 -0.26 1.47 16 22 H 0.13 2.08 8.14 -51.93 -0.42 1.65 16 23 N -0.27 -3.84 3.08 -52.56 -0.16 -4.01 16 24 C -0.06 -0.67 8.64 -17.05 -0.15 -0.82 16 25 C -0.06 -0.66 12.05 -17.74 -0.21 -0.87 16 26 N -0.28 -4.41 12.41 30.23 0.38 -4.04 16 27 N -0.08 -1.38 13.16 60.35 0.79 -0.59 16 28 C 0.13 2.28 6.57 -2.40 -0.02 2.26 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.08 2.05 6.88 -51.93 -0.36 1.69 16 31 H 0.05 1.21 7.88 -51.93 -0.41 0.81 16 32 H 0.39 5.09 6.22 -40.82 -0.25 4.83 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.07 0.98 7.83 -51.93 -0.41 0.58 16 37 H 0.10 0.87 8.08 -51.92 -0.42 0.45 16 38 H 0.10 0.92 8.03 -51.93 -0.42 0.50 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.19 1.66 6.60 -52.49 -0.35 1.32 16 43 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.03 0.46 6.25 -51.93 -0.32 0.13 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -31.28 368.30 -7.85 -39.14 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.68 Total: 7.75 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.55 Total: 0.88 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.76 Total: -58.36 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.28 -7.85 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128851691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.393 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds