Wall clock time and date at job start Sat Apr 11 2020 00:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99701 * 2 1 4 4 C 1.50697 * 120.00158 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47286 * 94.99949 * 4 2 1 6 6 C 1.50701 * 109.47111 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99974 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00236 * 179.97438 * 6 5 4 9 9 C 1.47020 * 125.64468 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.27181 * 178.90323 * 9 8 6 11 11 H 1.09006 * 110.72009 * 96.34264 * 10 9 8 12 12 N 1.46496 * 110.72507 * 219.44845 * 10 9 8 13 13 C 1.36945 * 119.99718 * 273.54571 * 12 10 9 14 14 H 1.07997 * 119.99756 * 359.97438 * 13 12 10 15 15 C 1.38805 * 119.99878 * 179.97438 * 13 12 10 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.55158 * 102.93996 * 337.80956 * 10 9 8 22 22 H 1.09002 * 111.00742 * 153.57117 * 21 10 9 23 23 N 1.46495 * 111.00454 * 277.42160 * 21 10 9 24 24 C 1.35322 * 125.86254 * 84.71951 * 23 21 10 25 25 C 1.35359 * 106.17129 * 179.90490 * 24 23 21 26 26 N 1.33770 * 106.49602 * 0.35057 * 25 24 23 27 27 N 1.28639 * 108.88505 * 359.77245 * 26 25 24 28 28 C 1.47424 * 125.65023 * 179.97438 * 8 6 5 29 29 H 1.07997 * 120.00271 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99599 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46929 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47216 * 300.00454 * 3 2 1 33 33 H 1.09004 * 109.47067 * 59.99807 * 3 2 1 34 34 H 1.09000 * 109.47193 * 334.99550 * 4 2 1 35 35 H 1.09001 * 109.46683 * 214.99899 * 4 2 1 36 36 H 1.09000 * 109.47330 * 59.99686 * 5 4 2 37 37 H 1.09001 * 109.47219 * 299.99622 * 5 4 2 38 38 H 1.08998 * 109.88325 * 59.48645 * 9 8 6 39 39 H 1.08999 * 109.88515 * 298.32098 * 9 8 6 40 40 H 0.96996 * 120.00499 * 93.54301 * 12 10 9 41 41 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 42 42 H 1.07996 * 126.91174 * 0.02562 * 24 23 21 43 43 H 1.07991 * 126.74822 * 180.12179 * 25 24 23 44 44 H 1.08995 * 110.36504 * 323.00709 * 28 8 6 45 45 H 1.08999 * 110.36761 * 85.21676 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4377 6 6 3.1815 -2.9880 -1.4382 7 8 3.4054 -3.5594 -0.3920 8 7 3.6062 -3.5205 -2.6012 9 6 3.4038 -2.9368 -3.9353 10 6 4.0819 -3.8767 -4.9543 11 1 3.3551 -4.5630 -5.3890 12 7 4.7553 -3.1057 -6.0023 13 6 4.0572 -2.6967 -7.1071 14 1 3.0103 -2.9428 -7.2060 15 6 4.6952 -1.9658 -8.0998 16 7 5.9712 -1.6662 -7.9795 17 14 3.7431 -1.4084 -9.6072 18 1 3.8327 -2.4496 -10.6623 19 1 2.3195 -1.1946 -9.2425 20 1 4.3201 -0.1379 -10.1153 21 6 5.1151 -4.6426 -4.0865 22 1 5.3369 -5.6201 -4.5148 23 7 6.3397 -3.8577 -3.9129 24 6 6.5439 -2.9041 -2.9747 25 6 7.8007 -2.4426 -3.1734 26 7 8.2946 -3.1219 -4.2146 27 7 7.4044 -3.9525 -4.6299 28 6 4.3517 -4.7841 -2.7461 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 3.1351 1.1060 0.0005 32 1 1.8001 1.8768 -0.8899 33 1 1.8001 1.8768 0.8900 34 1 1.4387 -2.0856 0.4334 35 1 2.9742 -1.1990 0.5889 36 1 3.0523 -0.9027 -1.8717 37 1 1.5167 -1.7893 -2.0272 38 1 3.8613 -1.9486 -3.9809 39 1 2.3377 -2.8643 -4.1503 40 1 5.6957 -2.8850 -5.9136 41 1 6.4171 -1.1558 -8.6735 42 1 5.8453 -2.5784 -2.2182 43 1 8.3042 -1.6743 -2.6056 44 1 5.0532 -4.9074 -1.9211 45 1 3.6632 -5.6282 -2.7871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129884356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:06:45 Heat of formation + Delta-G solvation = 104.996011 kcal Electronic energy + Delta-G solvation = -27631.855269 eV Core-core repulsion = 23880.929447 eV Total energy + Delta-G solvation = -3750.925822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.87041 -40.15011 -38.04218 -36.47864 -34.32881 -33.56172 -31.59133 -31.29174 -30.52471 -29.40263 -27.74814 -27.46340 -25.32601 -23.96130 -23.27011 -22.19186 -21.60990 -20.17007 -19.24973 -18.60778 -17.66108 -17.50784 -16.93452 -16.10738 -15.67802 -15.40022 -15.00686 -14.71500 -14.65723 -14.48537 -13.90357 -13.78047 -13.61327 -13.46119 -13.29564 -12.93790 -12.67392 -12.50569 -12.26446 -12.21344 -11.90000 -11.67742 -11.31352 -11.18960 -11.18149 -11.03910 -11.01112 -10.94133 -10.46153 -10.25048 -10.01013 -9.94680 -9.60982 -9.20486 -9.15335 -8.90059 -8.68732 -7.28014 -5.93125 -3.29890 1.99782 2.06094 2.56574 2.67467 2.90142 3.08789 3.32857 3.37459 3.40587 4.08886 4.40319 4.44339 4.62849 4.70247 4.86787 4.88039 4.91861 5.00501 5.08577 5.20832 5.28932 5.34508 5.41549 5.44851 5.45335 5.47134 5.50848 5.60048 5.65908 5.70612 5.76651 5.80718 5.85870 5.97817 6.01458 6.17088 6.18192 6.34628 6.44091 6.56794 6.68150 7.02147 7.42813 7.50661 8.07993 8.19553 9.01686 9.32652 9.80360 10.14750 11.26442 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.004464 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.674157 B = 6270.316635 C = 7760.900191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.069 4.069 5 C -0.130 4.130 6 C 0.529 3.471 7 O -0.548 6.548 8 N -0.618 5.618 9 C 0.066 3.934 10 C 0.167 3.833 11 H 0.090 0.910 12 N -0.708 5.708 13 C -0.267 4.267 14 H 0.075 0.925 15 C 0.002 3.998 16 N -0.914 5.914 17 Si 0.910 3.090 18 H -0.287 1.287 19 H -0.280 1.280 20 H -0.290 1.290 21 C 0.113 3.887 22 H 0.133 0.867 23 N -0.269 5.269 24 C -0.045 4.045 25 C -0.058 4.058 26 N -0.271 5.271 27 N -0.065 5.065 28 C 0.104 3.896 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.394 0.606 41 H 0.260 0.740 42 H 0.175 0.825 43 H 0.182 0.818 44 H 0.088 0.912 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 -0.237 15.227 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.123 4.123 3 C -0.179 4.179 4 C -0.107 4.107 5 C -0.170 4.170 6 C 0.318 3.682 7 O -0.426 6.426 8 N -0.354 5.354 9 C -0.060 4.060 10 C 0.052 3.948 11 H 0.108 0.892 12 N -0.350 5.350 13 C -0.398 4.398 14 H 0.093 0.907 15 C -0.197 4.197 16 N -0.559 5.559 17 Si 0.740 3.260 18 H -0.214 1.214 19 H -0.206 1.206 20 H -0.216 1.216 21 C 0.008 3.992 22 H 0.151 0.849 23 N -0.062 5.062 24 C -0.196 4.196 25 C -0.215 4.215 26 N -0.137 5.137 27 N -0.044 5.044 28 C -0.020 4.020 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.231 0.769 41 H 0.070 0.930 42 H 0.192 0.808 43 H 0.199 0.801 44 H 0.106 0.894 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.498 -1.159 14.465 16.334 hybrid contribution -0.965 1.130 -0.056 1.487 sum -8.462 -0.029 14.409 16.710 Atomic orbital electron populations 1.23674 0.95295 1.01831 1.02765 1.21786 0.95419 0.95720 0.99348 1.20886 1.00307 0.94667 1.02062 1.20451 1.00778 0.94248 0.95234 1.21605 1.01363 0.94867 0.99141 1.20449 0.79051 0.86765 0.81915 1.90700 1.57807 1.63266 1.30802 1.48675 1.56030 1.23327 1.07327 1.23521 1.01797 1.00021 0.80639 1.21571 0.92112 0.92603 0.88531 0.89204 1.42438 1.11226 1.62831 1.18467 1.19154 0.94052 1.29800 0.96770 0.90713 1.24849 0.95866 1.00156 0.98827 1.69708 1.09000 1.42369 1.34850 0.86182 0.78819 0.78035 0.82981 1.21358 1.20572 1.21587 1.23288 0.81502 0.96671 0.97714 0.84923 1.47148 1.12459 1.25983 1.20623 1.23407 1.00078 0.96844 0.99251 1.23461 0.94044 1.04422 0.99578 1.75104 1.22623 1.05700 1.10238 1.78392 0.90451 1.19554 1.16042 1.22452 0.95443 0.88240 0.95895 0.88536 0.88488 0.91785 0.91398 0.91636 0.90676 0.90477 0.88560 0.88701 0.90357 0.91030 0.76903 0.93008 0.80766 0.80057 0.89383 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.72 13.93 29.01 0.40 -1.31 16 2 C -0.12 -1.13 5.31 -101.07 -0.54 -1.66 16 3 C -0.12 -1.00 10.05 36.01 0.36 -0.64 16 4 C -0.07 -0.70 4.58 -27.89 -0.13 -0.83 16 5 C -0.13 -1.37 4.87 -27.89 -0.14 -1.51 16 6 C 0.53 6.82 7.61 -10.98 -0.08 6.73 16 7 O -0.55 -8.54 16.24 5.55 0.09 -8.45 16 8 N -0.62 -7.77 2.17 -170.53 -0.37 -8.14 16 9 C 0.07 0.95 5.86 -3.06 -0.02 0.93 16 10 C 0.17 2.75 3.46 -66.10 -0.23 2.52 16 11 H 0.09 1.38 8.12 -51.93 -0.42 0.96 16 12 N -0.71 -16.25 5.13 -51.65 -0.26 -16.51 16 13 C -0.27 -6.83 9.98 -15.06 -0.15 -6.98 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 16 N -0.91 -27.07 13.06 55.49 0.72 -26.34 16 17 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.11 1.61 4.06 -65.79 -0.27 1.35 16 22 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 23 N -0.27 -4.62 2.46 -52.68 -0.13 -4.75 16 24 C -0.04 -0.72 10.01 -17.04 -0.17 -0.89 16 25 C -0.06 -0.98 12.05 -17.73 -0.21 -1.19 16 26 N -0.27 -5.57 12.41 30.23 0.38 -5.20 16 27 N -0.06 -1.34 12.18 60.35 0.74 -0.61 16 28 C 0.10 1.23 5.89 -2.53 -0.01 1.21 16 29 H 0.10 0.74 8.05 -52.49 -0.42 0.32 16 30 H 0.10 0.80 7.99 -52.48 -0.42 0.38 16 31 H 0.06 0.51 8.00 -51.93 -0.42 0.10 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 35 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.39 10.08 5.90 -40.82 -0.24 9.84 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 42 H 0.18 2.45 6.78 -52.49 -0.36 2.09 16 43 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 44 H 0.09 1.08 7.77 -51.93 -0.40 0.68 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -32.74 375.54 -6.34 -39.08 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -6.86 Total: 11.33 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.28 Total: -2.31 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 1.07 Total: -61.55 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.74 -6.34 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129884356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.073 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds