Wall clock time and date at job start Sat Apr 11 2020 00:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 119.99701 * 2 1 4 4 C 1.50697 * 120.00158 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47286 * 94.99949 * 4 2 1 6 6 C 1.50701 * 109.47111 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99974 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00236 * 179.97438 * 6 5 4 9 9 C 1.47020 * 125.64468 * 0.02562 * 8 6 5 10 10 C 1.54324 * 107.27181 * 178.90323 * 9 8 6 11 11 H 1.09006 * 110.72009 * 96.34264 * 10 9 8 12 12 N 1.46496 * 110.72507 * 219.44845 * 10 9 8 13 13 C 1.36945 * 119.99718 * 273.54571 * 12 10 9 14 14 H 1.07997 * 119.99756 * 359.97438 * 13 12 10 15 15 C 1.38805 * 119.99878 * 179.97438 * 13 12 10 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00277 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00228 * 17 15 13 20 20 H 1.48499 * 109.46981 * 150.00382 * 17 15 13 21 21 C 1.55158 * 102.93996 * 337.80956 * 10 9 8 22 22 H 1.09002 * 111.00742 * 153.57117 * 21 10 9 23 23 N 1.46495 * 111.00454 * 277.42160 * 21 10 9 24 24 C 1.35322 * 125.86254 * 84.71951 * 23 21 10 25 25 C 1.35359 * 106.17129 * 179.90490 * 24 23 21 26 26 N 1.33770 * 106.49602 * 0.35057 * 25 24 23 27 27 N 1.28639 * 108.88505 * 359.77245 * 26 25 24 28 28 C 1.47424 * 125.65023 * 179.97438 * 8 6 5 29 29 H 1.07997 * 120.00271 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99599 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46929 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47216 * 300.00454 * 3 2 1 33 33 H 1.09004 * 109.47067 * 59.99807 * 3 2 1 34 34 H 1.09000 * 109.47193 * 334.99550 * 4 2 1 35 35 H 1.09001 * 109.46683 * 214.99899 * 4 2 1 36 36 H 1.09000 * 109.47330 * 59.99686 * 5 4 2 37 37 H 1.09001 * 109.47219 * 299.99622 * 5 4 2 38 38 H 1.08998 * 109.88325 * 59.48645 * 9 8 6 39 39 H 1.08999 * 109.88515 * 298.32098 * 9 8 6 40 40 H 0.96996 * 120.00499 * 93.54301 * 12 10 9 41 41 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 42 42 H 1.07996 * 126.91174 * 0.02562 * 24 23 21 43 43 H 1.07991 * 126.74822 * 180.12179 * 25 24 23 44 44 H 1.08995 * 110.36504 * 323.00709 * 28 8 6 45 45 H 1.08999 * 110.36761 * 85.21676 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 6 2.4274 -1.6832 -1.4377 6 6 3.1815 -2.9880 -1.4382 7 8 3.4054 -3.5594 -0.3920 8 7 3.6062 -3.5205 -2.6012 9 6 3.4038 -2.9368 -3.9353 10 6 4.0819 -3.8767 -4.9543 11 1 3.3551 -4.5630 -5.3890 12 7 4.7553 -3.1057 -6.0023 13 6 4.0572 -2.6967 -7.1071 14 1 3.0103 -2.9428 -7.2060 15 6 4.6952 -1.9658 -8.0998 16 7 5.9712 -1.6662 -7.9795 17 14 3.7431 -1.4084 -9.6072 18 1 3.8327 -2.4496 -10.6623 19 1 2.3195 -1.1946 -9.2425 20 1 4.3201 -0.1379 -10.1153 21 6 5.1151 -4.6426 -4.0865 22 1 5.3369 -5.6201 -4.5148 23 7 6.3397 -3.8577 -3.9129 24 6 6.5439 -2.9041 -2.9747 25 6 7.8007 -2.4426 -3.1734 26 7 8.2946 -3.1219 -4.2146 27 7 7.4044 -3.9525 -4.6299 28 6 4.3517 -4.7841 -2.7461 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 3.1351 1.1060 0.0005 32 1 1.8001 1.8768 -0.8899 33 1 1.8001 1.8768 0.8900 34 1 1.4387 -2.0856 0.4334 35 1 2.9742 -1.1990 0.5889 36 1 3.0523 -0.9027 -1.8717 37 1 1.5167 -1.7893 -2.0272 38 1 3.8613 -1.9486 -3.9809 39 1 2.3377 -2.8643 -4.1503 40 1 5.6957 -2.8850 -5.9136 41 1 6.4171 -1.1558 -8.6735 42 1 5.8453 -2.5784 -2.2182 43 1 8.3042 -1.6743 -2.6056 44 1 5.0532 -4.9074 -1.9211 45 1 3.6632 -5.6282 -2.7871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129884356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:06:45 Heat of formation + Delta-G solvation = 84.461355 kcal Electronic energy + Delta-G solvation = -27632.745718 eV Core-core repulsion = 23880.929447 eV Total energy + Delta-G solvation = -3751.816272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.23375 -41.25323 -39.21052 -37.25935 -35.96423 -34.89503 -33.09788 -32.42950 -31.87107 -30.62486 -29.13898 -28.10134 -26.42524 -25.63446 -24.37374 -23.58387 -22.92811 -21.49156 -20.32832 -19.42711 -19.28553 -18.77381 -18.04206 -17.13377 -17.09884 -16.68945 -16.30554 -15.94453 -15.83106 -15.49402 -15.25295 -15.10881 -14.75945 -14.65757 -14.24336 -14.11575 -13.71527 -13.67013 -13.37883 -13.18015 -12.92749 -12.87208 -12.77304 -12.59664 -12.54373 -12.42595 -12.09474 -11.94977 -11.90548 -11.81791 -11.77156 -11.22123 -10.95822 -10.91301 -10.27266 -9.88630 -9.77548 -9.15861 -7.95601 -5.30286 0.71173 1.30537 1.43117 1.48691 1.49963 1.55103 1.58040 1.69748 1.87383 2.53214 2.98930 3.25241 3.48010 3.58082 3.66447 3.69964 3.97388 4.03679 4.07824 4.10620 4.18325 4.23026 4.28701 4.32330 4.35688 4.50394 4.57437 4.65869 4.70691 4.82696 4.86070 4.90420 4.97398 5.01878 5.09435 5.11303 5.16492 5.22475 5.28254 5.50748 5.72568 5.77189 6.00336 6.20419 6.36626 7.05141 7.29664 7.60880 7.98415 8.19564 9.25773 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.004464 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.674157 B = 6270.316635 C = 7760.900191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.125 4.125 6 C 0.532 3.468 7 O -0.573 6.573 8 N -0.614 5.614 9 C 0.085 3.915 10 C 0.157 3.843 11 H 0.110 0.890 12 N -0.729 5.729 13 C -0.248 4.248 14 H 0.092 0.908 15 C -0.068 4.068 16 N -0.964 5.964 17 Si 0.972 3.028 18 H -0.290 1.290 19 H -0.260 1.260 20 H -0.304 1.304 21 C 0.109 3.891 22 H 0.147 0.853 23 N -0.263 5.263 24 C -0.036 4.036 25 C -0.064 4.064 26 N -0.309 5.309 27 N -0.107 5.107 28 C 0.112 3.888 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.091 0.909 40 H 0.379 0.621 41 H 0.249 0.751 42 H 0.196 0.804 43 H 0.214 0.786 44 H 0.088 0.912 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 -0.478 16.533 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.134 4.134 3 C -0.179 4.179 4 C -0.102 4.102 5 C -0.165 4.165 6 C 0.323 3.677 7 O -0.453 6.453 8 N -0.348 5.348 9 C -0.041 4.041 10 C 0.045 3.955 11 H 0.128 0.872 12 N -0.369 5.369 13 C -0.380 4.380 14 H 0.110 0.890 15 C -0.261 4.261 16 N -0.613 5.613 17 Si 0.801 3.199 18 H -0.217 1.217 19 H -0.185 1.185 20 H -0.231 1.231 21 C 0.006 3.994 22 H 0.165 0.835 23 N -0.057 5.057 24 C -0.188 4.188 25 C -0.222 4.222 26 N -0.174 5.174 27 N -0.085 5.085 28 C -0.011 4.011 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.213 0.787 41 H 0.057 0.943 42 H 0.212 0.788 43 H 0.231 0.769 44 H 0.106 0.894 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.139 -1.449 15.800 18.829 hybrid contribution -0.241 1.138 -0.314 1.205 sum -10.380 -0.311 15.485 18.645 Atomic orbital electron populations 1.23828 0.95190 1.02528 1.01735 1.21814 0.95681 0.95590 1.00282 1.20899 1.00092 0.94351 1.02596 1.20371 1.00392 0.94641 0.94775 1.21626 1.01578 0.93605 0.99684 1.20781 0.78618 0.87077 0.81270 1.90700 1.58899 1.64110 1.31554 1.48614 1.56007 1.23523 1.06702 1.23056 1.02264 0.98085 0.80684 1.21899 0.92860 0.92745 0.88016 0.87199 1.42615 1.10857 1.63847 1.19602 1.19657 0.94643 1.26994 0.96663 0.88979 1.25625 0.96604 1.01870 1.02049 1.69895 1.10982 1.44796 1.35653 0.85177 0.78427 0.76616 0.79680 1.21725 1.18457 1.23088 1.23534 0.80338 0.96549 0.99000 0.83550 1.47367 1.12393 1.25977 1.19984 1.23732 1.00070 0.96018 0.98973 1.24100 0.94622 1.04641 0.98843 1.75039 1.23751 1.06786 1.11829 1.78316 0.91764 1.20888 1.17581 1.22554 0.95644 0.88882 0.94061 0.87525 0.88180 0.91985 0.91165 0.90813 0.91329 0.91326 0.88129 0.87459 0.92451 0.89084 0.78704 0.94262 0.78757 0.76941 0.89416 0.85262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.94 13.93 67.78 0.94 -2.00 16 2 C -0.13 -2.19 5.31 -16.49 -0.09 -2.28 16 3 C -0.12 -1.78 10.05 71.24 0.72 -1.06 16 4 C -0.06 -1.18 4.58 29.84 0.14 -1.04 16 5 C -0.13 -2.33 4.87 29.85 0.15 -2.19 16 6 C 0.53 12.29 7.61 87.66 0.67 12.96 16 7 O -0.57 -16.55 16.24 -3.04 -0.05 -16.60 16 8 N -0.61 -13.57 2.17 -811.82 -1.76 -15.33 16 9 C 0.09 2.18 5.86 86.73 0.51 2.69 16 10 C 0.16 4.83 3.46 46.18 0.16 4.99 16 11 H 0.11 2.99 8.12 -2.38 -0.02 2.97 16 12 N -0.73 -32.91 5.13 -317.33 -1.63 -34.53 16 13 C -0.25 -12.42 9.98 84.03 0.84 -11.58 16 14 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 15 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 16 N -0.96 -58.79 13.06 21.65 0.28 -58.51 16 17 Si 0.97 43.99 29.55 68.60 2.03 46.02 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 21 C 0.11 2.91 4.06 46.38 0.19 3.10 16 22 H 0.15 3.49 8.14 -2.39 -0.02 3.47 16 23 N -0.26 -8.88 2.46 -320.59 -0.79 -9.67 16 24 C -0.04 -1.12 10.01 83.49 0.84 -0.28 16 25 C -0.06 -2.14 12.05 83.73 1.01 -1.13 16 26 N -0.31 -12.97 12.41 -58.26 -0.72 -13.70 16 27 N -0.11 -4.49 12.18 37.02 0.45 -4.04 16 28 C 0.11 2.29 5.89 86.85 0.51 2.80 16 29 H 0.11 1.37 8.05 -2.91 -0.02 1.35 16 30 H 0.10 1.42 7.99 -2.91 -0.02 1.39 16 31 H 0.06 0.91 8.00 -2.39 -0.02 0.89 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.07 1.35 7.94 -2.39 -0.02 1.33 16 35 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.77 8.03 -2.39 -0.02 1.75 16 39 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.38 19.59 5.90 -92.71 -0.55 19.04 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.20 5.07 6.78 -2.91 -0.02 5.05 16 43 H 0.21 5.30 8.06 -2.91 -0.02 5.27 16 44 H 0.09 1.90 7.77 -2.39 -0.02 1.88 16 45 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -72.54 375.54 5.29 -67.25 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: 0.44 Total: 37.41 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 7.04 Total: 1.71 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -4.17 Total: -135.78 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.05 Total: -16.60 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.54 5.29 -67.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129884356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.709 kcal (2) G-P(sol) polarization free energy of solvation -72.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds