Wall clock time and date at job start Sat Apr 11 2020 00:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00338 * 2 1 4 4 H 1.48508 * 109.46878 * 269.99979 * 3 2 1 5 5 H 1.48496 * 109.47677 * 149.99908 * 3 2 1 6 6 H 1.48504 * 109.47066 * 29.99247 * 3 2 1 7 7 C 1.38813 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00232 * 326.15067 * 7 2 1 9 9 N 1.36942 * 119.99922 * 146.14824 * 7 2 1 10 10 C 1.47421 * 125.65105 * 4.08538 * 9 7 2 11 11 C 1.54906 * 104.83454 * 204.09436 * 10 9 7 12 12 C 1.55159 * 101.58174 * 322.98994 * 11 10 9 13 13 H 1.08996 * 110.71699 * 276.96612 * 12 11 10 14 14 N 1.46895 * 110.71992 * 153.86401 * 12 11 10 15 15 C 1.46892 * 111.00156 * 179.62399 * 14 12 11 16 16 C 1.53237 * 109.34138 * 172.74963 * 15 14 12 17 17 N 1.47077 * 108.52552 * 53.83114 * 16 15 14 18 18 C 1.34774 * 120.88374 * 128.79182 * 17 16 15 19 19 O 1.21615 * 119.99676 * 185.83100 * 18 17 16 20 20 C 1.47093 * 120.00022 * 5.82960 * 18 17 16 21 21 C 1.32997 * 119.99879 * 185.38709 * 20 18 17 22 22 C 1.50706 * 119.99944 * 179.97438 * 21 20 18 23 23 C 1.52998 * 117.49777 * 188.61924 * 22 21 20 24 24 C 1.52996 * 60.00149 * 252.51427 * 23 22 21 25 25 C 1.47085 * 118.23242 * 308.81768 * 17 16 15 26 26 C 1.46905 * 110.99958 * 55.32092 * 14 12 11 27 27 C 1.47020 * 125.64643 * 183.78169 * 9 7 2 28 28 H 0.96995 * 120.00327 * 185.00728 * 1 2 3 29 29 H 1.09003 * 110.36343 * 322.93722 * 10 9 7 30 30 H 1.09000 * 110.36174 * 85.25090 * 10 9 7 31 31 H 1.09001 * 111.00552 * 81.06630 * 11 10 9 32 32 H 1.09003 * 111.00446 * 204.91698 * 11 10 9 33 33 H 1.09004 * 109.49103 * 292.70717 * 15 14 12 34 34 H 1.08998 * 109.49447 * 52.78588 * 15 14 12 35 35 H 1.09004 * 109.62681 * 294.11374 * 16 15 14 36 36 H 1.09009 * 109.63005 * 173.53922 * 16 15 14 37 37 H 1.07999 * 120.00076 * 5.39145 * 20 18 17 38 38 H 1.07999 * 120.00046 * 0.02562 * 21 20 18 39 39 H 1.08998 * 115.54771 * 334.33369 * 22 21 20 40 40 H 1.08999 * 117.49830 * 0.02562 * 23 22 21 41 41 H 1.09005 * 117.49503 * 145.01973 * 23 22 21 42 42 H 1.08995 * 117.49932 * 252.51071 * 24 23 22 43 43 H 1.09002 * 117.49851 * 107.49302 * 24 23 22 44 44 H 1.08996 * 109.62661 * 291.47345 * 25 17 16 45 45 H 1.08996 * 109.62609 * 170.89268 * 25 17 16 46 46 H 1.09001 * 109.49002 * 307.21398 * 26 14 12 47 47 H 1.09008 * 109.48853 * 67.29096 * 26 14 12 48 48 H 1.09006 * 109.88318 * 298.39223 * 27 9 7 49 49 H 1.09001 * 109.88523 * 59.55630 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 3.5478 1.4402 0.7000 6 1 1.4477 2.6527 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 1.6075 -2.0580 0.5219 9 7 3.2055 -1.3030 -0.6601 10 6 3.9090 -0.1984 -1.3370 11 6 4.8014 -0.8881 -2.3988 12 6 5.2466 -2.1700 -1.6465 13 1 6.0998 -1.9615 -1.0010 14 7 5.5652 -3.2452 -2.5953 15 6 5.9961 -4.4593 -1.8897 16 6 6.1437 -5.6057 -2.8958 17 7 7.0369 -5.1654 -3.9781 18 6 8.0935 -5.9145 -4.3509 19 8 8.8817 -5.4876 -5.1729 20 6 8.2933 -7.2482 -3.7636 21 6 9.3908 -7.9430 -4.0494 22 6 9.5958 -9.3092 -3.4472 23 6 10.9598 -9.9724 -3.6484 24 6 9.7375 -10.4909 -4.4087 25 6 6.7468 -3.8856 -4.6425 26 6 6.5755 -2.8070 -3.5676 27 6 4.0029 -2.5295 -0.8063 28 1 -0.4850 -0.8368 0.0733 29 1 3.1936 0.4687 -1.8180 30 1 4.5234 0.3528 -0.6251 31 1 4.2259 -1.1381 -3.2901 32 1 5.6597 -0.2656 -2.6518 33 1 6.9544 -4.2766 -1.4033 34 1 5.2523 -4.7274 -1.1394 35 1 5.1668 -5.8595 -3.3075 36 1 6.5721 -6.4762 -2.3988 37 1 7.5488 -7.6633 -3.1004 38 1 10.1354 -7.5277 -4.7123 39 1 9.0833 -9.4880 -2.5020 40 1 11.7090 -9.4204 -4.2159 41 1 11.3451 -10.5877 -2.8353 42 1 9.3187 -11.4473 -4.0959 43 1 9.6825 -10.2802 -5.4767 44 1 5.8280 -3.9740 -5.2221 45 1 7.5739 -3.6188 -5.3003 46 1 6.2517 -1.8766 -4.0342 47 1 7.5257 -2.6473 -3.0578 48 1 4.3084 -2.8922 0.1752 49 1 3.4185 -3.2926 -1.3203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046013276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:07:46 Heat of formation + Delta-G solvation = 58.167725 kcal Electronic energy + Delta-G solvation = -26810.523738 eV Core-core repulsion = 23161.107632 eV Total energy + Delta-G solvation = -3649.416106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42505 -38.86038 -37.96638 -36.85310 -34.37653 -32.98213 -32.18742 -31.32877 -29.56509 -28.42566 -26.58231 -24.72028 -24.00298 -23.06047 -22.86320 -21.67161 -20.77720 -20.23953 -19.63514 -18.88009 -17.68732 -17.37299 -16.47444 -16.04741 -15.55303 -15.46208 -15.20228 -14.95954 -14.83175 -14.36645 -13.95000 -13.74406 -13.51589 -13.20426 -13.08141 -13.04227 -12.45023 -12.33143 -12.13827 -11.98731 -11.87942 -11.62507 -11.58208 -11.46182 -11.27174 -11.10002 -10.94561 -10.85961 -10.72061 -10.37445 -10.00232 -9.87807 -9.71492 -9.52220 -9.29890 -8.88728 -8.29064 -8.26039 -7.03650 -6.37497 -3.08160 0.99683 2.76201 2.99760 3.41709 3.46436 3.53825 3.68414 3.80923 4.02175 4.36801 4.45814 4.50109 4.61556 4.68409 4.71266 4.79015 4.90576 4.95921 5.02469 5.09736 5.14642 5.19787 5.23362 5.34544 5.37169 5.42490 5.51354 5.56863 5.58947 5.60586 5.61946 5.65362 5.72290 5.89851 5.91020 5.94725 6.07080 6.16367 6.24325 6.32493 6.48187 6.53310 6.59099 6.83275 7.06963 7.16461 7.29300 7.75560 7.97505 8.36086 9.06564 9.65547 10.32138 11.14158 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.031339 B = 0.002276 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.229654 B =12299.458064 C =12798.914749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.019 4.019 3 Si 1.058 2.942 4 H -0.294 1.294 5 H -0.289 1.289 6 H -0.299 1.299 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.122 4.122 12 C 0.072 3.928 13 H 0.046 0.954 14 N -0.525 5.525 15 C 0.040 3.960 16 C 0.112 3.888 17 N -0.608 5.608 18 C 0.549 3.451 19 O -0.552 6.552 20 C -0.215 4.215 21 C -0.034 4.034 22 C -0.142 4.142 23 C -0.171 4.171 24 C -0.165 4.165 25 C 0.117 3.883 26 C 0.041 3.959 27 C 0.151 3.849 28 H 0.264 0.736 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.035 0.965 48 H 0.019 0.981 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.994 -17.710 -8.039 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.220 4.220 3 Si 0.891 3.109 4 H -0.223 1.223 5 H -0.216 1.216 6 H -0.227 1.227 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.335 5.335 10 C -0.022 4.022 11 C -0.160 4.160 12 C -0.037 4.037 13 H 0.064 0.936 14 N -0.251 5.251 15 C -0.089 4.089 16 C -0.011 4.011 17 N -0.341 5.341 18 C 0.340 3.660 19 O -0.432 6.432 20 C -0.235 4.235 21 C -0.054 4.054 22 C -0.160 4.160 23 C -0.208 4.208 24 C -0.202 4.202 25 C -0.005 4.005 26 C -0.088 4.088 27 C 0.025 3.975 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.053 0.947 48 H 0.036 0.964 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 19.669 -15.957 -8.712 26.784 hybrid contribution 0.851 -1.431 0.832 1.861 sum 20.520 -17.388 -7.880 28.027 Atomic orbital electron populations 1.70916 1.06029 1.30203 1.47705 1.25645 0.95968 1.00930 0.99444 0.83957 0.74641 0.76411 0.75904 1.22255 1.21621 1.22715 1.19891 0.94283 0.99288 1.32979 0.90479 1.44739 1.22520 1.03048 1.63146 1.21963 0.94396 0.92646 0.93214 1.22825 0.99064 0.94941 0.99191 1.22689 0.97354 0.90774 0.92856 0.93604 1.61964 1.41433 1.04716 1.16942 1.22479 0.99810 0.90707 0.95930 1.21958 0.94554 0.96878 0.87757 1.48064 1.27659 1.21821 1.36541 1.18546 0.80287 0.85435 0.81754 1.90763 1.44189 1.73251 1.35013 1.22593 1.00480 0.95288 1.05184 1.23068 0.95962 0.92300 0.94026 1.21345 1.02174 0.91408 1.01081 1.23024 0.90885 1.03467 1.03413 1.22989 1.01984 0.97035 0.98224 1.21742 1.02077 0.81878 0.94840 1.22485 0.93674 0.98423 0.94180 1.21184 0.90112 0.90956 0.95246 0.92583 0.91842 0.95673 0.90146 0.91911 0.94569 0.88891 0.90146 0.89290 0.85228 0.85533 0.86632 0.88278 0.88185 0.88089 0.88306 0.90487 0.88779 0.88967 0.94667 0.96352 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.40 13.70 55.49 0.76 -27.64 16 2 C -0.02 -0.55 5.40 -17.43 -0.09 -0.64 16 3 Si 1.06 26.66 24.84 -169.99 -4.22 22.43 16 4 H -0.29 -6.99 6.32 56.52 0.36 -6.63 16 5 H -0.29 -6.96 6.38 56.52 0.36 -6.60 16 6 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 7 C -0.34 -9.74 10.39 -15.06 -0.16 -9.90 16 8 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 9 N -0.61 -15.08 3.37 -170.06 -0.57 -15.65 16 10 C 0.10 2.27 4.76 -2.53 -0.01 2.26 16 11 C -0.12 -2.07 5.13 -24.58 -0.13 -2.20 16 12 C 0.07 1.16 2.64 -65.87 -0.17 0.99 16 13 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 14 N -0.53 -7.18 4.45 -224.15 -1.00 -8.18 16 15 C 0.04 0.46 5.51 -3.71 -0.02 0.43 16 16 C 0.11 1.07 6.45 -3.60 -0.02 1.05 16 17 N -0.61 -6.92 3.01 -173.86 -0.52 -7.44 16 18 C 0.55 6.73 7.64 -12.67 -0.10 6.63 16 19 O -0.55 -8.55 15.69 5.26 0.08 -8.47 16 20 C -0.21 -1.96 8.87 -37.81 -0.34 -2.29 16 21 C -0.03 -0.28 9.24 -36.12 -0.33 -0.62 16 22 C -0.14 -0.88 6.01 -91.77 -0.55 -1.43 16 23 C -0.17 -0.89 10.23 -26.73 -0.27 -1.17 16 24 C -0.17 -0.88 10.23 -26.73 -0.27 -1.15 16 25 C 0.12 1.36 6.61 -3.60 -0.02 1.33 16 26 C 0.04 0.50 5.42 -3.70 -0.02 0.48 16 27 C 0.15 3.05 5.84 -3.06 -0.02 3.04 16 28 H 0.26 8.15 8.73 -40.82 -0.36 7.80 16 29 H 0.06 1.50 4.91 -51.93 -0.25 1.25 16 30 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 31 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 32 H 0.06 0.90 7.95 -51.93 -0.41 0.49 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 1.07 7.15 -51.93 -0.37 0.70 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.64 5.56 -51.92 -0.29 0.35 16 37 H 0.13 0.89 6.14 -52.49 -0.32 0.57 16 38 H 0.13 1.19 7.50 -52.49 -0.39 0.79 16 39 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.13 7.04 -51.93 -0.37 0.76 16 46 H 0.09 1.07 6.60 -51.93 -0.34 0.73 16 47 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.04 0.87 7.99 -51.93 -0.41 0.45 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -33.87 377.13 -10.56 -44.43 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.24 Total: -1.98 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.53 Total: -3.19 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -1.33 Total: -58.90 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.47 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -4.22 Total: 22.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.87 -10.56 -44.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046013276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.598 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds