Wall clock time and date at job start Sat Apr 11 2020 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99731 * 2 1 4 4 H 1.48501 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47371 * 59.99223 * 3 2 1 6 6 H 1.48504 * 109.47044 * 299.99263 * 3 2 1 7 7 C 1.38810 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00374 * 325.64045 * 7 2 1 9 9 N 1.36936 * 119.99669 * 145.64335 * 7 2 1 10 10 C 1.47022 * 125.65041 * 333.89529 * 9 7 2 11 11 C 1.54325 * 107.27534 * 181.02562 * 10 9 7 12 12 C 1.55157 * 102.93717 * 22.19885 * 11 10 9 13 13 H 1.09000 * 111.00790 * 82.61152 * 12 11 10 14 14 N 1.46903 * 111.00133 * 206.42352 * 12 11 10 15 15 C 1.46895 * 111.00008 * 304.30069 * 14 12 11 16 16 C 1.53239 * 109.33954 * 172.74845 * 15 14 12 17 17 N 1.47075 * 108.52230 * 53.83180 * 16 15 14 18 18 C 1.34780 * 120.88269 * 128.79330 * 17 16 15 19 19 O 1.21278 * 119.99970 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00020 * 0.02562 * 18 17 16 21 21 H 1.08996 * 115.54720 * 34.28279 * 20 18 17 22 22 C 1.53001 * 117.50124 * 248.60915 * 20 18 17 23 23 C 1.52997 * 117.49889 * 179.97438 * 20 18 17 24 24 C 1.52995 * 138.58957 * 336.60366 * 23 20 18 25 25 C 1.52990 * 138.58638 * 238.38217 * 23 20 18 26 26 C 1.47076 * 118.23669 * 308.81325 * 17 16 15 27 27 C 1.46902 * 110.99788 * 179.97438 * 14 12 11 28 28 C 1.47426 * 125.64969 * 153.59750 * 9 7 2 29 29 H 0.97004 * 119.99870 * 185.06075 * 1 2 3 30 30 H 1.08999 * 109.88375 * 300.45180 * 10 9 7 31 31 H 1.09003 * 109.88003 * 61.61302 * 10 9 7 32 32 H 1.08993 * 110.71828 * 140.55893 * 11 10 9 33 33 H 1.08994 * 110.71919 * 263.83667 * 11 10 9 34 34 H 1.09001 * 109.49279 * 292.70835 * 15 14 12 35 35 H 1.08996 * 109.49631 * 52.78893 * 15 14 12 36 36 H 1.08997 * 109.62950 * 294.11546 * 16 15 14 37 37 H 1.09004 * 109.78686 * 173.63738 * 16 15 14 38 38 H 1.08997 * 117.49779 * 0.02562 * 22 20 18 39 39 H 1.09001 * 117.49924 * 144.99840 * 22 20 18 40 40 H 1.09003 * 117.49425 * 336.59343 * 24 23 20 41 41 H 1.08996 * 117.49611 * 121.61391 * 24 23 20 42 42 H 1.09002 * 117.49448 * 238.37942 * 25 23 20 43 43 H 1.08990 * 117.50460 * 23.40810 * 25 23 20 44 44 H 1.08997 * 109.63178 * 291.47612 * 26 17 16 45 45 H 1.09000 * 109.79076 * 170.98876 * 26 17 16 46 46 H 1.08993 * 109.49431 * 307.21049 * 27 14 12 47 47 H 1.09005 * 109.49225 * 67.27004 * 27 14 12 48 48 H 1.08995 * 110.36621 * 274.74374 * 28 9 7 49 49 H 1.09003 * 110.36364 * 37.06655 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8912 2.3966 1.2124 6 1 1.8914 2.3964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 1.6117 -2.0556 0.5288 9 7 3.2004 -1.3058 -0.6687 10 6 3.6072 -0.4933 -1.8245 11 6 5.0068 -0.9791 -2.2564 12 6 5.0706 -2.4161 -1.6748 13 1 4.5755 -3.1275 -2.3358 14 7 6.4597 -2.8190 -1.4179 15 6 7.2758 -2.6995 -2.6335 16 6 8.7463 -2.9524 -2.2843 17 7 8.8464 -4.2466 -1.5928 18 6 9.7272 -5.1821 -1.9998 19 8 9.7959 -6.2441 -1.4181 20 6 10.6266 -4.9085 -3.1776 21 1 10.9561 -3.8753 -3.2875 22 6 10.3798 -5.7111 -4.4566 23 6 11.6052 -6.0099 -3.5901 24 6 12.3004 -7.2206 -2.9643 25 6 13.1135 -6.1992 -3.7622 26 6 7.9595 -4.4931 -0.4458 27 6 6.5199 -4.1793 -0.8667 28 6 4.2887 -2.2464 -0.3457 29 1 -0.4850 -0.8368 0.0741 30 1 2.8988 -0.6301 -2.6415 31 1 3.6509 0.5584 -1.5413 32 1 5.0899 -0.9988 -3.3430 33 1 5.7843 -0.3517 -1.8204 34 1 6.9447 -3.4341 -3.3675 35 1 7.1675 -1.6970 -3.0472 36 1 9.1092 -2.1591 -1.6309 37 1 9.3430 -2.9773 -3.1962 38 1 9.5665 -6.4367 -4.4463 39 1 10.5468 -5.2059 -5.4079 40 1 12.4231 -7.2261 -1.8812 41 1 12.1258 -8.1938 -3.4229 42 1 13.4739 -6.5007 -4.7458 43 1 13.7713 -5.5330 -3.2042 44 1 8.2467 -3.8479 0.3845 45 1 8.0325 -5.5369 -0.1405 46 1 5.8635 -4.2497 0.0006 47 1 6.1988 -4.8936 -1.6249 48 1 4.9346 -1.8285 0.4264 49 1 3.8794 -3.2034 -0.0220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046066154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:08:10 Heat of formation + Delta-G solvation = 52.446060 kcal Electronic energy + Delta-G solvation = -27288.060283 eV Core-core repulsion = 23638.396068 eV Total energy + Delta-G solvation = -3649.664216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48608 -40.17580 -38.74673 -37.88940 -35.65268 -34.27441 -33.61581 -32.32559 -31.15268 -29.83069 -27.66223 -25.94725 -24.93690 -24.29905 -23.28866 -22.38944 -22.02512 -21.28575 -20.58699 -19.57053 -19.40236 -18.49613 -17.27437 -16.93623 -16.90699 -16.34720 -15.98094 -15.93984 -15.87664 -15.62739 -15.39167 -15.15179 -15.07774 -14.45337 -14.40646 -13.94458 -13.66805 -13.48579 -13.41541 -13.05863 -12.74548 -12.69991 -12.61150 -12.45344 -12.36229 -12.20386 -12.11549 -11.83162 -11.67493 -11.57349 -11.18939 -11.14330 -11.05555 -10.94363 -10.70996 -10.45291 -9.85965 -9.32291 -9.17649 -8.57191 -5.49838 1.40556 1.44155 1.54523 1.74372 1.82364 2.51958 2.65627 2.72344 2.81520 3.00625 3.30787 3.51754 3.53201 3.64199 3.80221 3.88728 3.93398 4.01876 4.08252 4.14898 4.20665 4.28383 4.38747 4.42194 4.45366 4.52493 4.60069 4.61181 4.71963 4.74864 4.77397 4.80489 4.81520 4.83759 4.88279 4.95986 4.99992 5.01584 5.02521 5.06763 5.15525 5.26540 5.29326 5.41061 5.70498 5.98063 6.05511 6.16416 6.38002 6.82627 7.10457 7.50294 8.21268 8.75444 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.036712 B = 0.002440 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.511451 B =11474.431775 C =11775.712369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.060 4.060 3 Si 1.098 2.902 4 H -0.255 1.255 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.338 4.338 8 H 0.027 0.973 9 N -0.624 5.624 10 C 0.114 3.886 11 C -0.105 4.105 12 C 0.087 3.913 13 H 0.043 0.957 14 N -0.527 5.527 15 C 0.038 3.962 16 C 0.114 3.886 17 N -0.609 5.609 18 C 0.536 3.464 19 O -0.583 6.583 20 C -0.144 4.144 21 H 0.154 0.846 22 C -0.087 4.087 23 C -0.226 4.226 24 C -0.136 4.136 25 C -0.104 4.104 26 C 0.124 3.876 27 C 0.048 3.952 28 C 0.139 3.861 29 H 0.250 0.750 30 H 0.021 0.979 31 H 0.028 0.972 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.036 0.964 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.028 0.972 48 H 0.031 0.969 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.784 -7.385 -12.355 32.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.257 4.257 3 Si 0.922 3.078 4 H -0.180 1.180 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.467 4.467 8 H 0.045 0.955 9 N -0.352 5.352 10 C -0.011 4.011 11 C -0.143 4.143 12 C -0.022 4.022 13 H 0.061 0.939 14 N -0.252 5.252 15 C -0.090 4.090 16 C -0.008 4.008 17 N -0.342 5.342 18 C 0.326 3.674 19 O -0.463 6.463 20 C -0.165 4.165 21 H 0.171 0.829 22 C -0.124 4.124 23 C -0.227 4.227 24 C -0.173 4.173 25 C -0.140 4.140 26 C 0.001 3.999 27 C -0.081 4.081 28 C 0.014 3.986 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.155 0.845 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.046 0.954 48 H 0.049 0.951 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 28.741 -6.016 -11.714 31.614 hybrid contribution -1.446 -2.624 0.376 3.019 sum 27.295 -8.639 -11.339 30.794 Atomic orbital electron populations 1.71048 1.07530 1.29640 1.49363 1.27323 0.96118 1.04627 0.97672 0.83407 0.75611 0.71962 0.76786 1.17966 1.22443 1.20698 1.19614 0.97219 0.96002 1.33855 0.95496 1.44735 1.15161 1.43090 1.32177 1.21795 0.95404 0.94930 0.88983 1.22595 0.95454 0.94753 1.01465 1.22561 0.87623 0.96442 0.95609 0.93937 1.61907 1.09187 1.23918 1.30197 1.22625 0.92851 1.03272 0.90282 1.22116 0.96123 0.83687 0.98893 1.48239 1.37028 1.16932 1.31975 1.20321 0.80054 0.82636 0.84436 1.90663 1.70491 1.26682 1.58445 1.22052 1.00172 0.99193 0.95040 0.82866 1.22745 0.96109 0.99970 0.93610 1.21440 0.93858 1.01182 1.06205 1.22592 1.02083 0.93507 0.99092 1.22849 0.88656 1.00291 1.02228 1.21557 0.87770 1.02018 0.88589 1.22382 0.96974 0.88830 0.99864 1.21682 0.88950 0.92504 0.95485 0.94011 0.96087 0.95467 0.88253 0.89033 0.94593 0.87108 0.89464 0.86145 0.89648 0.84473 0.90152 0.88355 0.86378 0.87668 0.90176 0.90131 0.90098 0.95351 0.95099 0.95908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.70 21.65 0.30 -59.59 16 2 C -0.06 -3.60 5.29 84.86 0.45 -3.15 16 3 Si 1.10 52.93 26.22 68.60 1.80 54.73 16 4 H -0.25 -11.20 6.18 99.48 0.61 -10.58 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.34 -20.07 10.24 84.03 0.86 -19.21 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 9 N -0.62 -30.85 3.05 -691.55 -2.11 -32.96 16 10 C 0.11 4.70 6.04 86.73 0.52 5.23 16 11 C -0.10 -3.00 5.03 31.78 0.16 -2.84 16 12 C 0.09 2.63 2.73 46.38 0.13 2.76 16 13 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 14 N -0.53 -12.60 4.52 -861.47 -3.90 -16.50 16 15 C 0.04 0.63 5.43 86.38 0.47 1.10 16 16 C 0.11 1.51 6.45 86.35 0.56 2.07 16 17 N -0.61 -12.02 3.01 -817.97 -2.46 -14.49 16 18 C 0.54 11.99 7.49 87.66 0.66 12.64 16 19 O -0.58 -17.99 15.70 -3.02 -0.05 -18.03 16 20 C -0.14 -2.12 4.95 -11.54 -0.06 -2.18 16 21 H 0.15 1.32 6.88 -2.39 -0.02 1.31 16 22 C -0.09 -1.09 10.24 30.60 0.31 -0.78 16 23 C -0.23 -3.49 5.05 -52.18 -0.26 -3.75 16 24 C -0.14 -2.27 10.16 30.60 0.31 -1.96 16 25 C -0.10 -1.13 10.53 30.59 0.32 -0.81 16 26 C 0.12 2.78 6.59 86.35 0.57 3.35 16 27 C 0.05 1.18 5.52 86.38 0.48 1.65 16 28 C 0.14 5.62 5.95 86.93 0.52 6.14 16 29 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.03 1.16 3.85 -2.39 -0.01 1.16 16 32 H 0.10 2.19 7.96 -2.39 -0.02 2.17 16 33 H 0.09 2.39 8.11 -2.39 -0.02 2.37 16 34 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.11 1.50 6.64 -2.39 -0.02 1.48 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.12 0.86 5.78 -2.39 -0.01 0.85 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.03 7.07 -2.39 -0.02 2.02 16 46 H 0.08 2.13 7.05 -2.39 -0.02 2.11 16 47 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.02 0.96 7.87 -2.39 -0.02 0.94 16 Total: -1.00 -77.00 378.15 0.36 -76.64 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.80 Total: 9.92 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.99 Total: 0.27 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -8.17 Total: -123.53 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.03 kcal Atomic # 14 Polarization: 52.93 SS G_CDS: 1.80 Total: 54.73 kcal Total: -77.00 0.36 -76.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046066154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.087 kcal (2) G-P(sol) polarization free energy of solvation -77.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds