Wall clock time and date at job start Sat Apr 11 2020 00:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00239 * 2 1 4 4 H 1.48503 * 109.46623 * 269.99607 * 3 2 1 5 5 H 1.48493 * 109.47469 * 29.99320 * 3 2 1 6 6 H 1.48501 * 109.47173 * 150.00034 * 3 2 1 7 7 C 1.38814 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00018 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64914 * 0.04086 * 9 7 2 11 11 C 1.54902 * 104.83460 * 204.09379 * 10 9 7 12 12 C 1.55159 * 101.58048 * 322.98679 * 11 10 9 13 13 H 1.09002 * 110.72195 * 277.14258 * 12 11 10 14 14 N 1.46904 * 110.87285 * 153.93719 * 12 11 10 15 15 C 1.46893 * 110.99774 * 184.28258 * 14 12 11 16 16 C 1.53246 * 109.33763 * 172.74383 * 15 14 12 17 17 N 1.47081 * 108.52047 * 53.83121 * 16 15 14 18 18 C 1.34779 * 120.88529 * 128.83211 * 17 16 15 19 19 O 1.21273 * 120.00403 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.99682 * 359.97438 * 18 17 16 21 21 H 1.09001 * 115.55479 * 325.66687 * 20 18 17 22 22 C 1.53000 * 117.50354 * 111.37543 * 20 18 17 23 23 C 1.52994 * 117.49982 * 179.97438 * 20 18 17 24 24 C 1.52994 * 138.59250 * 121.61558 * 23 20 18 25 25 C 1.52997 * 138.58828 * 23.39642 * 23 20 18 26 26 C 1.47081 * 118.23502 * 308.81442 * 17 16 15 27 27 C 1.46900 * 111.00176 * 59.97910 * 14 12 11 28 28 C 1.47023 * 125.64955 * 179.97438 * 9 7 2 29 29 H 0.97005 * 119.99858 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.36735 * 322.93114 * 10 9 7 31 31 H 1.08998 * 110.36621 * 85.13981 * 10 9 7 32 32 H 1.09003 * 111.00632 * 204.91666 * 11 10 9 33 33 H 1.08993 * 111.00718 * 81.06148 * 11 10 9 34 34 H 1.08996 * 109.49572 * 292.69923 * 15 14 12 35 35 H 1.09003 * 109.49767 * 52.79089 * 15 14 12 36 36 H 1.08991 * 109.62978 * 294.12098 * 16 15 14 37 37 H 1.09006 * 109.78900 * 173.62734 * 16 15 14 38 38 H 1.08995 * 117.50527 * 214.97887 * 22 20 18 39 39 H 1.09003 * 117.49609 * 359.97438 * 22 20 18 40 40 H 1.09001 * 117.49646 * 336.59671 * 24 23 20 41 41 H 1.09000 * 117.49842 * 121.61740 * 24 23 20 42 42 H 1.08995 * 117.49873 * 238.38672 * 25 23 20 43 43 H 1.09000 * 117.49506 * 23.38691 * 25 23 20 44 44 H 1.08994 * 109.62758 * 291.47492 * 26 17 16 45 45 H 1.09008 * 109.78793 * 170.98549 * 26 17 16 46 46 H 1.09004 * 109.49271 * 307.21800 * 27 14 12 47 47 H 1.09004 * 109.48831 * 67.28971 * 27 14 12 48 48 H 1.09003 * 109.87849 * 59.56432 * 28 9 7 49 49 H 1.08995 * 110.01226 * 298.46924 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1416 -2.5331 -0.0009 11 6 -0.4024 -3.9321 0.6110 12 6 0.7781 -4.7524 0.0271 13 1 0.5465 -5.0981 -0.9804 14 7 1.1100 -5.8863 0.9002 15 6 2.2910 -6.6050 0.4036 16 6 2.7113 -7.6614 1.4310 17 7 1.5480 -8.5096 1.7317 18 6 1.6363 -9.8530 1.6678 19 8 0.6670 -10.5371 1.9195 20 6 2.9395 -10.5049 1.2837 21 1 3.5405 -9.9611 0.5550 22 6 3.6818 -11.2918 2.3658 23 6 2.9758 -12.0335 1.2297 24 6 3.2810 -13.1390 0.2171 25 6 2.0004 -13.1989 1.0522 26 6 0.2857 -7.8529 2.1043 27 6 -0.0391 -6.7891 1.0504 28 6 1.9316 -3.7275 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6000 -1.7587 0.6142 31 1 -0.5266 -2.4849 -1.0194 32 1 -1.3595 -4.3326 0.2766 33 1 -0.3538 -3.8978 1.6993 34 1 2.0497 -7.0922 -0.5411 35 1 3.1084 -5.9002 0.2514 36 1 3.0518 -7.1704 2.3426 37 1 3.5153 -8.2739 1.0227 38 1 4.7713 -11.2655 2.3492 39 1 3.2277 -11.3375 3.3556 40 1 3.1813 -12.8943 -0.8404 41 1 4.0763 -13.8422 0.4642 42 1 1.9533 -13.9414 1.8486 43 1 1.0580 -12.9935 0.5444 44 1 0.3932 -7.3804 3.0806 45 1 -0.5169 -8.5896 2.1403 46 1 -0.9116 -6.2176 1.3672 47 1 -0.2480 -7.2736 0.0966 48 1 2.5575 -3.8511 0.8844 49 1 2.5302 -3.8661 -0.8998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046066156.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:08:13 Heat of formation + Delta-G solvation = 75.379648 kcal Electronic energy + Delta-G solvation = -27223.004417 eV Core-core repulsion = 23574.334676 eV Total energy + Delta-G solvation = -3648.669741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.54543 -38.95523 -37.69133 -36.52901 -34.26587 -32.98747 -31.94656 -31.33648 -29.28099 -27.97657 -26.28886 -24.47936 -24.21619 -23.18610 -22.68620 -21.33842 -20.10311 -19.93328 -19.51968 -18.58869 -17.55381 -16.90272 -16.11518 -15.77609 -15.48068 -15.27565 -14.88241 -14.78497 -14.55373 -14.50210 -14.24925 -14.03502 -13.24820 -12.99404 -12.74531 -12.51906 -12.37470 -12.02846 -11.85388 -11.78786 -11.62420 -11.53027 -11.31840 -11.27498 -10.93222 -10.81789 -10.52955 -10.42087 -10.32009 -10.25229 -10.14369 -10.04752 -9.85418 -9.77047 -9.56050 -8.84133 -8.64359 -8.14620 -6.82444 -5.64619 -3.06191 2.29997 2.70123 3.39432 3.40270 3.44871 3.45455 3.47259 3.92213 3.96113 4.28662 4.45997 4.50447 4.66917 4.83040 4.88862 4.98599 5.10625 5.12528 5.25853 5.28550 5.30859 5.31737 5.36334 5.40644 5.44973 5.50239 5.57709 5.63258 5.63905 5.65426 5.72151 5.80334 5.84345 5.88075 5.88228 6.00310 6.32462 6.34889 6.54785 6.55641 6.65284 6.69174 7.19270 7.23332 7.40792 7.52397 7.63382 7.86344 8.03581 8.37049 9.22624 9.83747 10.48601 11.39386 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.032390 B = 0.002364 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.245306 B =11839.089107 C =12316.017617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.134 4.134 12 C 0.071 3.929 13 H 0.042 0.958 14 N -0.525 5.525 15 C 0.038 3.962 16 C 0.112 3.888 17 N -0.608 5.608 18 C 0.543 3.457 19 O -0.540 6.540 20 C -0.143 4.143 21 H 0.125 0.875 22 C -0.098 4.098 23 C -0.202 4.202 24 C -0.130 4.130 25 C -0.113 4.113 26 C 0.118 3.882 27 C 0.043 3.957 28 C 0.147 3.853 29 H 0.252 0.748 30 H 0.108 0.892 31 H 0.010 0.990 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.033 0.967 48 H 0.035 0.965 49 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.641 -23.347 2.715 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.028 3.972 11 C -0.173 4.173 12 C -0.037 4.037 13 H 0.060 0.940 14 N -0.250 5.250 15 C -0.091 4.091 16 C -0.011 4.011 17 N -0.342 5.342 18 C 0.331 3.669 19 O -0.417 6.417 20 C -0.164 4.164 21 H 0.143 0.857 22 C -0.135 4.135 23 C -0.203 4.203 24 C -0.167 4.167 25 C -0.150 4.150 26 C -0.005 4.005 27 C -0.086 4.086 28 C 0.021 3.979 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 5.193 -23.284 3.315 24.085 hybrid contribution 0.340 0.746 -1.051 1.333 sum 5.533 -22.537 2.265 23.317 Atomic orbital electron populations 1.69792 1.04896 1.24743 1.57729 1.24791 0.95738 0.97718 1.02532 0.86064 0.78533 0.83340 0.77516 1.21698 1.21655 1.20687 1.19065 0.90478 0.82401 1.42907 0.90509 1.44428 1.01968 0.99638 1.86877 1.21919 0.84773 0.92477 0.98068 1.23088 0.94920 0.98311 1.00980 1.22703 0.98025 0.89843 0.93099 0.94039 1.61999 1.04140 1.08762 1.50100 1.22489 0.95153 0.95927 0.95521 1.21938 0.87467 0.91940 0.99741 1.48138 1.12699 1.05131 1.68198 1.19657 0.88876 0.81552 0.76801 1.90672 1.38534 1.62607 1.49900 1.22004 0.97523 0.92544 1.04299 0.85693 1.22644 0.98898 0.98641 0.93358 1.21157 1.07137 0.89063 1.02938 1.22768 0.99767 0.97980 0.96147 1.22590 0.93996 0.96813 1.01605 1.21731 0.86030 0.94512 0.98183 1.22452 0.94637 0.93736 0.97782 1.21212 0.93315 0.85607 0.97778 0.93746 0.87435 0.97207 0.92812 0.91074 0.94766 0.88882 0.90162 0.89474 0.87496 0.88079 0.88536 0.88302 0.88547 0.88238 0.90586 0.88941 0.89006 0.94862 0.94724 0.96698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.13 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.48 3.39 -170.08 -0.58 -16.05 16 10 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 11 C -0.13 -2.53 5.36 -24.59 -0.13 -2.67 16 12 C 0.07 1.25 2.64 -65.87 -0.17 1.07 16 13 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 14 N -0.52 -7.58 4.46 -224.15 -1.00 -8.58 16 15 C 0.04 0.46 5.46 -3.70 -0.02 0.44 16 16 C 0.11 1.12 6.51 -3.60 -0.02 1.09 16 17 N -0.61 -7.10 3.01 -172.46 -0.52 -7.62 16 18 C 0.54 6.77 7.49 -10.99 -0.08 6.69 16 19 O -0.54 -8.44 15.70 5.56 0.09 -8.36 16 20 C -0.14 -1.36 5.17 -91.78 -0.47 -1.83 16 21 H 0.13 0.97 6.55 -51.93 -0.34 0.63 16 22 C -0.10 -0.78 10.23 -26.76 -0.27 -1.06 16 23 C -0.20 -1.88 5.05 -154.54 -0.78 -2.66 16 24 C -0.13 -0.95 10.53 -26.73 -0.28 -1.23 16 25 C -0.11 -1.02 10.16 -26.73 -0.27 -1.29 16 26 C 0.12 1.43 6.59 -3.60 -0.02 1.40 16 27 C 0.04 0.55 5.46 -3.70 -0.02 0.53 16 28 C 0.15 3.05 5.71 -3.06 -0.02 3.03 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.90 7.94 -51.93 -0.41 0.49 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 1.13 6.83 -51.93 -0.35 0.77 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.65 5.57 -51.93 -0.29 0.37 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.16 7.07 -51.92 -0.37 0.79 16 46 H 0.09 1.17 6.79 -51.93 -0.35 0.82 16 47 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.03 0.72 7.75 -51.93 -0.40 0.32 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -32.20 380.02 -11.87 -44.08 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.29 Total: -0.33 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -2.84 Total: 0.48 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -1.54 Total: -58.61 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.20 -11.87 -44.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046066156.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.457 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds