Wall clock time and date at job start Sat Apr 11 2020 00:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00239 * 2 1 4 4 H 1.48503 * 109.46623 * 269.99607 * 3 2 1 5 5 H 1.48493 * 109.47469 * 29.99320 * 3 2 1 6 6 H 1.48501 * 109.47173 * 150.00034 * 3 2 1 7 7 C 1.38814 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00018 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.47422 * 125.64914 * 0.04086 * 9 7 2 11 11 C 1.54902 * 104.83460 * 204.09379 * 10 9 7 12 12 C 1.55159 * 101.58048 * 322.98679 * 11 10 9 13 13 H 1.09002 * 110.72195 * 277.14258 * 12 11 10 14 14 N 1.46904 * 110.87285 * 153.93719 * 12 11 10 15 15 C 1.46893 * 110.99774 * 184.28258 * 14 12 11 16 16 C 1.53246 * 109.33763 * 172.74383 * 15 14 12 17 17 N 1.47081 * 108.52047 * 53.83121 * 16 15 14 18 18 C 1.34779 * 120.88529 * 128.83211 * 17 16 15 19 19 O 1.21273 * 120.00403 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.99682 * 359.97438 * 18 17 16 21 21 H 1.09001 * 115.55479 * 325.66687 * 20 18 17 22 22 C 1.53000 * 117.50354 * 111.37543 * 20 18 17 23 23 C 1.52994 * 117.49982 * 179.97438 * 20 18 17 24 24 C 1.52994 * 138.59250 * 121.61558 * 23 20 18 25 25 C 1.52997 * 138.58828 * 23.39642 * 23 20 18 26 26 C 1.47081 * 118.23502 * 308.81442 * 17 16 15 27 27 C 1.46900 * 111.00176 * 59.97910 * 14 12 11 28 28 C 1.47023 * 125.64955 * 179.97438 * 9 7 2 29 29 H 0.97005 * 119.99858 * 0.02562 * 1 2 3 30 30 H 1.09000 * 110.36735 * 322.93114 * 10 9 7 31 31 H 1.08998 * 110.36621 * 85.13981 * 10 9 7 32 32 H 1.09003 * 111.00632 * 204.91666 * 11 10 9 33 33 H 1.08993 * 111.00718 * 81.06148 * 11 10 9 34 34 H 1.08996 * 109.49572 * 292.69923 * 15 14 12 35 35 H 1.09003 * 109.49767 * 52.79089 * 15 14 12 36 36 H 1.08991 * 109.62978 * 294.12098 * 16 15 14 37 37 H 1.09006 * 109.78900 * 173.62734 * 16 15 14 38 38 H 1.08995 * 117.50527 * 214.97887 * 22 20 18 39 39 H 1.09003 * 117.49609 * 359.97438 * 22 20 18 40 40 H 1.09001 * 117.49646 * 336.59671 * 24 23 20 41 41 H 1.09000 * 117.49842 * 121.61740 * 24 23 20 42 42 H 1.08995 * 117.49873 * 238.38672 * 25 23 20 43 43 H 1.09000 * 117.49506 * 23.38691 * 25 23 20 44 44 H 1.08994 * 109.62758 * 291.47492 * 26 17 16 45 45 H 1.09008 * 109.78793 * 170.98549 * 26 17 16 46 46 H 1.09004 * 109.49271 * 307.21800 * 27 14 12 47 47 H 1.09004 * 109.48831 * 67.28971 * 27 14 12 48 48 H 1.09003 * 109.87849 * 59.56432 * 28 9 7 49 49 H 1.08995 * 110.01226 * 298.46924 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1416 -2.5331 -0.0009 11 6 -0.4024 -3.9321 0.6110 12 6 0.7781 -4.7524 0.0271 13 1 0.5465 -5.0981 -0.9804 14 7 1.1100 -5.8863 0.9002 15 6 2.2910 -6.6050 0.4036 16 6 2.7113 -7.6614 1.4310 17 7 1.5480 -8.5096 1.7317 18 6 1.6363 -9.8530 1.6678 19 8 0.6670 -10.5371 1.9195 20 6 2.9395 -10.5049 1.2837 21 1 3.5405 -9.9611 0.5550 22 6 3.6818 -11.2918 2.3658 23 6 2.9758 -12.0335 1.2297 24 6 3.2810 -13.1390 0.2171 25 6 2.0004 -13.1989 1.0522 26 6 0.2857 -7.8529 2.1043 27 6 -0.0391 -6.7891 1.0504 28 6 1.9316 -3.7275 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.6000 -1.7587 0.6142 31 1 -0.5266 -2.4849 -1.0194 32 1 -1.3595 -4.3326 0.2766 33 1 -0.3538 -3.8978 1.6993 34 1 2.0497 -7.0922 -0.5411 35 1 3.1084 -5.9002 0.2514 36 1 3.0518 -7.1704 2.3426 37 1 3.5153 -8.2739 1.0227 38 1 4.7713 -11.2655 2.3492 39 1 3.2277 -11.3375 3.3556 40 1 3.1813 -12.8943 -0.8404 41 1 4.0763 -13.8422 0.4642 42 1 1.9533 -13.9414 1.8486 43 1 1.0580 -12.9935 0.5444 44 1 0.3932 -7.3804 3.0806 45 1 -0.5169 -8.5896 2.1403 46 1 -0.9116 -6.2176 1.3672 47 1 -0.2480 -7.2736 0.0966 48 1 2.5575 -3.8511 0.8844 49 1 2.5302 -3.8661 -0.8998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046066156.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:08:13 Heat of formation + Delta-G solvation = 56.078503 kcal Electronic energy + Delta-G solvation = -27223.841377 eV Core-core repulsion = 23574.334676 eV Total energy + Delta-G solvation = -3649.506701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47735 -40.11675 -38.67856 -37.81710 -35.61593 -33.94296 -33.51609 -32.30656 -31.04383 -29.41086 -27.70870 -26.00978 -25.36689 -24.24463 -23.28797 -22.29452 -21.83732 -21.14390 -20.61277 -19.42936 -18.93177 -18.43310 -17.23574 -16.90755 -16.55772 -16.47139 -15.96418 -15.90369 -15.87034 -15.50382 -15.34416 -15.13340 -14.86833 -14.27717 -14.16220 -13.52110 -13.48018 -13.41100 -13.36979 -12.93356 -12.75587 -12.72765 -12.52905 -12.48728 -12.35691 -12.29415 -11.98619 -11.83228 -11.74318 -11.57334 -11.40311 -11.17637 -11.05280 -10.93389 -10.73764 -10.69435 -9.84349 -9.28904 -8.87652 -7.76073 -5.20509 1.41953 1.47994 1.49911 1.58746 1.83772 2.49357 2.70294 2.76495 2.84146 3.31213 3.34667 3.51855 3.68928 3.75836 3.81966 3.90803 4.00012 4.05389 4.10153 4.21924 4.28651 4.28844 4.39447 4.44372 4.54210 4.60260 4.64976 4.72285 4.73356 4.75736 4.78837 4.82579 4.85663 4.90883 4.99865 5.00858 5.01451 5.03300 5.09488 5.13925 5.26671 5.41627 5.47995 5.64080 5.80751 6.03889 6.08649 6.32190 6.38137 7.10912 7.11744 7.79457 8.43346 9.26134 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.032390 B = 0.002364 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.245306 B =11839.089107 C =12316.017617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.236 4.236 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.117 4.117 12 C 0.089 3.911 13 H 0.043 0.957 14 N -0.529 5.529 15 C 0.036 3.964 16 C 0.117 3.883 17 N -0.609 5.609 18 C 0.537 3.463 19 O -0.580 6.580 20 C -0.150 4.150 21 H 0.148 0.852 22 C -0.082 4.082 23 C -0.227 4.227 24 C -0.107 4.107 25 C -0.133 4.133 26 C 0.122 3.878 27 C 0.048 3.952 28 C 0.147 3.853 29 H 0.247 0.753 30 H 0.074 0.926 31 H -0.015 1.015 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.030 0.970 48 H 0.037 0.963 49 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.998 -24.756 2.831 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.100 0.900 9 N -0.352 5.352 10 C 0.029 3.971 11 C -0.156 4.156 12 C -0.019 4.019 13 H 0.061 0.939 14 N -0.254 5.254 15 C -0.092 4.092 16 C -0.005 4.005 17 N -0.341 5.341 18 C 0.327 3.673 19 O -0.460 6.460 20 C -0.171 4.171 21 H 0.165 0.835 22 C -0.119 4.119 23 C -0.227 4.227 24 C -0.144 4.144 25 C -0.169 4.169 26 C -0.001 4.001 27 C -0.080 4.080 28 C 0.022 3.978 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.003 0.997 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.136 0.864 38 H 0.154 0.846 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.048 0.952 48 H 0.055 0.945 49 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 7.585 -24.716 3.431 26.081 hybrid contribution -0.410 1.139 -1.091 1.630 sum 7.175 -23.577 2.340 24.756 Atomic orbital electron populations 1.70052 1.06263 1.24993 1.58748 1.25658 0.96661 1.01060 1.02838 0.85028 0.77664 0.78960 0.77378 1.21459 1.22057 1.19246 1.19455 0.91053 0.83642 1.42316 0.89983 1.44750 1.02716 1.00953 1.86821 1.21700 0.84304 0.94770 0.96325 1.22863 0.96881 0.95332 1.00484 1.22387 0.95744 0.90172 0.93625 0.93876 1.61950 1.05394 1.08763 1.49319 1.22583 0.94029 0.96298 0.96289 1.22042 0.87434 0.91528 0.99474 1.48241 1.12928 1.05271 1.67685 1.20237 0.89565 0.81516 0.75948 1.90654 1.40190 1.63445 1.51743 1.22058 0.96419 0.92794 1.05784 0.83488 1.22743 1.00235 0.96694 0.92267 1.21434 1.07753 0.89051 1.04478 1.22848 0.98756 0.96843 0.95916 1.22588 0.94059 0.97627 1.02675 1.21622 0.86460 0.94018 0.98003 1.22423 0.94165 0.93555 0.97866 1.21321 0.94351 0.84285 0.97851 0.94376 0.90828 0.99703 0.90407 0.91231 0.94613 0.88716 0.89701 0.86369 0.84594 0.89047 0.88029 0.86263 0.88024 0.90259 0.90252 0.89654 0.88878 0.95197 0.94455 0.96233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.99 10.09 21.65 0.22 -56.77 16 2 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 3 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.24 -13.22 10.27 84.03 0.86 -12.36 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.63 -32.42 3.39 -692.01 -2.35 -34.77 16 10 C 0.15 7.69 5.89 86.85 0.51 8.20 16 11 C -0.12 -4.35 5.36 31.98 0.17 -4.18 16 12 C 0.09 3.00 2.64 46.10 0.12 3.13 16 13 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 14 N -0.53 -14.28 4.46 -863.07 -3.85 -18.12 16 15 C 0.04 0.79 5.46 86.39 0.47 1.26 16 16 C 0.12 1.98 6.51 86.35 0.56 2.54 16 17 N -0.61 -13.06 3.01 -817.94 -2.46 -15.53 16 18 C 0.54 12.67 7.49 87.66 0.66 13.33 16 19 O -0.58 -18.12 15.70 -3.01 -0.05 -18.17 16 20 C -0.15 -2.47 5.17 -11.54 -0.06 -2.53 16 21 H 0.15 1.70 6.55 -2.39 -0.02 1.69 16 22 C -0.08 -1.08 10.23 30.58 0.31 -0.77 16 23 C -0.23 -3.74 5.05 -52.20 -0.26 -4.00 16 24 C -0.11 -1.31 10.53 30.59 0.32 -0.99 16 25 C -0.13 -2.31 10.16 30.59 0.31 -2.00 16 26 C 0.12 2.80 6.59 86.35 0.57 3.37 16 27 C 0.05 1.18 5.46 86.38 0.47 1.65 16 28 C 0.15 5.97 5.71 86.73 0.49 6.46 16 29 H 0.25 14.35 8.31 -92.70 -0.77 13.57 16 30 H 0.07 4.18 5.87 -2.39 -0.01 4.17 16 31 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 32 H 0.08 2.52 7.94 -2.39 -0.02 2.50 16 33 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 2.04 6.83 -2.39 -0.02 2.03 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.12 1.29 5.57 -2.38 -0.01 1.27 16 38 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.09 2.11 7.07 -2.38 -0.02 2.10 16 46 H 0.09 2.24 6.79 -2.39 -0.02 2.22 16 47 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.04 1.50 7.75 -2.39 -0.02 1.48 16 49 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -71.42 380.02 0.45 -70.97 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.93 Total: 15.13 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.98 Total: 9.61 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -8.44 Total: -125.18 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.05 Total: -18.17 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -71.42 0.45 -70.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046066156.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.047 kcal (2) G-P(sol) polarization free energy of solvation -71.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds