Wall clock time and date at job start Sat Apr 11 2020 00:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34479 * 125.57636 * 2 1 4 4 C 1.46694 * 106.33552 * 180.08875 * 3 2 1 5 5 C 1.47258 * 126.94382 * 179.88792 * 4 3 2 6 6 O 1.21623 * 119.99973 * 179.68395 * 5 4 3 7 7 N 1.34774 * 120.00217 * 359.68196 * 5 4 3 8 8 C 1.46498 * 120.00360 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.20094 * 35.64102 * 8 7 5 10 10 C 1.50129 * 109.21080 * 154.99860 * 8 7 5 11 11 C 1.52521 * 105.41551 * 218.03357 * 10 8 7 12 12 C 1.46240 * 114.27680 * 270.59232 * 11 10 8 13 13 N 1.50170 * 107.58691 * 58.37370 * 12 11 10 14 14 C 1.36936 * 120.53513 * 109.60798 * 13 12 11 15 15 H 1.08007 * 119.99894 * 320.24180 * 14 13 12 16 16 C 1.38808 * 120.00119 * 140.24463 * 14 13 12 17 17 N 1.31621 * 120.00243 * 156.34542 * 16 14 13 18 18 Si 1.86797 * 120.00084 * 336.34765 * 16 14 13 19 19 H 1.48500 * 109.47193 * 95.56814 * 18 16 14 20 20 H 1.48506 * 109.47159 * 215.57025 * 18 16 14 21 21 H 1.48499 * 109.47202 * 335.56425 * 18 16 14 22 22 C 1.43406 * 118.94951 * 289.71346 * 13 12 11 23 23 C 1.54840 * 109.21154 * 276.32792 * 8 7 5 24 24 C 1.36772 * 106.10949 * 359.62252 * 4 3 2 25 25 C 1.50701 * 125.79812 * 180.20463 * 24 4 3 26 26 N 1.34654 * 108.40280 * 0.22849 * 24 4 3 27 27 C 1.46491 * 124.85657 * 179.97438 * 26 24 4 28 28 H 1.09001 * 109.46935 * 270.34275 * 1 2 3 29 29 H 1.09003 * 109.46466 * 30.33653 * 1 2 3 30 30 H 1.08996 * 109.47244 * 150.33325 * 1 2 3 31 31 H 1.08003 * 126.83744 * 359.96126 * 3 2 1 32 32 H 0.97006 * 119.99624 * 0.02562 * 7 5 4 33 33 H 1.08994 * 110.24939 * 99.05937 * 10 8 7 34 34 H 1.09005 * 110.36925 * 337.06844 * 10 8 7 35 35 H 1.08997 * 108.52586 * 149.35103 * 11 10 8 36 36 H 1.09007 * 108.40543 * 31.74588 * 11 10 8 37 37 H 1.09002 * 109.84894 * 177.91592 * 12 11 10 38 38 H 1.08994 * 109.84646 * 298.83700 * 12 11 10 39 39 H 0.97003 * 120.00492 * 179.97438 * 17 16 14 40 40 H 1.09003 * 108.11554 * 329.72393 * 22 13 12 41 41 H 1.08994 * 107.96903 * 213.07465 * 22 13 12 42 42 H 1.09001 * 109.35460 * 320.99439 * 23 8 7 43 43 H 1.09002 * 109.35766 * 80.71448 * 23 8 7 44 44 H 1.08999 * 109.46908 * 90.02516 * 25 24 4 45 45 H 1.08994 * 109.47460 * 210.02738 * 25 24 4 46 46 H 1.09004 * 109.47360 * 330.02917 * 25 24 4 47 47 H 1.08997 * 109.47482 * 89.99339 * 27 26 24 48 48 H 1.08998 * 109.47368 * 210.00384 * 27 26 24 49 49 H 1.09002 * 109.46863 * 330.00186 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6744 0.6104 -0.0022 5 6 4.8979 1.4299 -0.0053 6 8 5.9893 0.8932 -0.0010 7 7 4.8082 2.7746 -0.0129 8 6 6.0254 3.5899 -0.0154 9 1 6.7898 3.0911 -0.6112 10 6 5.7217 4.9290 -0.6225 11 6 6.9547 5.2906 -1.4442 12 6 7.9786 6.0240 -0.7011 13 7 8.3901 5.1724 0.4653 14 6 9.6270 4.5856 0.4962 15 1 10.0469 4.1629 -0.4047 16 6 10.3412 4.5340 1.6854 17 7 11.2652 3.6128 1.8587 18 14 9.9908 5.7718 3.0398 19 1 9.0366 5.1833 4.0136 20 1 11.2571 6.1171 3.7345 21 1 9.4004 6.9992 2.4480 22 6 7.4663 4.9814 1.5454 23 6 6.5360 3.7476 1.4379 24 6 3.5997 -0.7553 0.0053 25 6 4.7721 -1.7022 0.0107 26 7 2.3007 -1.1100 0.0066 27 6 1.8097 -2.4901 0.0134 28 1 -0.3633 0.0061 1.0277 29 1 -0.3632 0.8870 -0.5191 30 1 -0.3633 -0.8929 -0.5086 31 1 1.9631 2.1233 -0.0006 32 1 3.9377 3.2026 -0.0159 33 1 5.5594 5.6700 0.1602 34 1 4.8448 4.8635 -1.2667 35 1 6.6396 5.8990 -2.2920 36 1 7.3963 4.3698 -1.8255 37 1 8.8388 6.2121 -1.3437 38 1 7.5705 6.9692 -0.3434 39 1 11.7645 3.5770 2.6896 40 1 6.8422 5.8720 1.6191 41 1 8.0406 4.8946 2.4677 42 1 5.6857 3.8767 2.1075 43 1 7.0898 2.8539 1.7252 44 1 5.0542 -1.9252 1.0397 45 1 4.4958 -2.6255 -0.4985 46 1 5.6142 -1.2408 -0.5051 47 1 1.6876 -2.8273 1.0427 48 1 0.8497 -2.5368 -0.5006 49 1 2.5267 -3.1334 -0.4968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052923590.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:09:30 Heat of formation + Delta-G solvation = 34.657129 kcal Electronic energy + Delta-G solvation = -27726.481777 eV Core-core repulsion = 24076.046175 eV Total energy + Delta-G solvation = -3650.435602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.52538 -39.26552 -37.63007 -34.57446 -33.17061 -32.70584 -32.65051 -31.16400 -30.48890 -29.25756 -27.00152 -26.08814 -24.95710 -24.01782 -23.11950 -21.71792 -20.26448 -19.98095 -19.26153 -18.61779 -16.93588 -16.41165 -15.99005 -15.87834 -15.50524 -15.09672 -14.54648 -14.33221 -14.22601 -13.79632 -13.58131 -13.49648 -13.25262 -13.12011 -13.02721 -12.80674 -12.60102 -12.56019 -12.48693 -12.37860 -11.91240 -11.80312 -11.73458 -11.67830 -11.45062 -10.77103 -10.71641 -10.42208 -10.28988 -10.12547 -9.91725 -9.56661 -9.44995 -9.30557 -8.69975 -8.46732 -8.29952 -8.01124 -6.63080 -5.88707 -3.31118 1.85395 2.29669 2.62941 3.41629 3.54040 3.60740 3.78572 3.90260 4.44063 4.52898 4.63642 4.70733 4.75000 4.91597 5.00627 5.05416 5.18036 5.24660 5.28332 5.30588 5.42899 5.51904 5.53340 5.58384 5.64971 5.66194 5.80491 5.97115 5.99388 6.04074 6.12863 6.23519 6.30437 6.36501 6.43034 6.53239 6.72147 6.74964 6.78175 6.87457 6.92976 7.00009 7.04482 7.13382 7.15022 7.19758 8.06925 8.20769 8.49348 8.81883 9.13312 9.83263 10.27832 11.26783 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.003193 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.584048 B = 8766.895803 C = 9384.514474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.004 3.996 3 C -0.166 4.166 4 C -0.227 4.227 5 C 0.584 3.416 6 O -0.541 6.541 7 N -0.725 5.725 8 C 0.158 3.842 9 H 0.094 0.906 10 C -0.119 4.119 11 C -0.130 4.130 12 C 0.136 3.864 13 N -0.600 5.600 14 C -0.265 4.265 15 H 0.074 0.926 16 C 0.040 3.960 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.287 1.287 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.153 3.847 23 C -0.147 4.147 24 C 0.102 3.898 25 C -0.094 4.094 26 N -0.444 5.444 27 C 0.067 3.933 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.391 0.609 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.262 0.738 40 H 0.028 0.972 41 H 0.042 0.958 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.104 0.896 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.592 -7.704 -4.894 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.190 4.190 4 C -0.237 4.237 5 C 0.372 3.628 6 O -0.420 6.420 7 N -0.376 5.376 8 C 0.054 3.946 9 H 0.112 0.888 10 C -0.157 4.157 11 C -0.170 4.170 12 C 0.012 3.988 13 N -0.323 5.323 14 C -0.394 4.394 15 H 0.092 0.908 16 C -0.161 4.161 17 N -0.537 5.537 18 Si 0.706 3.294 19 H -0.214 1.214 20 H -0.230 1.230 21 H -0.195 1.195 22 C 0.025 3.975 23 C -0.189 4.189 24 C -0.014 4.014 25 C -0.151 4.151 26 N -0.121 5.121 27 C -0.075 4.075 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.224 0.776 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.122 0.878 47 H 0.092 0.908 48 H 0.102 0.898 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.762 -8.461 -4.812 25.678 hybrid contribution -0.710 0.695 0.998 1.409 sum -24.473 -7.766 -3.814 25.957 Atomic orbital electron populations 1.20298 0.88040 1.03018 1.02491 1.20151 0.93370 0.85633 1.11230 1.21754 0.91051 0.97434 1.08761 1.20253 0.93076 0.92233 1.18148 1.17348 0.87540 0.82015 0.75932 1.90789 1.28460 1.72269 1.50457 1.46195 1.09727 1.05900 1.75731 1.21117 0.85650 0.89934 0.97853 0.88848 1.21296 0.97897 0.96980 0.99536 1.20870 0.96060 1.01804 0.98235 1.20443 0.96045 0.92127 0.90175 1.44187 1.12587 1.55031 1.20527 1.18699 0.92395 1.30990 0.97300 0.90806 1.25522 0.95659 0.97009 0.97932 1.69913 1.26154 1.31575 1.26036 0.86906 0.76052 0.84115 0.82305 1.21447 1.23049 1.19466 1.20625 0.91177 0.93585 0.92107 1.23199 0.98720 1.02139 0.94838 1.20312 0.84433 0.94263 1.02420 1.20577 0.94796 0.96222 1.03473 1.43421 1.05200 1.06270 1.57252 1.22049 1.01345 0.80714 1.03414 0.91185 0.90163 0.92004 0.83962 0.77577 0.91094 0.92072 0.93489 0.91644 0.91465 0.95171 0.92828 0.95378 0.94004 0.93271 0.91623 0.90494 0.92246 0.87764 0.90772 0.89787 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.06 36.01 0.36 -0.14 16 2 C 0.00 0.04 6.85 -81.86 -0.56 -0.52 16 3 C -0.17 -1.96 10.45 -37.50 -0.39 -2.35 16 4 C -0.23 -3.40 6.29 -103.35 -0.65 -4.05 16 5 C 0.58 10.47 7.76 -12.60 -0.10 10.37 16 6 O -0.54 -11.88 14.48 5.26 0.08 -11.81 16 7 N -0.73 -11.56 4.97 -55.38 -0.28 -11.83 16 8 C 0.16 2.91 2.22 -68.39 -0.15 2.75 16 9 H 0.09 2.09 6.26 -51.93 -0.33 1.77 16 10 C -0.12 -1.85 5.34 -28.40 -0.15 -2.00 16 11 C -0.13 -2.21 5.20 -30.19 -0.16 -2.37 16 12 C 0.14 2.68 6.11 -5.20 -0.03 2.65 16 13 N -0.60 -14.56 2.14 -175.11 -0.37 -14.93 16 14 C -0.27 -7.65 9.92 -15.06 -0.15 -7.80 16 15 H 0.07 2.31 8.06 -52.48 -0.42 1.88 16 16 C 0.04 1.18 5.28 -17.43 -0.09 1.09 16 17 N -0.90 -28.36 13.97 55.49 0.78 -27.59 16 18 Si 0.88 23.00 25.27 -169.99 -4.29 18.71 16 19 H -0.29 -7.41 6.74 56.52 0.38 -7.03 16 20 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.15 3.47 4.22 -4.68 -0.02 3.46 16 23 C -0.15 -3.06 5.98 -24.76 -0.15 -3.21 16 24 C 0.10 1.35 6.89 -81.88 -0.56 0.79 16 25 C -0.09 -1.14 9.52 36.01 0.34 -0.80 16 26 N -0.44 -4.61 3.09 -115.28 -0.36 -4.97 16 27 C 0.07 0.40 10.61 59.84 0.63 1.03 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.30 6.94 -51.93 -0.36 -0.06 16 31 H 0.14 1.36 7.70 -52.48 -0.40 0.96 16 32 H 0.39 4.95 7.60 -40.82 -0.31 4.64 16 33 H 0.07 1.08 6.29 -51.93 -0.33 0.76 16 34 H 0.06 0.79 7.86 -51.93 -0.41 0.39 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.25 6.92 -51.93 -0.36 0.89 16 37 H 0.07 1.33 7.99 -51.93 -0.42 0.92 16 38 H 0.03 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 40 H 0.03 0.57 6.89 -51.93 -0.36 0.21 16 41 H 0.04 1.06 3.39 -51.93 -0.18 0.88 16 42 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 43 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.54 6.92 -51.93 -0.36 0.18 16 46 H 0.10 1.56 6.47 -51.93 -0.34 1.22 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.34 6.90 -51.93 -0.36 -0.02 16 49 H 0.09 0.43 6.88 -51.93 -0.36 0.08 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -35.90 374.02 -8.45 -44.35 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.81 Total: 3.53 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.83 Total: -1.11 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.23 Total: -59.32 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.29 Total: 18.71 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.90 -8.45 -44.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052923590.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.010 kcal (2) G-P(sol) polarization free energy of solvation -35.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds