Wall clock time and date at job start Sat Apr 11 2020 00:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34488 * 125.57331 * 2 1 4 4 C 1.46679 * 106.33202 * 179.97438 * 3 2 1 5 5 C 1.47263 * 126.94246 * 179.97438 * 4 3 2 6 6 O 1.21627 * 120.00380 * 180.02562 * 5 4 3 7 7 N 1.34781 * 119.99796 * 0.02789 * 5 4 3 8 8 C 1.46498 * 120.00107 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.49067 * 325.04408 * 8 7 5 10 10 C 1.52567 * 109.48890 * 204.99732 * 8 7 5 11 11 C 1.47095 * 114.32313 * 155.02178 * 10 8 7 12 12 C 1.54861 * 110.32672 * 62.80181 * 11 10 8 13 13 N 1.44586 * 109.60117 * 288.73455 * 12 11 10 14 14 C 1.36937 * 118.63915 * 270.70818 * 13 12 11 15 15 H 1.07998 * 120.00010 * 185.65411 * 14 13 12 16 16 C 1.38815 * 120.00231 * 5.37129 * 14 13 12 17 17 N 1.31614 * 119.99649 * 26.49513 * 16 14 13 18 18 Si 1.86801 * 119.99959 * 206.49173 * 16 14 13 19 19 H 1.48498 * 109.46984 * 95.00266 * 18 16 14 20 20 H 1.48504 * 109.46848 * 214.99799 * 18 16 14 21 21 H 1.48497 * 109.47221 * 334.99983 * 18 16 14 22 22 C 1.47597 * 122.71497 * 90.97650 * 13 12 11 23 23 C 1.50887 * 109.49325 * 85.10754 * 8 7 5 24 24 C 1.36764 * 106.11901 * 0.23987 * 4 3 2 25 25 C 1.50710 * 125.80406 * 179.72252 * 24 4 3 26 26 N 1.34659 * 108.39662 * 359.60669 * 24 4 3 27 27 C 1.46503 * 124.85488 * 180.17969 * 26 24 4 28 28 H 1.08998 * 109.47056 * 90.02892 * 1 2 3 29 29 H 1.09006 * 109.46933 * 210.02718 * 1 2 3 30 30 H 1.08998 * 109.47069 * 330.02929 * 1 2 3 31 31 H 1.07999 * 126.83026 * 359.95312 * 3 2 1 32 32 H 0.97001 * 119.99939 * 359.97438 * 7 5 4 33 33 H 1.08997 * 108.51325 * 33.76683 * 10 8 7 34 34 H 1.08998 * 108.51239 * 276.27381 * 10 8 7 35 35 H 1.08998 * 109.33260 * 302.53676 * 11 10 8 36 36 H 1.09004 * 109.18509 * 182.97225 * 11 10 8 37 37 H 1.08996 * 109.45404 * 168.69271 * 12 11 10 38 38 H 1.09002 * 109.44903 * 48.76565 * 12 11 10 39 39 H 0.97006 * 119.99814 * 179.97438 * 17 16 14 40 40 H 1.09002 * 108.94467 * 78.30372 * 22 13 12 41 41 H 1.08999 * 108.94825 * 196.92553 * 22 13 12 42 42 H 1.08997 * 109.36336 * 332.05049 * 23 8 7 43 43 H 1.09001 * 109.36262 * 91.66010 * 23 8 7 44 44 H 1.08999 * 109.46916 * 90.02452 * 25 24 4 45 45 H 1.08998 * 109.47120 * 210.02431 * 25 24 4 46 46 H 1.08994 * 109.46821 * 330.02166 * 25 24 4 47 47 H 1.08999 * 109.47204 * 270.29222 * 27 26 24 48 48 H 1.09002 * 109.46834 * 30.28793 * 27 26 24 49 49 H 1.08991 * 109.47331 * 150.29029 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6105 0.0006 5 6 4.8978 1.4301 0.0003 6 8 5.9893 0.8935 0.0005 7 7 4.8080 2.7749 0.0000 8 6 6.0251 3.5903 -0.0009 9 1 6.7963 3.0932 0.5876 10 6 5.7228 4.9567 0.6066 11 6 6.8921 5.6330 1.1889 12 6 7.9456 5.9258 0.0922 13 7 8.5657 4.6888 -0.3272 14 6 9.6816 4.2556 0.3379 15 1 10.2155 3.3850 -0.0132 16 6 10.1298 4.9388 1.4601 17 7 9.2821 5.6306 2.1915 18 14 11.9362 4.8763 1.9320 19 1 12.6360 6.0590 1.3692 20 1 12.0617 4.8846 3.4117 21 1 12.5466 3.6357 1.3903 22 6 8.0491 3.8768 -1.4462 23 6 6.5102 3.7693 -1.4184 24 6 3.5998 -0.7551 -0.0045 25 6 4.7722 -1.7020 -0.0119 26 7 2.3008 -1.1099 0.0007 27 6 1.8098 -2.4902 0.0013 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5134 31 1 1.9629 2.1233 -0.0007 32 1 3.9375 3.2029 -0.0005 33 1 4.9721 4.8302 1.3867 34 1 5.3046 5.5962 -0.1707 35 1 7.3348 4.9943 1.9531 36 1 6.5738 6.5714 1.6430 37 1 8.7068 6.5968 0.4900 38 1 7.4588 6.3956 -0.7625 39 1 9.5952 6.1078 2.9759 40 1 8.3586 4.3328 -2.3867 41 1 8.4753 2.8756 -1.3833 42 1 6.1965 2.9151 -2.0183 43 1 6.0792 4.6794 -1.8357 44 1 5.0578 -1.9347 1.0140 45 1 4.4942 -2.6204 -0.5289 46 1 5.6125 -1.2357 -0.5262 47 1 1.6886 -2.8332 -1.0262 48 1 2.5264 -3.1304 0.5159 49 1 0.8494 -2.5340 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052923591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:09:33 Heat of formation + Delta-G solvation = 38.194774 kcal Electronic energy + Delta-G solvation = -27847.063862 eV Core-core repulsion = 24196.781664 eV Total energy + Delta-G solvation = -3650.282198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.49665 -39.13168 -37.29409 -34.54822 -33.11779 -32.68228 -31.89655 -31.68870 -29.64627 -29.21591 -26.94661 -25.84359 -24.87862 -23.78207 -22.95000 -21.62621 -19.94407 -19.87704 -18.98688 -18.49863 -16.88645 -16.42883 -15.93716 -15.58250 -15.30201 -15.11746 -14.36291 -14.22339 -13.84713 -13.57063 -13.52374 -13.46477 -13.14037 -13.06749 -13.02697 -12.63479 -12.56993 -12.40364 -12.35356 -11.95307 -11.84974 -11.79058 -11.48057 -11.40123 -11.04871 -10.69375 -10.53537 -10.17386 -9.87747 -9.72397 -9.64579 -9.57573 -9.22686 -9.11856 -8.67535 -8.42342 -8.11834 -7.98433 -6.70381 -5.58669 -2.89977 1.87671 2.33121 2.65473 3.50392 3.58257 3.59561 3.86021 3.93709 4.45759 4.55775 4.64689 4.73052 4.78419 4.93703 5.07404 5.18651 5.27042 5.34142 5.45044 5.53492 5.55668 5.58789 5.63633 5.65820 5.83242 5.84328 6.01206 6.09918 6.21051 6.25598 6.29180 6.41655 6.63216 6.75986 6.78470 6.91490 6.97944 6.98500 7.03799 7.10674 7.16769 7.26880 7.35308 7.39086 7.83011 7.93434 8.15268 8.32312 8.52099 8.86944 9.44082 10.06171 10.45837 11.40489 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.003084 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.179706 B = 9078.329549 C = 9673.712921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.004 3.996 3 C -0.166 4.166 4 C -0.226 4.226 5 C 0.585 3.415 6 O -0.545 6.545 7 N -0.722 5.722 8 C 0.157 3.843 9 H 0.102 0.898 10 C -0.110 4.110 11 C -0.121 4.121 12 C 0.185 3.815 13 N -0.599 5.599 14 C -0.245 4.245 15 H 0.073 0.927 16 C -0.005 4.005 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.292 1.292 20 H -0.295 1.295 21 H -0.282 1.282 22 C 0.155 3.845 23 C -0.138 4.138 24 C 0.100 3.900 25 C -0.092 4.092 26 N -0.444 5.444 27 C 0.067 3.933 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.390 0.610 33 H 0.040 0.960 34 H 0.039 0.961 35 H 0.106 0.894 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.001 0.999 39 H 0.248 0.752 40 H 0.016 0.984 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.139 -11.958 -4.877 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.190 4.190 4 C -0.236 4.236 5 C 0.373 3.627 6 O -0.424 6.424 7 N -0.371 5.371 8 C 0.053 3.947 9 H 0.120 0.880 10 C -0.148 4.148 11 C -0.161 4.161 12 C 0.059 3.941 13 N -0.322 5.322 14 C -0.374 4.374 15 H 0.091 0.909 16 C -0.201 4.201 17 N -0.543 5.543 18 Si 0.722 3.278 19 H -0.219 1.219 20 H -0.222 1.222 21 H -0.208 1.208 22 C 0.028 3.972 23 C -0.178 4.178 24 C -0.016 4.016 25 C -0.150 4.150 26 N -0.122 5.122 27 C -0.075 4.075 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.223 0.777 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.019 0.981 39 H 0.059 0.941 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.122 0.878 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.464 -12.567 -4.754 23.651 hybrid contribution 0.201 0.213 0.357 0.461 sum -19.263 -12.354 -4.397 23.303 Atomic orbital electron populations 1.20298 0.88040 1.03059 1.02447 1.20150 0.93367 0.85628 1.11226 1.21775 0.91077 0.97484 1.08643 1.20266 0.93119 0.92232 1.17935 1.17307 0.87496 0.81937 0.75951 1.90758 1.28471 1.72327 1.50861 1.46110 1.09921 1.05788 1.75329 1.20456 0.85887 0.91402 0.96918 0.87965 1.20815 1.00329 0.94774 0.98918 1.21411 0.94062 0.99280 1.01384 1.20700 0.94430 0.87628 0.91373 1.44083 1.30730 1.22193 1.35153 1.19412 1.00244 1.10809 1.06900 0.90920 1.24654 0.97837 1.01323 0.96335 1.70315 1.30822 1.37216 1.15978 0.86396 0.86881 0.77580 0.76949 1.21907 1.22240 1.20768 1.21143 0.90529 0.95021 0.90464 1.22285 0.98869 1.00170 0.96449 1.20296 0.84417 0.94230 1.02645 1.20557 0.94809 0.96261 1.03342 1.43417 1.05193 1.06235 1.57354 1.22037 1.01403 0.80705 1.03305 0.91203 0.92015 0.90134 0.83929 0.77698 0.94081 0.94237 0.87624 0.94659 0.90336 0.98062 0.94128 0.96643 0.93049 0.92603 0.93128 0.90596 0.92289 0.87788 0.90867 0.89666 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.06 36.01 0.36 -0.17 16 2 C 0.00 0.04 6.85 -81.86 -0.56 -0.52 16 3 C -0.17 -2.05 10.45 -37.50 -0.39 -2.44 16 4 C -0.23 -3.45 6.29 -103.36 -0.65 -4.10 16 5 C 0.59 10.74 7.63 -12.59 -0.10 10.64 16 6 O -0.55 -11.90 14.48 5.25 0.08 -11.82 16 7 N -0.72 -12.34 4.93 -56.19 -0.28 -12.62 16 8 C 0.16 3.13 2.06 -69.21 -0.14 2.99 16 9 H 0.10 2.56 6.92 -51.93 -0.36 2.20 16 10 C -0.11 -2.13 4.69 -29.79 -0.14 -2.27 16 11 C -0.12 -2.77 4.77 -28.58 -0.14 -2.91 16 12 C 0.18 4.51 4.96 -4.08 -0.02 4.49 16 13 N -0.60 -15.25 2.29 -171.88 -0.39 -15.65 16 14 C -0.24 -6.85 9.58 -15.06 -0.14 -6.99 16 15 H 0.07 2.05 7.82 -52.49 -0.41 1.64 16 16 C -0.01 -0.15 4.84 -17.43 -0.08 -0.23 16 17 N -0.90 -25.22 8.06 55.49 0.45 -24.78 16 18 Si 0.89 22.26 29.63 -169.99 -5.04 17.22 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.15 3.45 6.28 -2.77 -0.02 3.43 16 23 C -0.14 -2.68 5.39 -27.12 -0.15 -2.83 16 24 C 0.10 1.34 6.89 -81.88 -0.56 0.78 16 25 C -0.09 -1.11 9.26 36.01 0.33 -0.78 16 26 N -0.44 -4.69 3.09 -115.27 -0.36 -5.04 16 27 C 0.07 0.41 10.39 59.85 0.62 1.03 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.32 6.94 -51.93 -0.36 -0.04 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.14 1.47 7.70 -52.49 -0.40 1.07 16 32 H 0.39 5.51 7.72 -40.82 -0.32 5.20 16 33 H 0.04 0.73 8.04 -51.93 -0.42 0.32 16 34 H 0.04 0.70 7.36 -51.93 -0.38 0.32 16 35 H 0.11 2.84 6.25 -51.93 -0.32 2.52 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 2.13 6.00 -51.93 -0.31 1.82 16 38 H 0.00 0.03 8.07 -51.93 -0.42 -0.39 16 39 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 1.19 7.80 -51.93 -0.41 0.79 16 42 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 43 H 0.05 0.92 7.32 -51.93 -0.38 0.54 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.53 7.59 -51.93 -0.39 0.13 16 46 H 0.10 1.52 6.47 -51.93 -0.34 1.19 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.44 7.51 -51.93 -0.39 0.05 16 49 H 0.08 0.36 6.90 -51.93 -0.36 0.00 16 LS Contribution 375.59 15.07 5.66 5.66 Total: -1.00 -32.59 375.59 -9.70 -42.30 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.05 Total: 4.60 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.78 Total: 0.13 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.58 Total: -58.09 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.04 Total: 17.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.59 -9.70 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052923591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.490 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds