Wall clock time and date at job start Sat Apr 11 2020 00:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34488 * 125.57331 * 2 1 4 4 C 1.46679 * 106.33202 * 179.97438 * 3 2 1 5 5 C 1.47263 * 126.94246 * 179.97438 * 4 3 2 6 6 O 1.21627 * 120.00380 * 180.02562 * 5 4 3 7 7 N 1.34781 * 119.99796 * 0.02789 * 5 4 3 8 8 C 1.46498 * 120.00107 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.49067 * 325.04408 * 8 7 5 10 10 C 1.52567 * 109.48890 * 204.99732 * 8 7 5 11 11 C 1.47095 * 114.32313 * 155.02178 * 10 8 7 12 12 C 1.54861 * 110.32672 * 62.80181 * 11 10 8 13 13 N 1.44586 * 109.60117 * 288.73455 * 12 11 10 14 14 C 1.36937 * 118.63915 * 270.70818 * 13 12 11 15 15 H 1.07998 * 120.00010 * 185.65411 * 14 13 12 16 16 C 1.38815 * 120.00231 * 5.37129 * 14 13 12 17 17 N 1.31614 * 119.99649 * 26.49513 * 16 14 13 18 18 Si 1.86801 * 119.99959 * 206.49173 * 16 14 13 19 19 H 1.48498 * 109.46984 * 95.00266 * 18 16 14 20 20 H 1.48504 * 109.46848 * 214.99799 * 18 16 14 21 21 H 1.48497 * 109.47221 * 334.99983 * 18 16 14 22 22 C 1.47597 * 122.71497 * 90.97650 * 13 12 11 23 23 C 1.50887 * 109.49325 * 85.10754 * 8 7 5 24 24 C 1.36764 * 106.11901 * 0.23987 * 4 3 2 25 25 C 1.50710 * 125.80406 * 179.72252 * 24 4 3 26 26 N 1.34659 * 108.39662 * 359.60669 * 24 4 3 27 27 C 1.46503 * 124.85488 * 180.17969 * 26 24 4 28 28 H 1.08998 * 109.47056 * 90.02892 * 1 2 3 29 29 H 1.09006 * 109.46933 * 210.02718 * 1 2 3 30 30 H 1.08998 * 109.47069 * 330.02929 * 1 2 3 31 31 H 1.07999 * 126.83026 * 359.95312 * 3 2 1 32 32 H 0.97001 * 119.99939 * 359.97438 * 7 5 4 33 33 H 1.08997 * 108.51325 * 33.76683 * 10 8 7 34 34 H 1.08998 * 108.51239 * 276.27381 * 10 8 7 35 35 H 1.08998 * 109.33260 * 302.53676 * 11 10 8 36 36 H 1.09004 * 109.18509 * 182.97225 * 11 10 8 37 37 H 1.08996 * 109.45404 * 168.69271 * 12 11 10 38 38 H 1.09002 * 109.44903 * 48.76565 * 12 11 10 39 39 H 0.97006 * 119.99814 * 179.97438 * 17 16 14 40 40 H 1.09002 * 108.94467 * 78.30372 * 22 13 12 41 41 H 1.08999 * 108.94825 * 196.92553 * 22 13 12 42 42 H 1.08997 * 109.36336 * 332.05049 * 23 8 7 43 43 H 1.09001 * 109.36262 * 91.66010 * 23 8 7 44 44 H 1.08999 * 109.46916 * 90.02452 * 25 24 4 45 45 H 1.08998 * 109.47120 * 210.02431 * 25 24 4 46 46 H 1.08994 * 109.46821 * 330.02166 * 25 24 4 47 47 H 1.08999 * 109.47204 * 270.29222 * 27 26 24 48 48 H 1.09002 * 109.46834 * 30.28793 * 27 26 24 49 49 H 1.08991 * 109.47331 * 150.29029 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6105 0.0006 5 6 4.8978 1.4301 0.0003 6 8 5.9893 0.8935 0.0005 7 7 4.8080 2.7749 0.0000 8 6 6.0251 3.5903 -0.0009 9 1 6.7963 3.0932 0.5876 10 6 5.7228 4.9567 0.6066 11 6 6.8921 5.6330 1.1889 12 6 7.9456 5.9258 0.0922 13 7 8.5657 4.6888 -0.3272 14 6 9.6816 4.2556 0.3379 15 1 10.2155 3.3850 -0.0132 16 6 10.1298 4.9388 1.4601 17 7 9.2821 5.6306 2.1915 18 14 11.9362 4.8763 1.9320 19 1 12.6360 6.0590 1.3692 20 1 12.0617 4.8846 3.4117 21 1 12.5466 3.6357 1.3903 22 6 8.0491 3.8768 -1.4462 23 6 6.5102 3.7693 -1.4184 24 6 3.5998 -0.7551 -0.0045 25 6 4.7722 -1.7020 -0.0119 26 7 2.3008 -1.1099 0.0007 27 6 1.8098 -2.4902 0.0013 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5134 31 1 1.9629 2.1233 -0.0007 32 1 3.9375 3.2029 -0.0005 33 1 4.9721 4.8302 1.3867 34 1 5.3046 5.5962 -0.1707 35 1 7.3348 4.9943 1.9531 36 1 6.5738 6.5714 1.6430 37 1 8.7068 6.5968 0.4900 38 1 7.4588 6.3956 -0.7625 39 1 9.5952 6.1078 2.9759 40 1 8.3586 4.3328 -2.3867 41 1 8.4753 2.8756 -1.3833 42 1 6.1965 2.9151 -2.0183 43 1 6.0792 4.6794 -1.8357 44 1 5.0578 -1.9347 1.0140 45 1 4.4942 -2.6204 -0.5289 46 1 5.6125 -1.2357 -0.5262 47 1 1.6886 -2.8332 -1.0262 48 1 2.5264 -3.1304 0.5159 49 1 0.8494 -2.5340 0.5147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052923591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:09:32 Heat of formation + Delta-G solvation = 18.959284 kcal Electronic energy + Delta-G solvation = -27847.897975 eV Core-core repulsion = 24196.781664 eV Total energy + Delta-G solvation = -3651.116311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.38998 -40.63849 -38.99940 -36.29245 -34.15328 -33.58041 -33.51411 -33.41171 -31.42524 -29.99242 -28.20469 -27.33139 -25.91189 -25.39098 -24.77277 -22.78270 -21.62431 -21.04410 -20.72900 -19.58872 -18.49355 -17.88540 -17.15418 -16.93520 -16.69470 -16.46240 -15.91936 -15.65870 -15.27548 -15.19810 -14.82309 -14.63761 -14.16252 -14.11324 -14.04531 -13.85267 -13.75031 -13.67665 -13.47034 -13.22782 -13.14997 -13.00002 -12.96404 -12.67663 -12.52402 -12.35683 -12.29647 -12.09391 -11.81044 -11.66225 -11.45780 -11.35609 -11.03046 -10.71574 -10.25298 -9.98702 -9.48299 -8.92215 -8.73871 -7.72355 -5.05202 0.78087 1.45987 1.47674 1.50141 1.57987 1.87255 2.51642 2.56971 2.64201 3.28697 3.72692 3.82495 3.86805 3.89493 3.96388 4.19089 4.20409 4.33173 4.39417 4.42842 4.52017 4.54587 4.60307 4.63512 4.70027 4.72592 4.75145 4.85637 4.90289 4.93172 4.98847 5.06424 5.14144 5.16568 5.24735 5.28364 5.31463 5.42072 5.47845 5.54285 5.66144 5.76331 5.85464 5.91414 6.14333 6.35661 6.39124 6.41154 6.81983 7.30622 7.50199 8.03258 8.35025 9.23272 Molecular weight = 319.20amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.003084 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.179706 B = 9078.329549 C = 9673.712921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.184 4.184 4 C -0.264 4.264 5 C 0.578 3.422 6 O -0.593 6.593 7 N -0.711 5.711 8 C 0.169 3.831 9 H 0.045 0.955 10 C -0.104 4.104 11 C -0.108 4.108 12 C 0.187 3.813 13 N -0.610 5.610 14 C -0.264 4.264 15 H 0.060 0.940 16 C -0.047 4.047 17 N -0.907 5.907 18 Si 0.950 3.050 19 H -0.288 1.288 20 H -0.297 1.297 21 H -0.281 1.281 22 C 0.153 3.847 23 C -0.125 4.125 24 C 0.089 3.911 25 C -0.088 4.088 26 N -0.439 5.439 27 C 0.056 3.944 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.158 0.842 32 H 0.408 0.592 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.026 0.974 39 H 0.244 0.756 40 H 0.032 0.968 41 H 0.028 0.972 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.503 -12.574 -5.672 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C -0.208 4.208 4 C -0.274 4.274 5 C 0.369 3.631 6 O -0.476 6.476 7 N -0.361 5.361 8 C 0.064 3.936 9 H 0.063 0.937 10 C -0.142 4.142 11 C -0.149 4.149 12 C 0.062 3.938 13 N -0.333 5.333 14 C -0.394 4.394 15 H 0.078 0.922 16 C -0.242 4.242 17 N -0.554 5.554 18 Si 0.780 3.220 19 H -0.215 1.215 20 H -0.224 1.224 21 H -0.206 1.206 22 C 0.027 3.973 23 C -0.165 4.165 24 C -0.029 4.029 25 C -0.145 4.145 26 N -0.115 5.115 27 C -0.084 4.084 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.176 0.824 32 H 0.244 0.756 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.112 0.888 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.888 -13.185 -5.564 26.993 hybrid contribution 1.194 0.305 0.606 1.373 sum -21.694 -12.880 -4.958 25.712 Atomic orbital electron populations 1.20436 0.84800 1.04566 1.03764 1.20798 0.95188 0.84948 1.08544 1.22005 0.89755 0.99107 1.09918 1.20191 0.93075 0.93075 1.21015 1.17883 0.88096 0.82272 0.74865 1.90730 1.30568 1.73146 1.53139 1.45872 1.09760 1.05438 1.75030 1.20054 0.85754 0.91466 0.96323 0.93717 1.20662 0.99117 0.94271 1.00174 1.21133 0.94781 0.99011 0.99936 1.20614 0.94004 0.86778 0.92448 1.44211 1.30688 1.22845 1.35568 1.19526 1.01555 1.10858 1.07413 0.92239 1.25263 1.00832 1.01627 0.96503 1.70496 1.31588 1.37477 1.15862 0.85496 0.82838 0.77450 0.76238 1.21494 1.22436 1.20640 1.21221 0.92506 0.93529 0.89998 1.22149 0.96565 1.01457 0.96288 1.20425 0.86041 0.93919 1.02472 1.20468 0.93615 0.97190 1.03244 1.43716 1.04075 1.08143 1.55564 1.22425 1.02719 0.78281 1.04949 0.89834 0.90044 0.89149 0.82405 0.75625 0.92440 0.91188 0.92075 0.93854 0.93509 0.95630 0.94585 0.95051 0.95354 0.92262 0.90607 0.90720 0.88984 0.91073 0.89220 0.88799 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.06 71.24 0.72 0.02 16 2 C 0.01 0.25 6.85 40.98 0.28 0.53 16 3 C -0.18 -4.25 10.45 23.62 0.25 -4.00 16 4 C -0.26 -8.07 6.29 -19.04 -0.12 -8.19 16 5 C 0.58 22.01 7.63 86.62 0.66 22.67 16 6 O -0.59 -27.70 14.48 -4.12 -0.06 -27.76 16 7 N -0.71 -24.35 4.93 -449.92 -2.22 -26.57 16 8 C 0.17 6.83 2.06 44.16 0.09 6.92 16 9 H 0.04 2.37 6.92 -2.38 -0.02 2.35 16 10 C -0.10 -3.90 4.69 28.61 0.13 -3.77 16 11 C -0.11 -4.98 4.77 29.39 0.14 -4.84 16 12 C 0.19 9.20 4.96 87.37 0.43 9.63 16 13 N -0.61 -31.91 2.29 -697.70 -1.60 -33.51 16 14 C -0.26 -15.37 9.58 84.03 0.81 -14.56 16 15 H 0.06 3.53 7.82 -2.91 -0.02 3.51 16 16 C -0.05 -2.71 4.84 84.86 0.41 -2.30 16 17 N -0.91 -52.68 8.06 21.65 0.17 -52.51 16 18 Si 0.95 47.12 29.63 68.60 2.03 49.15 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 21 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 22 C 0.15 6.96 6.28 86.61 0.54 7.50 16 23 C -0.12 -4.80 5.39 30.34 0.16 -4.64 16 24 C 0.09 2.35 6.89 41.78 0.29 2.64 16 25 C -0.09 -2.14 9.26 71.24 0.66 -1.48 16 26 N -0.44 -8.16 3.09 -518.62 -1.60 -9.76 16 27 C 0.06 0.48 10.39 127.77 1.33 1.81 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.43 6.94 -2.38 -0.02 0.42 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.16 2.92 7.70 -2.91 -0.02 2.90 16 32 H 0.41 10.99 7.72 -92.71 -0.72 10.27 16 33 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 34 H 0.07 2.25 7.36 -2.39 -0.02 2.23 16 35 H 0.06 3.41 6.25 -2.39 -0.01 3.39 16 36 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.05 2.59 6.00 -2.39 -0.01 2.57 16 38 H 0.03 1.12 8.07 -2.39 -0.02 1.10 16 39 H 0.24 13.88 8.31 -92.70 -0.77 13.11 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.03 1.38 7.80 -2.39 -0.02 1.36 16 42 H 0.06 2.24 7.85 -2.39 -0.02 2.22 16 43 H 0.08 2.56 7.32 -2.39 -0.02 2.54 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.09 1.53 7.59 -2.39 -0.02 1.51 16 46 H 0.07 2.24 6.47 -2.39 -0.02 2.22 16 47 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.09 0.67 7.51 -2.39 -0.02 0.65 16 49 H 0.11 0.42 6.90 -2.39 -0.02 0.40 16 Total: -1.00 -75.83 375.59 3.75 -72.08 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.23 Total: 20.95 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 6.78 Total: 7.93 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -5.24 Total: -122.35 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.06 Total: -27.76 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -75.83 3.75 -72.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052923591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.043 kcal (2) G-P(sol) polarization free energy of solvation -75.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds