Wall clock time and date at job start Sat Apr 11 2020 00:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52998 * 109.46962 * 311.26370 * 3 2 1 5 5 N 1.46507 * 109.46895 * 180.02562 * 4 3 2 6 6 C 1.46496 * 119.99761 * 269.99814 * 5 4 3 7 7 C 1.50709 * 109.47287 * 270.00195 * 6 5 4 8 8 H 1.07999 * 119.99469 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99978 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00390 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99953 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47100 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47422 * 119.99613 * 11 9 7 14 14 H 1.48504 * 109.47111 * 239.99827 * 11 9 7 15 15 C 1.34776 * 120.00267 * 89.99998 * 5 4 3 16 16 O 1.21281 * 120.00199 * 180.02562 * 15 5 4 17 17 C 1.50700 * 119.99763 * 359.97438 * 15 5 4 18 18 C 1.53000 * 109.47104 * 180.02562 * 17 15 5 19 19 C 1.50700 * 109.47104 * 179.97438 * 18 17 15 20 20 C 1.38239 * 119.98824 * 270.29704 * 19 18 17 21 21 C 1.38212 * 120.01553 * 180.25745 * 20 19 18 22 22 C 1.38361 * 119.98341 * 359.46433 * 21 20 19 23 23 Cl 1.73597 * 120.00859 * 180.27890 * 22 21 20 24 24 C 1.38346 * 119.97306 * 0.25744 * 22 21 20 25 25 C 1.38210 * 119.98768 * 0.02562 * 24 22 21 26 26 H 1.08998 * 109.46891 * 191.26086 * 3 2 1 27 27 H 1.09004 * 109.47439 * 71.26567 * 3 2 1 28 28 H 1.09000 * 109.47327 * 60.00604 * 4 3 2 29 29 H 1.08996 * 109.47354 * 299.99746 * 4 3 2 30 30 H 1.09006 * 109.47580 * 30.00320 * 6 5 4 31 31 H 1.09004 * 109.47297 * 150.00257 * 6 5 4 32 32 H 0.96992 * 120.00420 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.47421 * 59.99852 * 17 15 5 34 34 H 1.09000 * 109.47406 * 300.00366 * 17 15 5 35 35 H 1.08993 * 109.47106 * 59.99994 * 18 17 15 36 36 H 1.08996 * 109.46854 * 299.99652 * 18 17 15 37 37 H 1.08004 * 119.99430 * 359.97438 * 20 19 18 38 38 H 1.08002 * 120.01126 * 179.75014 * 21 20 19 39 39 H 1.08002 * 120.00348 * 180.02562 * 24 22 21 40 40 H 1.08002 * 119.99295 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9505 1.0843 5 7 4.5834 -0.9493 1.0847 6 6 5.3168 -1.9024 0.2480 7 6 5.5687 -3.1664 1.0290 8 1 5.2180 -3.2511 2.0469 9 6 6.2479 -4.2142 0.4443 10 7 6.6755 -4.1109 -0.7951 11 14 6.5607 -5.7807 1.4126 12 1 5.9832 -5.6449 2.7739 13 1 5.9246 -6.9282 0.7169 14 1 8.0236 -6.0143 1.5170 15 6 5.2565 -0.0716 1.8548 16 8 6.4693 -0.0704 1.8547 17 6 4.5020 0.9091 2.7150 18 6 5.4954 1.7842 3.4820 19 6 4.7409 2.7653 4.3418 20 6 4.3896 4.0020 3.8335 21 6 3.7023 4.9043 4.6233 22 6 3.3561 4.5653 5.9193 23 17 2.4865 5.6954 6.9094 24 6 3.7029 3.3254 6.4255 25 6 4.3953 2.4262 5.6367 26 1 2.9708 1.0087 0.2007 27 1 2.9715 -0.3293 -0.9732 28 1 2.7556 -1.9585 0.8835 29 1 2.7549 -0.6206 2.0575 30 1 4.7282 -2.1348 -0.6395 31 1 6.2691 -1.4648 -0.0520 32 1 7.1529 -4.8481 -1.2065 33 1 3.8752 0.3653 3.4218 34 1 3.8753 1.5391 2.0838 35 1 6.1218 2.3280 2.7750 36 1 6.1223 1.1545 4.1133 37 1 4.6563 4.2649 2.8205 38 1 3.4315 5.8719 4.2274 39 1 3.4326 3.0602 7.4369 40 1 4.6665 1.4584 6.0319 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299285651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:11:58 Heat of formation + Delta-G solvation = -23.289325 kcal Electronic energy + Delta-G solvation = -23271.996134 eV Core-core repulsion = 19690.372099 eV Total energy + Delta-G solvation = -3581.624035 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89846 -40.13807 -37.97352 -37.47232 -36.66372 -35.02392 -34.55024 -32.12585 -31.95751 -30.77528 -28.95380 -26.00229 -25.26696 -23.96226 -23.73357 -21.86724 -19.80311 -18.79423 -18.30835 -18.15446 -17.63990 -17.04861 -16.78177 -16.23974 -15.96741 -15.91854 -15.62280 -14.88695 -14.67845 -14.49189 -14.38604 -14.34503 -14.12544 -13.71330 -13.61330 -13.50170 -13.35914 -13.02254 -12.90450 -12.67534 -12.53432 -12.50954 -12.21489 -12.12074 -12.09886 -11.97426 -11.74641 -11.62932 -11.59893 -10.57505 -10.51189 -9.94208 -9.46844 -9.42465 -8.16326 -6.28302 0.19493 0.39431 1.20921 1.40198 1.42876 1.53045 1.72168 1.86895 1.97048 2.33611 2.47126 2.71462 3.13789 3.18601 3.71171 3.86735 4.02409 4.06296 4.11313 4.15867 4.24209 4.35603 4.46629 4.49677 4.63024 4.71812 4.81986 4.87944 4.98101 5.09780 5.13030 5.18674 5.30768 5.32518 5.32599 5.38344 5.64650 5.69409 5.90382 5.92061 6.15714 6.63431 6.78811 6.86764 7.37318 7.58261 8.90432 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.002816 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.538914 B = 9939.990029 C =11114.320382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.114 3.886 5 N -0.599 5.599 6 C 0.258 3.742 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.010 3.990 10 N -0.927 5.927 11 Si 0.957 3.043 12 H -0.267 1.267 13 H -0.275 1.275 14 H -0.285 1.285 15 C 0.501 3.499 16 O -0.590 6.590 17 C -0.124 4.124 18 C -0.062 4.062 19 C -0.074 4.074 20 C -0.104 4.104 21 C -0.113 4.113 22 C -0.053 4.053 23 Cl -0.079 7.079 24 C -0.114 4.114 25 C -0.109 4.109 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.032 0.968 31 H 0.004 0.996 32 H 0.265 0.735 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 17.637 10.825 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.011 4.011 5 N -0.330 5.330 6 C 0.137 3.863 7 C -0.576 4.576 8 H 0.072 0.928 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.782 3.218 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.212 1.212 15 C 0.291 3.709 16 O -0.471 6.471 17 C -0.163 4.163 18 C -0.100 4.100 19 C -0.074 4.074 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.079 4.079 23 Cl -0.050 7.050 24 C -0.133 4.133 25 C -0.128 4.128 26 H 0.157 0.843 27 H 0.137 0.863 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.050 0.950 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.175 17.629 10.767 22.603 hybrid contribution 0.866 -1.107 0.222 1.423 sum -8.309 16.522 10.990 21.513 Atomic orbital electron populations 1.81256 1.14487 1.10690 1.10472 1.29187 0.94988 0.91418 0.91557 1.19853 0.79972 1.04596 1.03505 1.21505 0.79137 1.00687 0.99759 1.48112 1.06693 1.34302 1.43873 1.18799 0.91507 0.86245 0.89798 1.21793 1.36012 1.00155 0.99603 0.92809 1.25724 0.95351 1.01965 0.95883 1.70026 1.39245 1.33454 1.13969 0.85525 0.77668 0.79517 0.79048 1.19120 1.20040 1.21151 1.21353 0.87766 0.81602 0.80213 1.90672 1.16646 1.72669 1.67075 1.21753 0.98898 0.96656 0.99027 1.20258 0.96332 0.95674 0.97701 1.20011 0.97673 0.95173 0.94563 1.21276 0.97538 0.92551 1.00848 1.21260 0.98733 1.01126 0.92001 1.21120 1.00987 0.92424 0.93386 1.98366 1.75335 1.61232 1.70080 1.21215 0.98817 0.92028 1.01217 1.21251 0.97846 1.00087 0.93575 0.84306 0.86311 0.90132 0.87444 0.94962 0.97754 0.92637 0.87221 0.85829 0.90486 0.91551 0.83196 0.83615 0.83966 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.33 18.54 20.01 0.37 -12.96 16 2 C 0.25 5.13 15.43 89.44 1.38 6.52 16 3 C -0.04 -0.64 6.03 28.79 0.17 -0.47 16 4 C 0.11 2.61 5.17 86.38 0.45 3.06 16 5 N -0.60 -20.37 2.46 -826.13 -2.03 -22.40 16 6 C 0.26 12.14 5.16 85.64 0.44 12.58 16 7 C -0.54 -28.46 9.39 25.60 0.24 -28.22 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.01 0.53 5.46 84.65 0.46 0.99 16 10 N -0.93 -53.27 13.29 21.45 0.28 -52.98 16 11 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 15 C 0.50 16.68 7.67 87.66 0.67 17.35 16 16 O -0.59 -26.31 15.56 -3.03 -0.05 -26.36 16 17 C -0.12 -2.49 4.23 29.85 0.13 -2.36 16 18 C -0.06 -1.27 4.63 29.85 0.14 -1.14 16 19 C -0.07 -1.25 5.13 -19.86 -0.10 -1.36 16 20 C -0.10 -1.54 9.70 22.26 0.22 -1.32 16 21 C -0.11 -1.68 9.83 22.29 0.22 -1.46 16 22 C -0.05 -0.88 6.32 22.32 0.14 -0.73 16 23 Cl -0.08 -1.28 28.96 -2.72 -0.08 -1.36 16 24 C -0.11 -1.83 9.83 22.29 0.22 -1.61 16 25 C -0.11 -1.79 9.70 22.26 0.22 -1.58 16 26 H 0.14 1.52 7.22 -2.39 -0.02 1.50 16 27 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.11 1.83 6.44 -2.39 -0.02 1.81 16 30 H 0.03 1.51 8.07 -2.38 -0.02 1.49 16 31 H 0.00 0.24 7.42 -2.38 -0.02 0.22 16 32 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.11 1.85 7.40 -2.38 -0.02 1.83 16 34 H 0.12 1.63 7.19 -2.39 -0.02 1.62 16 35 H 0.08 1.69 8.04 -2.39 -0.02 1.67 16 36 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -72.12 367.74 6.57 -65.55 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 1.05 Total: 5.10 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 4.99 Total: 0.25 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -1.37 Total: -88.34 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -72.12 6.57 -65.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299285651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.263 kcal (2) G-P(sol) polarization free energy of solvation -72.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds