Wall clock time and date at job start Sat Apr 11 2020 00:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47343 * 2 1 4 4 N 1.29378 * 124.81314 * 89.99749 * 3 2 1 5 5 C 1.31037 * 117.34662 * 180.02562 * 4 3 2 6 6 C 1.50706 * 122.89323 * 180.02562 * 5 4 3 7 7 C 1.35514 * 114.20681 * 0.02562 * 5 4 3 8 8 C 1.47112 * 126.12479 * 180.02562 * 7 5 4 9 9 O 1.21984 * 120.00031 * 359.97438 * 8 7 5 10 10 N 1.34015 * 120.00346 * 179.97438 * 8 7 5 11 11 C 1.32892 * 120.00456 * 179.97438 * 10 8 7 12 12 C 1.41205 * 126.38152 * 0.03256 * 11 10 8 13 13 C 1.34980 * 108.24700 * 179.73183 * 12 11 10 14 14 N 1.36464 * 108.95465 * 0.02562 * 13 12 11 15 15 C 1.46494 * 125.84853 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47548 * 85.02229 * 15 14 13 17 17 H 1.08003 * 119.99657 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00264 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00071 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99913 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47284 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47145 * 119.99828 * 20 18 16 23 23 H 1.48498 * 109.47071 * 239.99966 * 20 18 16 24 24 N 1.37484 * 126.38435 * 179.71499 * 11 10 8 25 25 H 0.97003 * 126.36460 * 0.24214 * 24 11 10 26 26 S 1.70951 * 124.81077 * 270.31867 * 3 2 1 27 27 H 1.08994 * 109.47101 * 59.99672 * 1 2 3 28 28 H 1.09000 * 109.47806 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47128 * 300.00180 * 1 2 3 30 30 H 1.08994 * 109.46960 * 239.99700 * 2 1 3 31 31 H 1.09004 * 109.46950 * 119.99828 * 2 1 3 32 32 H 1.08997 * 109.47316 * 269.96009 * 6 5 4 33 33 H 1.08996 * 109.47065 * 29.96288 * 6 5 4 34 34 H 1.09007 * 109.46418 * 149.96022 * 6 5 4 35 35 H 1.08002 * 125.87581 * 359.73239 * 12 11 10 36 36 H 1.07991 * 125.52386 * 179.97438 * 13 12 11 37 37 H 1.09007 * 109.47062 * 205.02623 * 15 14 13 38 38 H 1.09005 * 109.47009 * 325.01750 * 15 14 13 39 39 H 0.96996 * 120.00053 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2786 2.1171 1.0622 5 6 2.7112 3.3422 0.8919 6 6 3.0370 4.2622 2.0403 7 6 2.8404 3.7106 -0.4058 8 6 3.3028 5.0190 -0.8940 9 8 3.6118 5.8919 -0.1000 10 7 3.3847 5.2520 -2.2112 11 6 3.8020 6.4341 -2.6523 12 6 4.1914 7.5346 -1.8580 13 6 4.5531 8.5423 -2.6801 14 7 4.4104 8.1319 -3.9737 15 6 4.7003 8.9336 -5.1650 16 6 6.1662 8.8271 -5.4979 17 1 6.8170 8.2230 -4.8831 18 6 6.6766 9.5009 -6.5871 19 7 5.8840 10.2361 -7.3360 20 14 8.4938 9.3694 -6.9992 21 1 9.1632 8.4871 -6.0098 22 1 8.6526 8.7963 -8.3600 23 1 9.1101 10.7198 -6.9557 24 7 3.9406 6.8114 -3.9671 25 1 3.7489 6.2652 -4.7455 26 16 2.3504 2.3434 -1.4036 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1468 4.8268 2.3174 33 1 3.3739 3.6733 2.8934 34 1 3.8261 4.9519 1.7406 35 1 4.1987 7.5649 -0.7784 36 1 4.8985 9.5158 -2.3651 37 1 4.1095 8.5649 -6.0037 38 1 4.4462 9.9759 -4.9722 39 1 6.2430 10.7099 -8.1025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344269441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:11:42 Heat of formation + Delta-G solvation = 97.520663 kcal Electronic energy + Delta-G solvation = -23106.329533 eV Core-core repulsion = 19564.280670 eV Total energy + Delta-G solvation = -3542.048863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94712 -39.92565 -38.24052 -34.51453 -34.16149 -33.06013 -31.21301 -30.90126 -30.64124 -28.29540 -26.64075 -25.46376 -23.55295 -22.33667 -21.86519 -21.41650 -20.41938 -18.40004 -17.74667 -17.12564 -16.74019 -15.60075 -15.54483 -15.21415 -14.99001 -14.76447 -14.56249 -14.25710 -14.00494 -13.57193 -13.39641 -13.07340 -12.91764 -12.88131 -12.57224 -12.31897 -12.03760 -11.90404 -11.80243 -11.41574 -11.36123 -11.13185 -11.05439 -10.59417 -10.48687 -9.81139 -9.66507 -9.39791 -9.20919 -9.15921 -8.98489 -8.54263 -8.46893 -7.08535 -6.56845 -4.72316 0.48289 1.47320 1.62968 1.93747 1.98598 2.69963 3.00692 3.08618 3.10799 3.15484 3.97074 4.02387 4.14225 4.42818 4.73396 4.76348 4.79828 4.97202 5.00540 5.14127 5.34592 5.41839 5.56867 5.70197 5.71347 5.85907 5.86890 5.92257 6.03312 6.05820 6.33213 6.41045 6.46941 6.54726 6.65337 7.29635 7.34914 7.43961 7.49232 7.78524 7.86622 8.10628 8.36718 8.98866 9.13976 10.46413 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.024149 B = 0.002464 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.179945 B =11359.584947 C =11846.588037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C 0.025 3.975 4 N -0.479 5.479 5 C 0.113 3.887 6 C -0.082 4.082 7 C -0.240 4.240 8 C 0.569 3.431 9 O -0.565 6.565 10 N -0.695 5.695 11 C 0.472 3.528 12 C -0.332 4.332 13 C 0.165 3.835 14 N -0.338 5.338 15 C 0.253 3.747 16 C -0.559 4.559 17 H 0.071 0.929 18 C 0.070 3.930 19 N -0.886 5.886 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.278 1.278 24 N -0.464 5.464 25 H 0.446 0.554 26 S 0.196 5.804 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 -11.907 9.107 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.251 4.251 4 N -0.194 5.194 5 C -0.024 4.024 6 C -0.141 4.141 7 C -0.365 4.365 8 C 0.354 3.646 9 O -0.447 6.447 10 N -0.460 5.460 11 C 0.222 3.778 12 C -0.364 4.364 13 C 0.019 3.981 14 N -0.122 5.122 15 C 0.136 3.864 16 C -0.597 4.597 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.203 1.203 24 N -0.186 5.186 25 H 0.294 0.706 26 S 0.454 5.546 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.202 0.798 36 H 0.207 0.793 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.704 -12.333 7.844 16.522 hybrid contribution 1.251 0.753 0.246 1.480 sum -6.453 -11.580 8.090 15.531 Atomic orbital electron populations 1.21775 0.93635 1.02352 1.02770 1.20185 0.96608 0.87737 1.04068 1.27325 1.03072 1.01913 0.92769 1.66033 1.15572 1.05912 1.31891 1.20597 0.97173 0.90774 0.93881 1.20559 1.03347 0.96871 0.93301 1.25316 1.14549 1.00713 0.95887 1.17458 0.77468 0.84384 0.85290 1.90608 1.49480 1.44451 1.60208 1.68800 1.41366 1.19202 1.16584 1.19051 0.85752 0.90703 0.82303 1.22454 1.18054 0.93483 1.02394 1.22889 0.93152 1.00160 0.81895 1.48144 1.54785 1.00448 1.08871 1.20126 0.98088 0.89438 0.78702 1.21428 0.92477 1.32249 1.13576 0.91126 1.24958 0.99350 0.94085 0.95107 1.69899 1.35921 1.29371 1.17018 0.86232 0.83119 0.78397 0.78621 1.19369 1.20472 1.20338 1.44614 1.61141 1.05149 1.07715 0.70641 1.83958 1.57321 1.03415 1.09897 0.92292 0.91516 0.92004 0.89701 0.89025 0.90862 0.91577 0.88195 0.79819 0.79306 0.92945 0.91202 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.05 -0.40 6.51 -27.89 -0.18 -0.58 16 3 C 0.02 0.32 6.64 -13.31 -0.09 0.23 16 4 N -0.48 -7.33 10.50 -7.73 -0.08 -7.41 16 5 C 0.11 1.86 6.79 -83.90 -0.57 1.29 16 6 C -0.08 -1.19 9.70 36.01 0.35 -0.84 16 7 C -0.24 -4.20 6.49 -36.96 -0.24 -4.44 16 8 C 0.57 11.19 7.71 -13.00 -0.10 11.09 16 9 O -0.56 -11.51 11.20 4.93 0.06 -11.45 16 10 N -0.70 -13.54 10.36 -12.38 -0.13 -13.67 16 11 C 0.47 8.84 8.07 -155.27 -1.25 7.59 16 12 C -0.33 -5.87 9.52 -39.61 -0.38 -6.25 16 13 C 0.17 2.64 11.45 -16.65 -0.19 2.45 16 14 N -0.34 -6.00 3.63 -62.24 -0.23 -6.22 16 15 C 0.25 5.07 6.19 -5.20 -0.03 5.04 16 16 C -0.56 -12.95 9.39 -34.44 -0.32 -13.27 16 17 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 18 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -22.05 13.29 55.43 0.74 -21.31 16 20 Si 0.91 18.93 29.54 -169.99 -5.02 13.91 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 N -0.46 -7.99 7.38 31.34 0.23 -7.76 16 25 H 0.45 6.75 8.96 -182.55 -1.64 5.12 16 26 S 0.20 2.76 22.99 -107.50 -2.47 0.29 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.59 6.01 -51.92 -0.31 1.28 16 35 H 0.18 3.36 5.77 -52.49 -0.30 3.06 16 36 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 37 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 LS Contribution 352.22 15.07 5.31 5.31 Total: -1.00 -28.80 352.22 -10.36 -39.16 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.02 Total: 6.04 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -2.74 Total: 3.12 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.53 Total: -56.37 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.06 Total: -11.45 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.47 Total: 0.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.80 -10.36 -39.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344269441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.680 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds