Wall clock time and date at job start Sat Apr 11 2020 00:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47343 * 2 1 4 4 N 1.29378 * 124.81314 * 89.99749 * 3 2 1 5 5 C 1.31037 * 117.34662 * 180.02562 * 4 3 2 6 6 C 1.50706 * 122.89323 * 180.02562 * 5 4 3 7 7 C 1.35514 * 114.20681 * 0.02562 * 5 4 3 8 8 C 1.47112 * 126.12479 * 180.02562 * 7 5 4 9 9 O 1.21984 * 120.00031 * 359.97438 * 8 7 5 10 10 N 1.34015 * 120.00346 * 179.97438 * 8 7 5 11 11 C 1.32892 * 120.00456 * 179.97438 * 10 8 7 12 12 C 1.41205 * 126.38152 * 0.03256 * 11 10 8 13 13 C 1.34980 * 108.24700 * 179.73183 * 12 11 10 14 14 N 1.36464 * 108.95465 * 0.02562 * 13 12 11 15 15 C 1.46494 * 125.84853 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47548 * 85.02229 * 15 14 13 17 17 H 1.08003 * 119.99657 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00264 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00071 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99913 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47284 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.47145 * 119.99828 * 20 18 16 23 23 H 1.48498 * 109.47071 * 239.99966 * 20 18 16 24 24 N 1.37484 * 126.38435 * 179.71499 * 11 10 8 25 25 H 0.97003 * 126.36460 * 0.24214 * 24 11 10 26 26 S 1.70951 * 124.81077 * 270.31867 * 3 2 1 27 27 H 1.08994 * 109.47101 * 59.99672 * 1 2 3 28 28 H 1.09000 * 109.47806 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.47128 * 300.00180 * 1 2 3 30 30 H 1.08994 * 109.46960 * 239.99700 * 2 1 3 31 31 H 1.09004 * 109.46950 * 119.99828 * 2 1 3 32 32 H 1.08997 * 109.47316 * 269.96009 * 6 5 4 33 33 H 1.08996 * 109.47065 * 29.96288 * 6 5 4 34 34 H 1.09007 * 109.46418 * 149.96022 * 6 5 4 35 35 H 1.08002 * 125.87581 * 359.73239 * 12 11 10 36 36 H 1.07991 * 125.52386 * 179.97438 * 13 12 11 37 37 H 1.09007 * 109.47062 * 205.02623 * 15 14 13 38 38 H 1.09005 * 109.47009 * 325.01750 * 15 14 13 39 39 H 0.96996 * 120.00053 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2786 2.1171 1.0622 5 6 2.7112 3.3422 0.8919 6 6 3.0370 4.2622 2.0403 7 6 2.8404 3.7106 -0.4058 8 6 3.3028 5.0190 -0.8940 9 8 3.6118 5.8919 -0.1000 10 7 3.3847 5.2520 -2.2112 11 6 3.8020 6.4341 -2.6523 12 6 4.1914 7.5346 -1.8580 13 6 4.5531 8.5423 -2.6801 14 7 4.4104 8.1319 -3.9737 15 6 4.7003 8.9336 -5.1650 16 6 6.1662 8.8271 -5.4979 17 1 6.8170 8.2230 -4.8831 18 6 6.6766 9.5009 -6.5871 19 7 5.8840 10.2361 -7.3360 20 14 8.4938 9.3694 -6.9992 21 1 9.1632 8.4871 -6.0098 22 1 8.6526 8.7963 -8.3600 23 1 9.1101 10.7198 -6.9557 24 7 3.9406 6.8114 -3.9671 25 1 3.7489 6.2652 -4.7455 26 16 2.3504 2.3434 -1.4036 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.1468 4.8268 2.3174 33 1 3.3739 3.6733 2.8934 34 1 3.8261 4.9519 1.7406 35 1 4.1987 7.5649 -0.7784 36 1 4.8985 9.5158 -2.3651 37 1 4.1095 8.5649 -6.0037 38 1 4.4462 9.9759 -4.9722 39 1 6.2430 10.7099 -8.1025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344269441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:11:42 Heat of formation + Delta-G solvation = 80.205982 kcal Electronic energy + Delta-G solvation = -23107.080354 eV Core-core repulsion = 19564.280670 eV Total energy + Delta-G solvation = -3542.799684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.36025 -41.12103 -39.63281 -36.01230 -35.16559 -34.65275 -32.59199 -32.43333 -31.73728 -29.62505 -28.20764 -26.36354 -25.13694 -23.76169 -22.79010 -22.76340 -21.76911 -19.68730 -19.01679 -18.81374 -18.17907 -16.94563 -16.85873 -16.55913 -16.52448 -16.08946 -15.71001 -15.51623 -15.06597 -14.84813 -14.57366 -14.41592 -14.29300 -14.18076 -13.85648 -13.69266 -13.35010 -13.10147 -12.86237 -12.76926 -12.53283 -12.35489 -12.22885 -12.08574 -12.02893 -11.25983 -11.14717 -10.79226 -10.59993 -10.57188 -10.38746 -9.99039 -9.64787 -8.63492 -8.29909 -6.57562 -0.71862 0.25859 0.35153 0.53435 0.81836 1.36313 1.41320 1.44122 1.51510 1.78224 2.29378 2.66892 2.93467 2.97768 3.04142 3.44537 3.86526 3.89997 4.13465 4.26354 4.31966 4.33472 4.44589 4.63441 4.73879 4.82089 4.83720 4.88939 4.91840 4.99762 5.02046 5.10571 5.21968 5.32673 5.40292 5.50054 5.68453 5.91763 6.05548 6.35213 6.55649 6.68643 6.70676 7.16405 7.68550 8.64889 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.024149 B = 0.002464 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.179945 B =11359.584947 C =11846.588037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.048 4.048 3 C 0.043 3.957 4 N -0.499 5.499 5 C 0.114 3.886 6 C -0.078 4.078 7 C -0.287 4.287 8 C 0.558 3.442 9 O -0.584 6.584 10 N -0.706 5.706 11 C 0.456 3.544 12 C -0.342 4.342 13 C 0.181 3.819 14 N -0.343 5.343 15 C 0.266 3.734 16 C -0.565 4.565 17 H 0.059 0.941 18 C 0.031 3.969 19 N -0.912 5.912 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.273 1.273 24 N -0.460 5.460 25 H 0.453 0.547 26 S 0.215 5.785 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.227 0.773 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -13.165 9.267 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.089 4.089 3 C -0.232 4.232 4 N -0.215 5.215 5 C -0.024 4.024 6 C -0.137 4.137 7 C -0.411 4.411 8 C 0.345 3.655 9 O -0.469 6.469 10 N -0.470 5.470 11 C 0.206 3.794 12 C -0.374 4.374 13 C 0.036 3.964 14 N -0.128 5.128 15 C 0.149 3.851 16 C -0.603 4.603 17 H 0.078 0.922 18 C -0.172 4.172 19 N -0.550 5.550 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.199 1.199 24 N -0.183 5.183 25 H 0.302 0.698 26 S 0.474 5.526 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.067 0.933 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.195 0.805 36 H 0.244 0.756 37 H 0.063 0.937 38 H 0.092 0.908 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.827 -13.601 7.993 17.610 hybrid contribution 1.232 1.036 0.235 1.627 sum -6.595 -12.565 8.228 16.403 Atomic orbital electron populations 1.21777 0.92469 1.03950 1.02051 1.20489 0.97415 0.85095 1.05857 1.28171 1.00146 1.03047 0.91802 1.66136 1.17046 1.05664 1.32622 1.20888 0.96173 0.91384 0.94001 1.20523 1.03039 0.96672 0.93458 1.25250 1.17410 1.01282 0.97141 1.17827 0.77272 0.85230 0.85214 1.90576 1.50464 1.45371 1.60443 1.68828 1.41824 1.19630 1.16726 1.19268 0.86097 0.91045 0.82942 1.22406 1.18866 0.93857 1.02259 1.23447 0.91292 1.01075 0.80616 1.48000 1.55180 1.00606 1.08966 1.19806 0.96337 0.89812 0.79153 1.21614 0.93851 1.31573 1.13261 0.92238 1.25579 1.02386 0.94010 0.95209 1.69957 1.37207 1.30256 1.17561 0.85415 0.79449 0.78263 0.78027 1.19792 1.20471 1.19872 1.44590 1.61027 1.05071 1.07618 0.69817 1.83765 1.56998 1.02114 1.09737 0.92470 0.88795 0.93295 0.87185 0.87910 0.90265 0.89873 0.89860 0.80461 0.75633 0.93705 0.90763 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.89 71.98 0.71 -1.12 16 2 C -0.05 -0.72 6.51 29.85 0.19 -0.52 16 3 C 0.04 1.06 6.64 88.47 0.59 1.65 16 4 N -0.50 -14.79 10.50 -178.36 -1.87 -16.66 16 5 C 0.11 3.73 6.79 42.05 0.29 4.02 16 6 C -0.08 -2.29 9.70 71.24 0.69 -1.60 16 7 C -0.29 -10.14 6.49 23.97 0.16 -9.99 16 8 C 0.56 22.51 7.71 86.69 0.67 23.18 16 9 O -0.58 -24.57 11.20 -5.26 -0.06 -24.63 16 10 N -0.71 -27.96 10.36 -311.61 -3.23 -31.19 16 11 C 0.46 17.22 8.07 133.94 1.08 18.30 16 12 C -0.34 -12.08 9.52 22.25 0.21 -11.86 16 13 C 0.18 5.57 11.45 83.22 0.95 6.52 16 14 N -0.34 -11.88 3.63 -350.82 -1.28 -13.15 16 15 C 0.27 10.47 6.19 85.63 0.53 11.00 16 16 C -0.56 -25.71 9.39 25.60 0.24 -25.47 16 17 H 0.06 2.81 7.81 -2.91 -0.02 2.79 16 18 C 0.03 1.44 5.46 84.65 0.46 1.90 16 19 N -0.91 -44.85 13.29 21.45 0.28 -44.57 16 20 Si 0.96 38.23 29.54 68.60 2.03 40.26 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 24 N -0.46 -15.75 7.38 -54.77 -0.40 -16.15 16 25 H 0.45 13.70 8.96 -213.28 -1.91 11.79 16 26 S 0.22 5.90 22.99 -56.49 -1.30 4.60 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.74 6.01 -2.38 -0.01 2.72 16 35 H 0.18 6.58 5.77 -2.91 -0.02 6.57 16 36 H 0.23 5.03 8.06 -2.92 -0.02 5.00 16 37 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 39 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 Total: -1.00 -61.48 352.22 0.13 -61.35 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -0.81 Total: 24.14 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 6.77 Total: 16.00 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -6.50 Total: -121.72 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.06 Total: -24.63 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.30 Total: 4.60 kcal Total: -61.48 0.13 -61.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344269441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.553 kcal (2) G-P(sol) polarization free energy of solvation -61.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds