Wall clock time and date at job start Sat Apr 11 2020 00:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33637 * 126.03864 * 2 1 4 4 N 1.31776 * 114.50292 * 180.02562 * 3 2 1 5 5 C 1.29024 * 117.12515 * 0.02562 * 4 3 2 6 6 C 1.50702 * 124.91878 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46750 * 90.02846 * 6 5 4 8 8 O 1.21596 * 120.00357 * 0.02562 * 7 6 5 9 9 N 1.32912 * 120.00103 * 180.02562 * 7 6 5 10 10 C 1.33300 * 120.00261 * 179.97438 * 9 7 6 11 11 C 1.40984 * 126.35515 * 0.02562 * 10 9 7 12 12 C 1.35130 * 108.23904 * 179.73579 * 11 10 9 13 13 C 1.50695 * 125.55056 * 180.28249 * 12 11 10 14 14 N 1.36330 * 108.89810 * 0.26876 * 12 11 10 15 15 C 1.46502 * 125.86680 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.46946 * 84.99472 * 15 14 12 17 17 H 1.08003 * 120.00358 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99722 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00202 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00021 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47128 * 59.99401 * 20 18 16 22 22 H 1.48496 * 109.47148 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46786 * 299.99843 * 20 18 16 24 24 N 1.37279 * 126.36008 * 180.22351 * 10 9 7 25 25 H 0.97007 * 126.34683 * 359.97438 * 24 10 9 26 26 S 1.70977 * 110.16875 * 0.23014 * 5 4 3 27 27 H 1.08997 * 109.47543 * 89.99766 * 1 2 3 28 28 H 1.09005 * 109.46446 * 209.99919 * 1 2 3 29 29 H 1.09000 * 109.46892 * 329.99120 * 1 2 3 30 30 H 1.08004 * 122.74957 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47336 * 330.03285 * 6 5 4 32 32 H 1.08994 * 109.47685 * 210.02628 * 6 5 4 33 33 H 1.08002 * 125.88348 * 0.02562 * 11 10 9 34 34 H 1.09000 * 109.47201 * 89.98109 * 13 12 11 35 35 H 1.09004 * 109.47305 * 209.98228 * 13 12 11 36 36 H 1.09006 * 109.47279 * 329.98390 * 13 12 11 37 37 H 1.08996 * 109.47624 * 204.99803 * 15 14 12 38 38 H 1.09005 * 109.46937 * 324.99775 * 15 14 12 39 39 H 0.97000 * 120.00044 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9312 -0.4257 -0.0015 6 6 5.3532 -0.9245 -0.0028 7 6 5.8279 -1.0922 1.4176 8 8 5.0826 -0.8321 2.3425 9 7 7.0613 -1.5245 1.6595 10 6 7.4814 -1.6724 2.9159 11 6 6.7345 -1.4119 4.0830 12 6 7.5112 -1.6907 5.1531 13 6 7.0967 -1.5553 6.5956 14 7 8.7306 -2.1147 4.7152 15 6 9.8559 -2.5146 5.5638 16 6 9.7059 -3.9645 5.9465 17 1 8.8575 -4.5315 5.5927 18 6 10.6518 -4.5672 6.7484 19 7 11.6852 -3.8769 7.1789 20 14 10.4664 -6.3645 7.2223 21 1 10.4506 -7.2009 5.9953 22 1 11.6069 -6.7699 8.0825 23 1 9.1943 -6.5518 7.9653 24 7 8.7227 -2.1030 3.3137 25 1 9.4569 -2.3565 2.7324 26 16 2.5437 -1.4248 -0.0083 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3633 0.8899 0.5140 30 1 1.9025 2.0875 0.0004 31 1 5.9904 -0.2044 -0.5161 32 1 5.4013 -1.8840 -0.5176 33 1 5.7155 -1.0558 4.1161 34 1 6.6571 -2.4925 6.9368 35 1 7.9701 -1.3208 7.2041 36 1 6.3630 -0.7546 6.6892 37 1 10.7893 -2.3776 5.0180 38 1 9.8681 -1.9005 6.4643 39 1 12.3509 -4.3010 7.7427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348892062.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:11:53 Heat of formation + Delta-G solvation = 81.305721 kcal Electronic energy + Delta-G solvation = -23220.529066 eV Core-core repulsion = 19677.777070 eV Total energy + Delta-G solvation = -3542.751996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.105 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.48656 -40.79744 -39.79257 -36.06575 -34.82861 -34.18941 -33.71176 -32.51637 -31.48342 -28.87761 -28.55149 -26.96655 -25.19375 -24.56098 -23.14993 -21.24287 -20.87887 -19.97643 -18.94483 -18.90697 -18.42585 -17.35880 -16.84863 -16.59200 -16.30322 -15.93781 -15.79471 -15.56421 -15.07438 -14.57028 -14.37857 -14.36431 -14.21523 -13.99613 -13.81612 -13.67997 -13.54516 -13.43052 -13.23013 -12.98265 -12.78643 -12.71871 -12.29848 -12.07188 -12.05490 -11.12858 -10.92793 -10.77497 -10.58074 -10.36062 -10.13168 -9.94123 -9.63529 -8.63883 -8.30194 -6.56834 -0.24786 0.10480 0.42750 0.51881 0.82361 1.39431 1.41261 1.44103 1.49621 1.88711 2.29937 2.69200 2.80404 2.94312 3.20224 3.58351 3.65502 4.04836 4.07803 4.20159 4.24473 4.30943 4.52039 4.63401 4.65769 4.75533 4.78273 4.82668 4.89706 4.92674 4.94191 5.07066 5.10979 5.27897 5.33857 5.49929 5.68422 5.93798 6.08884 6.39462 6.59259 6.80646 6.83742 7.16674 7.80191 8.65781 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.026346 B = 0.002406 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.504815 B =11633.515716 C =11745.291796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.222 4.222 3 C 0.011 3.989 4 N -0.498 5.498 5 C 0.051 3.949 6 C -0.036 4.036 7 C 0.489 3.511 8 O -0.605 6.605 9 N -0.708 5.708 10 C 0.458 3.542 11 C -0.346 4.346 12 C 0.198 3.802 13 C -0.093 4.093 14 N -0.343 5.343 15 C 0.266 3.734 16 C -0.563 4.563 17 H 0.058 0.942 18 C 0.033 3.967 19 N -0.912 5.912 20 Si 0.962 3.038 21 H -0.276 1.276 22 H -0.279 1.279 23 H -0.267 1.267 24 N -0.460 5.460 25 H 0.454 0.546 26 S 0.133 5.867 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.193 0.807 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.173 0.827 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.050 4.640 -8.815 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.344 4.344 3 C -0.139 4.139 4 N -0.212 5.212 5 C -0.226 4.226 6 C -0.079 4.079 7 C 0.274 3.726 8 O -0.489 6.489 9 N -0.473 5.473 10 C 0.209 3.791 11 C -0.377 4.377 12 C 0.071 3.929 13 C -0.151 4.151 14 N -0.129 5.129 15 C 0.149 3.851 16 C -0.601 4.601 17 H 0.076 0.924 18 C -0.170 4.170 19 N -0.549 5.549 20 Si 0.787 3.213 21 H -0.202 1.202 22 H -0.205 1.205 23 H -0.192 1.192 24 N -0.183 5.183 25 H 0.303 0.697 26 S 0.388 5.612 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.210 0.790 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.190 0.810 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.131 0.869 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.154 3.820 -8.839 17.119 hybrid contribution 0.253 0.007 0.427 0.496 sum -13.901 3.826 -8.412 16.693 Atomic orbital electron populations 1.20371 0.84086 1.04456 1.04201 1.26453 1.03165 0.94122 1.10613 1.22023 0.86425 1.01392 1.04098 1.66178 1.19348 1.19465 1.16233 1.26414 1.00804 0.91690 1.03702 1.19830 0.88345 1.04416 0.95333 1.20940 0.84054 0.76638 0.91013 1.90539 1.60065 1.51615 1.46674 1.68717 1.20708 1.41993 1.15922 1.19356 0.82863 0.84813 0.92026 1.22167 1.04156 1.21508 0.89885 1.21917 0.82633 0.89364 0.98980 1.20789 1.03471 1.05271 0.85522 1.47868 1.14665 1.57299 0.93044 1.19769 0.81043 0.96046 0.88231 1.21472 1.09816 0.95678 1.33109 0.92363 1.25573 0.94155 1.02370 0.94894 1.69951 1.11913 1.38574 1.34472 0.85528 0.78198 0.79265 0.78307 1.20164 1.20454 1.19154 1.44513 1.14475 1.63039 0.96230 0.69694 1.83710 0.98201 1.11737 1.67548 0.88828 0.90520 0.88695 0.78996 0.85991 0.85345 0.80956 0.88222 0.89616 0.86921 0.93827 0.91160 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.42 71.24 0.74 -0.19 16 2 C -0.22 -4.91 6.60 24.64 0.16 -4.75 16 3 C 0.01 0.27 11.25 83.66 0.94 1.21 16 4 N -0.50 -16.10 10.54 -191.45 -2.02 -18.12 16 5 C 0.05 1.60 5.88 88.52 0.52 2.12 16 6 C -0.04 -1.12 6.36 29.10 0.19 -0.93 16 7 C 0.49 19.17 7.70 87.95 0.68 19.84 16 8 O -0.61 -26.64 12.94 -4.02 -0.05 -26.69 16 9 N -0.71 -28.13 10.51 -309.87 -3.26 -31.38 16 10 C 0.46 18.13 8.07 133.83 1.08 19.21 16 11 C -0.35 -13.36 9.41 22.23 0.21 -13.15 16 12 C 0.20 6.91 6.93 41.14 0.29 7.19 16 13 C -0.09 -2.45 10.09 71.23 0.72 -1.73 16 14 N -0.34 -12.82 3.63 -337.50 -1.23 -14.05 16 15 C 0.27 10.94 5.93 85.63 0.51 11.45 16 16 C -0.56 -26.00 9.39 25.60 0.24 -25.76 16 17 H 0.06 2.78 7.81 -2.91 -0.02 2.76 16 18 C 0.03 1.54 5.46 84.65 0.46 2.01 16 19 N -0.91 -45.11 13.29 21.45 0.28 -44.82 16 20 Si 0.96 38.21 29.54 68.60 2.03 40.23 16 21 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 24 N -0.46 -16.64 7.37 -54.82 -0.40 -17.04 16 25 H 0.45 14.31 8.96 -213.27 -1.91 12.40 16 26 S 0.13 3.40 23.18 -56.49 -1.31 2.09 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.19 3.73 8.06 -2.91 -0.02 3.70 16 31 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 32 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.17 7.09 5.77 -2.91 -0.02 7.07 16 34 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.09 2.22 7.14 -2.39 -0.02 2.20 16 36 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 2.89 7.18 -2.38 -0.02 2.87 16 39 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 Total: -1.00 -64.04 354.16 -0.04 -64.08 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -0.81 Total: 29.18 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.73 Total: 16.52 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -6.62 Total: -125.42 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.31 Total: 2.09 kcal Total: -64.04 -0.04 -64.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348892062.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.388 kcal (2) G-P(sol) polarization free energy of solvation -64.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds