Wall clock time and date at job start Sat Apr 11 2020 00:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47191 * 2 1 4 4 C 1.50705 * 109.46954 * 239.99623 * 2 1 3 5 5 H 1.07991 * 120.00235 * 239.99874 * 4 2 1 6 6 C 1.37881 * 119.99759 * 60.00239 * 4 2 1 7 7 N 1.31512 * 119.99933 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99756 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46938 * 90.00498 * 8 6 4 10 10 H 1.48504 * 109.46957 * 209.99951 * 8 6 4 11 11 H 1.48497 * 109.47346 * 330.00149 * 8 6 4 12 12 C 1.53002 * 109.47210 * 119.99959 * 2 1 3 13 13 N 1.46500 * 109.46954 * 300.00119 * 12 2 1 14 14 C 1.34781 * 119.99669 * 180.02562 * 13 12 2 15 15 O 1.21650 * 120.00226 * 359.97438 * 14 13 12 16 16 C 1.47028 * 119.99655 * 179.97438 * 14 13 12 17 17 C 1.35880 * 125.43007 * 180.02562 * 16 14 13 18 18 C 1.41571 * 107.73201 * 179.97438 * 17 16 14 19 19 C 1.40123 * 133.35561 * 180.02562 * 18 17 16 20 20 C 1.36405 * 119.85177 * 179.73465 * 19 18 17 21 21 C 1.39069 * 120.60161 * 0.52606 * 20 19 18 22 22 Cl 1.73599 * 119.69511 * 179.73364 * 21 20 19 23 23 C 1.37805 * 120.61522 * 359.45174 * 21 20 19 24 24 C 1.39202 * 119.79711 * 0.27842 * 23 21 20 25 25 N 1.37491 * 133.15375 * 180.02562 * 24 23 21 26 26 H 0.96996 * 125.61602 * 359.95823 * 25 24 23 27 27 H 1.08996 * 109.47212 * 299.99745 * 1 2 3 28 28 H 1.08995 * 109.46844 * 60.00215 * 1 2 3 29 29 H 1.09005 * 109.47364 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47044 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47001 * 299.99577 * 3 2 1 32 32 H 1.08996 * 109.47292 * 60.00297 * 3 2 1 33 33 H 0.96998 * 120.00114 * 180.02562 * 7 6 4 34 34 H 1.08999 * 109.47088 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.46851 * 59.99588 * 12 2 1 36 36 H 0.96999 * 120.00446 * 359.97438 * 13 12 2 37 37 H 1.07997 * 126.13421 * 0.02562 * 17 16 14 38 38 H 1.08000 * 120.07446 * 359.97438 * 19 18 17 39 39 H 1.07996 * 119.70278 * 180.27557 * 20 19 18 40 40 H 1.07992 * 120.10017 * 180.30199 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2395 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1121 11 1 3.6307 -1.7568 -3.7119 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5771 -1.4799 3.7812 16 6 1.3881 0.2026 4.8700 17 6 1.6483 -0.1635 6.1524 18 6 0.9965 0.7597 7.0051 19 6 0.9088 0.8866 8.3978 20 6 0.1916 1.9111 8.9424 21 6 -0.4645 2.8275 8.1277 22 17 -1.3764 4.1183 8.8459 23 6 -0.3928 2.7238 6.7554 24 6 0.3379 1.6897 6.1771 25 7 0.5905 1.3311 4.8740 26 1 0.2624 1.7936 4.0871 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 0.7089 1.1613 -3.4844 34 1 3.1300 -0.7216 1.2490 35 1 1.6766 -1.7489 1.2493 36 1 0.9943 0.7582 2.3565 37 1 2.2459 -1.0070 6.4651 38 1 1.4111 0.1771 9.0386 39 1 0.1293 2.0092 10.0161 40 1 -0.9015 3.4429 6.1306 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457983793.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:13:08 Heat of formation + Delta-G solvation = -10.545753 kcal Electronic energy + Delta-G solvation = -23609.885328 eV Core-core repulsion = 20028.813896 eV Total energy + Delta-G solvation = -3581.071432 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.69899 -40.61320 -38.46159 -38.10521 -36.92445 -35.14358 -33.23823 -32.84464 -30.68947 -29.99977 -27.61187 -27.60025 -27.02274 -24.62369 -23.36694 -22.33760 -21.27100 -20.70247 -19.67330 -18.49832 -17.78604 -17.18097 -16.69429 -16.61952 -16.57080 -15.97190 -15.55328 -15.42892 -14.97068 -14.79504 -14.66168 -14.54916 -14.24647 -14.05570 -13.74288 -13.24087 -13.13921 -13.02870 -12.72540 -12.62179 -12.36162 -12.29851 -12.16190 -11.97811 -11.84797 -11.53416 -11.48453 -11.15614 -10.90667 -10.74439 -10.42889 -10.13363 -9.32975 -8.86553 -8.04842 -6.20248 -0.42860 0.47105 0.92397 1.05324 1.41798 1.45310 1.52868 1.85151 2.11127 2.21546 2.46067 2.72198 3.19520 3.58655 3.66341 4.01065 4.12368 4.18441 4.30144 4.34898 4.46681 4.51380 4.65940 4.79173 4.85756 4.93990 4.98948 5.03278 5.14651 5.19546 5.21550 5.31220 5.42504 5.49080 5.53983 5.62876 5.65657 5.86289 6.11335 6.16800 6.26242 6.40017 6.48791 6.83469 7.03693 7.47792 8.94174 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.002453 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.381724 B =11414.044009 C =12311.366284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.275 1.275 12 C 0.146 3.854 13 N -0.704 5.704 14 C 0.575 3.425 15 O -0.567 6.567 16 C 0.014 3.986 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.043 4.043 20 C -0.142 4.142 21 C -0.008 4.008 22 Cl -0.062 7.062 23 C -0.127 4.127 24 C 0.114 3.886 25 N -0.566 5.566 26 H 0.429 0.571 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.405 0.595 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 6.291 22.151 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.200 1.200 12 C 0.022 3.978 13 N -0.354 5.354 14 C 0.362 3.638 15 O -0.446 6.446 16 C -0.096 4.096 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.062 4.062 20 C -0.161 4.161 21 C -0.036 4.036 22 Cl -0.033 7.033 23 C -0.149 4.149 24 C 0.003 3.997 25 N -0.171 5.171 26 H 0.270 0.730 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.241 0.759 37 H 0.180 0.820 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.116 5.853 21.911 23.050 hybrid contribution -0.126 0.157 -1.777 1.788 sum -4.242 6.009 20.134 21.436 Atomic orbital electron populations 1.21696 0.97125 0.98839 1.00370 1.18360 0.93223 0.93023 0.90274 1.21694 0.98127 0.97842 1.00372 1.21261 1.31751 1.12221 0.91418 0.93491 1.25438 0.95144 0.95558 1.00970 1.69893 1.37026 1.23233 1.23639 0.85768 0.78698 0.78473 0.79925 1.20541 1.20946 1.20021 1.21408 0.97536 0.95338 0.83476 1.46028 1.52378 1.31688 1.05323 1.17517 0.80130 0.83593 0.82567 1.90807 1.39814 1.27276 1.86733 1.20011 1.02278 0.92387 0.94875 1.21084 1.02100 1.00876 0.89533 1.18471 1.03073 0.97539 0.94608 1.20639 0.96463 0.97307 0.91764 1.20776 0.99425 0.94771 1.01157 1.20656 0.98133 0.92597 0.92260 1.98380 1.72847 1.48798 1.83310 1.19968 1.02582 0.98721 0.93596 1.18216 1.00243 0.97515 0.83746 1.41897 1.43765 1.24370 1.07076 0.73028 0.94625 0.91765 0.96125 0.96112 0.91764 0.94617 0.93024 0.93543 0.93528 0.75856 0.81988 0.82225 0.82538 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.21 8.08 71.98 0.58 -4.62 16 4 C -0.53 -27.09 8.01 25.60 0.21 -26.88 16 5 H 0.05 2.46 7.74 -2.92 -0.02 2.44 16 6 C 0.03 1.48 5.15 84.66 0.44 1.91 16 7 N -0.90 -46.82 9.35 21.45 0.20 -46.61 16 8 Si 0.94 41.79 29.54 68.60 2.03 43.82 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 12 C 0.15 5.90 4.50 86.38 0.39 6.29 16 13 N -0.70 -23.07 4.95 -466.74 -2.31 -25.38 16 14 C 0.57 19.12 7.80 86.55 0.67 19.80 16 15 O -0.57 -22.91 16.84 -4.19 -0.07 -22.99 16 16 C 0.01 0.38 6.97 39.90 0.28 0.66 16 17 C -0.11 -2.65 10.53 22.54 0.24 -2.41 16 18 C -0.13 -2.77 6.16 -21.36 -0.13 -2.90 16 19 C -0.04 -0.67 10.06 22.30 0.22 -0.44 16 20 C -0.14 -2.02 9.74 22.04 0.21 -1.80 16 21 C -0.01 -0.13 6.32 22.37 0.14 0.01 16 22 Cl -0.06 -0.93 28.93 -2.72 -0.08 -1.01 16 23 C -0.13 -2.22 9.84 22.40 0.22 -2.00 16 24 C 0.11 2.35 7.25 39.13 0.28 2.64 16 25 N -0.57 -11.95 6.08 -177.18 -1.08 -13.02 16 26 H 0.43 7.19 8.12 -92.71 -0.75 6.43 16 27 H 0.03 1.23 6.86 -2.39 -0.02 1.22 16 28 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 29 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 32 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 33 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.40 11.27 5.22 -92.71 -0.48 10.78 16 37 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 38 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -59.87 346.05 2.86 -57.02 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.14 Total: 20.30 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 4.31 Total: -12.12 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.19 Total: -85.02 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.07 Total: -22.99 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.08 Total: -1.01 kcal Total: -59.87 2.86 -57.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457983793.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.472 kcal (2) G-P(sol) polarization free energy of solvation -59.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds