Wall clock time and date at job start Sat Apr 11 2020 00:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00146 * 2 1 4 4 H 1.48498 * 109.47097 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47145 * 300.00349 * 3 2 1 6 6 H 1.48504 * 109.46753 * 60.00315 * 3 2 1 7 7 C 1.38812 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.49251 * 127.74914 * 359.50874 * 9 7 2 11 11 C 1.56019 * 105.36449 * 182.18858 * 10 9 7 12 12 H 1.09000 * 116.89718 * 159.37904 * 11 10 9 13 13 C 1.57432 * 99.69340 * 32.83402 * 11 10 9 14 14 C 1.49288 * 126.94162 * 180.02562 * 9 7 2 15 15 H 1.08995 * 116.16021 * 15.81965 * 14 9 7 16 16 C 1.56022 * 104.09022 * 246.67057 * 14 9 7 17 17 N 1.47868 * 105.10792 * 287.92385 * 16 14 9 18 18 C 1.34777 * 126.94610 * 181.97361 * 17 16 14 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99928 * 0.30498 * 18 17 16 21 21 O 1.42899 * 109.46876 * 179.72354 * 20 18 17 22 22 C 1.35951 * 116.99789 * 179.97438 * 21 20 18 23 23 C 1.38670 * 120.06592 * 359.97438 * 22 21 20 24 24 C 1.38174 * 119.97136 * 179.97438 * 23 22 21 25 25 C 1.38263 * 120.09755 * 0.02562 * 24 23 22 26 26 C 1.38259 * 120.12384 * 0.02562 * 25 24 23 27 27 C 1.38334 * 120.03004 * 359.69989 * 26 25 24 28 28 F 1.35095 * 120.04506 * 180.27819 * 27 26 25 29 29 H 0.97002 * 119.99754 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.04650 * 63.27597 * 10 9 7 31 31 H 1.08995 * 110.33597 * 301.25362 * 10 9 7 32 32 H 1.09001 * 112.53430 * 191.98041 * 13 11 10 33 33 H 1.08997 * 112.31912 * 64.44309 * 13 11 10 34 34 H 1.09000 * 110.31824 * 169.01659 * 16 14 9 35 35 H 1.09005 * 110.31378 * 46.82906 * 16 14 9 36 36 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 37 37 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 38 38 H 1.08002 * 120.01060 * 359.95321 * 23 22 21 39 39 H 1.07998 * 119.95304 * 179.97438 * 24 23 22 40 40 H 1.07995 * 119.93854 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.98023 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1533 -2.5893 0.0101 11 6 -0.3598 -4.1349 0.0622 12 1 -1.3259 -4.4915 0.4192 13 6 0.8998 -4.5420 0.9143 14 6 1.9103 -3.7616 -0.0005 15 1 2.9645 -3.8351 0.2662 16 6 1.5076 -4.3459 -1.3901 17 7 0.0547 -4.6032 -1.2936 18 6 -0.7366 -5.1454 -2.2404 19 8 -1.9202 -5.2998 -2.0259 20 6 -0.1494 -5.5655 -3.5632 21 8 -1.1790 -6.1132 -4.3890 22 6 -0.8146 -6.5433 -5.6261 23 6 0.5059 -6.4398 -6.0366 24 6 0.8742 -6.8780 -7.2942 25 6 -0.0722 -7.4193 -8.1445 26 6 -1.3901 -7.5234 -7.7397 27 6 -1.7635 -7.0915 -6.4797 28 9 -3.0501 -7.1982 -6.0818 29 1 -0.4850 0.8401 0.0004 30 1 -0.5927 -2.1793 -0.8993 31 1 -0.5932 -2.1189 0.8894 32 1 1.0791 -5.6172 0.9074 33 1 0.8620 -4.1404 1.9269 34 1 2.0447 -5.2751 -1.5800 35 1 1.7121 -3.6217 -2.1787 36 1 0.2902 -4.6989 -4.0572 37 1 0.6212 -6.3180 -3.3960 38 1 1.2460 -6.0165 -5.3737 39 1 1.9026 -6.7969 -7.6137 40 1 0.2184 -7.7606 -9.1270 41 1 -2.1274 -7.9469 -8.4057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032778902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:11:49 Heat of formation + Delta-G solvation = -21.503349 kcal Electronic energy + Delta-G solvation = -26639.897960 eV Core-core repulsion = 22630.014995 eV Total energy + Delta-G solvation = -4009.882964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.84859 -40.50199 -39.84649 -38.14675 -37.11242 -33.68105 -31.81209 -30.95838 -30.47176 -29.36213 -28.65087 -27.73663 -25.28453 -23.75362 -22.96417 -22.64229 -20.71167 -19.93821 -18.77108 -18.57958 -17.34650 -17.23403 -16.67525 -16.61695 -16.17951 -15.74651 -15.50169 -15.16718 -14.85396 -14.58905 -14.36398 -14.02034 -13.64516 -13.23783 -13.17010 -12.85822 -12.44885 -12.28005 -12.03313 -11.91175 -11.75178 -11.42512 -11.38904 -11.29959 -11.09553 -10.93053 -10.86271 -10.66533 -10.33781 -10.11006 -9.69750 -9.55358 -9.21910 -8.79541 -8.42397 -8.14425 -7.00423 -5.83425 -3.17954 0.85700 1.00035 2.46376 2.83951 3.31737 3.33268 3.38065 3.41687 3.54318 4.05046 4.35592 4.40552 4.51320 4.67072 4.79404 4.94373 4.95379 5.00166 5.02424 5.08447 5.22042 5.28311 5.48069 5.54479 5.67050 5.69603 5.77680 5.79047 5.90099 6.04695 6.09605 6.16689 6.31047 6.33229 6.40701 6.50124 6.57707 7.06045 7.33030 7.38446 7.63558 7.90765 8.00442 8.41700 9.01132 9.64069 10.33523 11.29708 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.003001 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.410397 B = 9327.508054 C = 9831.615573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.171 3.829 11 C 0.103 3.897 12 H 0.116 0.884 13 C -0.152 4.152 14 C 0.141 3.859 15 H 0.107 0.893 16 C 0.078 3.922 17 N -0.604 5.604 18 C 0.530 3.470 19 O -0.530 6.530 20 C 0.046 3.954 21 O -0.281 6.281 22 C 0.102 3.898 23 C -0.185 4.185 24 C -0.089 4.089 25 C -0.133 4.133 26 C -0.117 4.117 27 C 0.070 3.930 28 F -0.130 7.130 29 H 0.254 0.746 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -15.495 -11.606 19.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.360 4.360 8 H 0.100 0.900 9 N -0.322 5.322 10 C 0.046 3.954 11 C 0.001 3.999 12 H 0.134 0.866 13 C -0.192 4.192 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.048 4.048 17 N -0.340 5.340 18 C 0.317 3.683 19 O -0.407 6.407 20 C -0.032 4.032 21 O -0.193 6.193 22 C 0.054 3.946 23 C -0.204 4.204 24 C -0.107 4.107 25 C -0.152 4.152 26 C -0.136 4.136 27 C 0.050 3.950 28 F -0.108 7.108 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.157 0.843 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.407 -15.304 -11.452 19.416 hybrid contribution 0.473 1.039 -0.084 1.145 sum 3.879 -14.265 -11.536 18.752 Atomic orbital electron populations 1.69910 1.04979 1.25351 1.56177 1.24834 0.95688 0.97768 1.01951 0.86044 0.78660 0.83685 0.77303 1.20435 1.21749 1.21698 1.19069 0.90350 0.81905 1.44665 0.89980 1.45555 1.01133 0.99185 1.86304 1.22161 0.84681 0.87034 1.01510 1.24449 0.97983 0.97523 0.79938 0.86572 1.24234 0.96587 0.99022 0.99333 1.23133 0.96664 0.86486 0.90526 0.87569 1.23427 0.79678 0.98914 1.02739 1.49119 1.09823 1.59799 1.15239 1.19375 0.86359 0.78501 0.84090 1.90732 1.15121 1.55154 1.79666 1.22549 0.90219 0.99760 0.90684 1.86231 1.35545 1.75021 1.22494 1.19142 0.93079 0.96616 0.85714 1.21250 0.94250 1.05891 0.98985 1.21027 1.00062 0.96757 0.92828 1.20927 0.92057 1.01659 1.00533 1.21032 0.97924 1.00848 0.93807 1.17026 0.78592 1.05662 0.93703 1.91529 1.34140 1.94194 1.90961 0.93540 0.93212 0.92391 0.91438 0.89602 0.92665 0.90857 0.88800 0.89102 0.84294 0.84939 0.84872 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 10.69 55.49 0.59 -25.73 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -5.97 10.38 -15.06 -0.16 -6.13 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -13.80 3.07 -155.23 -0.48 -14.28 16 10 C 0.17 3.98 4.83 -0.90 0.00 3.97 16 11 C 0.10 1.93 5.25 -62.34 -0.33 1.60 16 12 H 0.12 2.14 8.06 -51.93 -0.42 1.72 16 13 C -0.15 -2.43 6.84 -22.11 -0.15 -2.58 16 14 C 0.14 2.44 5.47 -62.56 -0.34 2.10 16 15 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 16 C 0.08 1.21 6.00 -1.67 -0.01 1.20 16 17 N -0.60 -10.67 2.95 -156.54 -0.46 -11.13 16 18 C 0.53 9.72 7.97 -10.98 -0.09 9.64 16 19 O -0.53 -11.89 16.85 -14.35 -0.24 -12.13 16 20 C 0.05 0.65 4.51 36.01 0.16 0.81 16 21 O -0.28 -4.58 9.53 -39.49 -0.38 -4.96 16 22 C 0.10 1.36 6.69 -39.17 -0.26 1.10 16 23 C -0.18 -1.88 9.04 -39.45 -0.36 -2.24 16 24 C -0.09 -0.72 10.04 -39.60 -0.40 -1.12 16 25 C -0.13 -1.04 10.04 -39.56 -0.40 -1.44 16 26 C -0.12 -1.12 10.02 -39.54 -0.40 -1.51 16 27 C 0.07 0.92 7.31 -39.30 -0.29 0.63 16 28 F -0.13 -1.98 17.11 2.25 0.04 -1.94 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.05 1.34 7.72 -51.93 -0.40 0.94 16 31 H 0.06 1.49 7.53 -51.93 -0.39 1.10 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.18 7.66 -51.93 -0.40 0.78 16 37 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 38 H 0.14 1.16 6.30 -52.49 -0.33 0.83 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -33.41 346.91 -9.10 -42.50 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.26 Total: 0.42 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -3.11 Total: 5.79 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.35 Total: -51.14 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.62 Total: -17.09 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.41 -9.10 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032778902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.998 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds