Wall clock time and date at job start Sat Apr 11 2020 00:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 120.00146 * 2 1 4 4 H 1.48498 * 109.47097 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47145 * 300.00349 * 3 2 1 6 6 H 1.48504 * 109.46753 * 60.00315 * 3 2 1 7 7 C 1.38812 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99900 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.49251 * 127.74914 * 359.50874 * 9 7 2 11 11 C 1.56019 * 105.36449 * 182.18858 * 10 9 7 12 12 H 1.09000 * 116.89718 * 159.37904 * 11 10 9 13 13 C 1.57432 * 99.69340 * 32.83402 * 11 10 9 14 14 C 1.49288 * 126.94162 * 180.02562 * 9 7 2 15 15 H 1.08995 * 116.16021 * 15.81965 * 14 9 7 16 16 C 1.56022 * 104.09022 * 246.67057 * 14 9 7 17 17 N 1.47868 * 105.10792 * 287.92385 * 16 14 9 18 18 C 1.34777 * 126.94610 * 181.97361 * 17 16 14 19 19 O 1.21283 * 119.99750 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99928 * 0.30498 * 18 17 16 21 21 O 1.42899 * 109.46876 * 179.72354 * 20 18 17 22 22 C 1.35951 * 116.99789 * 179.97438 * 21 20 18 23 23 C 1.38670 * 120.06592 * 359.97438 * 22 21 20 24 24 C 1.38174 * 119.97136 * 179.97438 * 23 22 21 25 25 C 1.38263 * 120.09755 * 0.02562 * 24 23 22 26 26 C 1.38259 * 120.12384 * 0.02562 * 25 24 23 27 27 C 1.38334 * 120.03004 * 359.69989 * 26 25 24 28 28 F 1.35095 * 120.04506 * 180.27819 * 27 26 25 29 29 H 0.97002 * 119.99754 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.04650 * 63.27597 * 10 9 7 31 31 H 1.08995 * 110.33597 * 301.25362 * 10 9 7 32 32 H 1.09001 * 112.53430 * 191.98041 * 13 11 10 33 33 H 1.08997 * 112.31912 * 64.44309 * 13 11 10 34 34 H 1.09000 * 110.31824 * 169.01659 * 16 14 9 35 35 H 1.09005 * 110.31378 * 46.82906 * 16 14 9 36 36 H 1.09004 * 109.46965 * 299.72211 * 20 18 17 37 37 H 1.08994 * 109.46990 * 59.72065 * 20 18 17 38 38 H 1.08002 * 120.01060 * 359.95321 * 23 22 21 39 39 H 1.07998 * 119.95304 * 179.97438 * 24 23 22 40 40 H 1.07995 * 119.93854 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.98023 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1533 -2.5893 0.0101 11 6 -0.3598 -4.1349 0.0622 12 1 -1.3259 -4.4915 0.4192 13 6 0.8998 -4.5420 0.9143 14 6 1.9103 -3.7616 -0.0005 15 1 2.9645 -3.8351 0.2662 16 6 1.5076 -4.3459 -1.3901 17 7 0.0547 -4.6032 -1.2936 18 6 -0.7366 -5.1454 -2.2404 19 8 -1.9202 -5.2998 -2.0259 20 6 -0.1494 -5.5655 -3.5632 21 8 -1.1790 -6.1132 -4.3890 22 6 -0.8146 -6.5433 -5.6261 23 6 0.5059 -6.4398 -6.0366 24 6 0.8742 -6.8780 -7.2942 25 6 -0.0722 -7.4193 -8.1445 26 6 -1.3901 -7.5234 -7.7397 27 6 -1.7635 -7.0915 -6.4797 28 9 -3.0501 -7.1982 -6.0818 29 1 -0.4850 0.8401 0.0004 30 1 -0.5927 -2.1793 -0.8993 31 1 -0.5932 -2.1189 0.8894 32 1 1.0791 -5.6172 0.9074 33 1 0.8620 -4.1404 1.9269 34 1 2.0447 -5.2751 -1.5800 35 1 1.7121 -3.6217 -2.1787 36 1 0.2902 -4.6989 -4.0572 37 1 0.6212 -6.3180 -3.3960 38 1 1.2460 -6.0165 -5.3737 39 1 1.9026 -6.7969 -7.6137 40 1 0.2184 -7.7606 -9.1270 41 1 -2.1274 -7.9469 -8.4057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032778902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:11:48 Heat of formation + Delta-G solvation = -42.053713 kcal Electronic energy + Delta-G solvation = -26640.789090 eV Core-core repulsion = 22630.014995 eV Total energy + Delta-G solvation = -4010.774095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.85671 -41.76059 -40.98682 -39.41728 -38.20174 -35.46004 -33.48574 -31.71367 -31.50539 -30.76867 -30.24097 -28.89216 -26.99001 -25.28180 -23.92652 -23.46684 -22.16363 -21.44046 -20.12678 -19.70094 -18.84573 -18.16480 -17.94849 -17.71513 -17.49642 -17.20581 -16.63900 -16.39641 -15.87627 -15.84293 -15.62914 -15.38727 -15.05631 -14.70752 -14.23641 -13.84320 -13.76526 -13.56336 -13.38784 -13.29368 -13.11348 -12.84552 -12.76909 -12.68029 -12.34670 -12.22711 -12.15256 -12.13105 -12.00215 -11.87077 -11.52875 -11.06002 -10.75092 -9.95393 -9.63221 -9.27550 -8.92179 -7.85513 -5.20543 0.12145 0.24253 1.31196 1.46564 1.47718 1.47987 1.58299 2.38659 2.48429 2.60235 3.21975 3.27174 3.34262 3.42869 3.72573 3.78665 3.83921 3.87288 3.95667 3.99170 4.03954 4.19870 4.27512 4.33727 4.48620 4.58867 4.66140 4.78131 4.91593 4.97569 5.01946 5.08930 5.13830 5.23497 5.25994 5.42182 5.43791 5.46496 5.62829 5.67398 6.06998 6.18135 6.52684 6.99312 7.01153 7.69634 8.41835 9.27196 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.003001 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.410397 B = 9327.508054 C = 9831.615573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.255 1.255 5 H -0.301 1.301 6 H -0.300 1.300 7 C -0.223 4.223 8 H 0.101 0.899 9 N -0.618 5.618 10 C 0.184 3.816 11 C 0.102 3.898 12 H 0.112 0.888 13 C -0.129 4.129 14 C 0.135 3.865 15 H 0.140 0.860 16 C 0.084 3.916 17 N -0.604 5.604 18 C 0.521 3.479 19 O -0.585 6.585 20 C 0.056 3.944 21 O -0.322 6.322 22 C 0.069 3.931 23 C -0.185 4.185 24 C -0.080 4.080 25 C -0.122 4.122 26 C -0.116 4.116 27 C 0.028 3.972 28 F -0.156 7.156 29 H 0.242 0.758 30 H -0.003 1.003 31 H 0.018 0.982 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.759 -17.857 -13.388 23.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.267 4.267 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.229 1.229 6 H -0.227 1.227 7 C -0.352 4.352 8 H 0.118 0.882 9 N -0.342 5.342 10 C 0.058 3.942 11 C -0.001 4.001 12 H 0.130 0.870 13 C -0.168 4.168 14 C 0.029 3.971 15 H 0.157 0.843 16 C -0.040 4.040 17 N -0.338 5.338 18 C 0.310 3.690 19 O -0.465 6.465 20 C -0.021 4.021 21 O -0.235 6.235 22 C 0.024 3.976 23 C -0.203 4.203 24 C -0.098 4.098 25 C -0.140 4.140 26 C -0.134 4.134 27 C 0.008 3.992 28 F -0.135 7.135 29 H 0.052 0.948 30 H 0.016 0.984 31 H 0.036 0.964 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.177 0.823 39 H 0.187 0.813 40 H 0.188 0.812 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.857 -17.715 -13.246 23.474 hybrid contribution -0.831 1.701 0.384 1.931 sum 7.026 -16.015 -12.862 21.709 Atomic orbital electron populations 1.70157 1.06728 1.25034 1.58987 1.25675 0.96345 1.01268 1.03401 0.85030 0.78721 0.79661 0.76057 1.17857 1.22922 1.22736 1.19587 0.91293 0.82857 1.41462 0.88159 1.45805 1.01115 1.01185 1.86133 1.21746 0.85187 0.90076 0.97192 1.24256 0.99686 0.94077 0.82118 0.87047 1.24142 0.93431 1.01098 0.98117 1.23591 0.98416 0.83139 0.91949 0.84280 1.23427 0.78413 1.01281 1.00869 1.49187 1.10941 1.59071 1.14609 1.20241 0.85772 0.77611 0.85415 1.90700 1.17577 1.57436 1.80817 1.22548 0.90047 1.01494 0.88042 1.86157 1.37180 1.76022 1.24165 1.19477 0.94761 0.98417 0.84978 1.21555 0.92969 1.05534 1.00277 1.21528 1.01859 0.94778 0.91658 1.21432 0.90907 0.99817 1.01868 1.21366 0.99520 1.00032 0.92518 1.17648 0.77874 1.08124 0.95553 1.91449 1.35925 1.94672 1.91441 0.94848 0.98442 0.96374 0.87456 0.90084 0.86871 0.92049 0.87284 0.84946 0.82301 0.81280 0.81173 0.82211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.26 10.69 21.65 0.23 -58.03 16 2 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 3 Si 0.98 44.46 29.55 68.60 2.03 46.49 16 4 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.22 -11.40 10.38 84.03 0.87 -10.52 16 8 H 0.10 4.66 7.83 -2.91 -0.02 4.63 16 9 N -0.62 -28.41 3.07 -645.04 -1.98 -30.39 16 10 C 0.18 9.02 4.83 86.89 0.42 9.44 16 11 C 0.10 3.85 5.25 47.06 0.25 4.09 16 12 H 0.11 4.29 8.06 -2.39 -0.02 4.27 16 13 C -0.13 -3.76 6.84 33.59 0.23 -3.53 16 14 C 0.14 4.24 5.47 46.93 0.26 4.50 16 15 H 0.14 3.51 8.14 -2.39 -0.02 3.49 16 16 C 0.08 2.29 6.00 87.16 0.52 2.81 16 17 N -0.60 -20.68 2.95 -767.57 -2.26 -22.94 16 18 C 0.52 19.12 7.97 87.66 0.70 19.82 16 19 O -0.58 -27.50 16.85 16.00 0.27 -27.23 16 20 C 0.06 1.49 4.51 71.24 0.32 1.82 16 21 O -0.32 -10.66 9.53 -73.96 -0.71 -11.36 16 22 C 0.07 1.83 6.69 22.53 0.15 1.98 16 23 C -0.18 -3.19 9.04 22.36 0.20 -2.99 16 24 C -0.08 -0.94 10.04 22.26 0.22 -0.72 16 25 C -0.12 -1.41 10.04 22.28 0.22 -1.19 16 26 C -0.12 -2.00 10.02 22.30 0.22 -1.78 16 27 C 0.03 0.73 7.31 22.45 0.16 0.90 16 28 F -0.16 -5.10 17.11 44.97 0.77 -4.33 16 29 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.00 -0.16 7.72 -2.38 -0.02 -0.18 16 31 H 0.02 1.01 7.53 -2.39 -0.02 0.99 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.11 2.52 7.66 -2.38 -0.02 2.50 16 37 H 0.13 2.33 7.67 -2.39 -0.02 2.31 16 38 H 0.16 1.97 6.30 -2.91 -0.02 1.95 16 39 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 40 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 41 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -82.03 346.91 4.62 -77.41 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.05 Total: 9.40 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 5.22 Total: 20.97 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.01 Total: -111.36 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.44 Total: -38.59 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.77 Total: -4.33 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -82.03 4.62 -77.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032778902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.356 kcal (2) G-P(sol) polarization free energy of solvation -82.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds