Wall clock time and date at job start Sat Apr 11 2020 00:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99794 * 2 1 4 4 H 1.48495 * 109.46969 * 270.00007 * 3 2 1 5 5 H 1.48500 * 109.47072 * 29.99845 * 3 2 1 6 6 H 1.48494 * 109.47035 * 149.99852 * 3 2 1 7 7 C 1.38809 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99724 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.49772 * 127.89784 * 359.23555 * 9 7 2 11 11 C 1.56015 * 105.31714 * 182.12578 * 10 9 7 12 12 H 1.08996 * 116.89727 * 159.53217 * 11 10 9 13 13 C 1.57088 * 99.60635 * 33.13363 * 11 10 9 14 14 C 1.49283 * 126.94838 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.15001 * 15.84021 * 14 9 7 16 16 C 1.56017 * 104.09425 * 246.70251 * 14 9 7 17 17 N 1.47873 * 105.10611 * 287.91894 * 16 14 9 18 18 C 1.34770 * 126.94875 * 182.01990 * 17 16 14 19 19 O 1.21286 * 120.00073 * 180.02562 * 18 17 16 20 20 C 1.50696 * 119.99971 * 0.03005 * 18 17 16 21 21 O 1.42898 * 109.47398 * 180.02562 * 20 18 17 22 22 C 1.35902 * 117.00316 * 179.97438 * 21 20 18 23 23 C 1.38764 * 120.04152 * 359.71880 * 22 21 20 24 24 C 1.38136 * 119.99534 * 179.75026 * 23 22 21 25 25 C 1.38248 * 120.07782 * 0.52697 * 24 23 22 26 26 C 1.38484 * 120.08398 * 359.75027 * 25 24 23 27 27 F 1.35103 * 119.99445 * 180.02562 * 26 25 24 28 28 C 1.38378 * 120.00427 * 359.97196 * 26 25 24 29 29 H 0.96995 * 119.99861 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.93807 * 63.29274 * 10 9 7 31 31 H 1.08993 * 110.48433 * 301.24707 * 10 9 7 32 32 H 1.09007 * 112.36681 * 191.71595 * 13 11 10 33 33 H 1.08995 * 112.36926 * 64.27271 * 13 11 10 34 34 H 1.08998 * 110.31741 * 46.82458 * 16 14 9 35 35 H 1.08996 * 110.31969 * 169.01310 * 16 14 9 36 36 H 1.09003 * 109.47066 * 299.99657 * 20 18 17 37 37 H 1.08998 * 109.47804 * 59.99622 * 20 18 17 38 38 H 1.08002 * 120.00538 * 0.02562 * 23 22 21 39 39 H 1.08002 * 119.96042 * 180.27506 * 24 23 22 40 40 H 1.07994 * 119.95908 * 179.76604 * 25 24 23 41 41 H 1.08004 * 120.04072 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1577 -2.5940 0.0181 11 6 -0.3586 -4.1404 0.0670 12 1 -1.3228 -4.5013 0.4248 13 6 0.8996 -4.5414 0.9178 14 6 1.9103 -3.7617 0.0028 15 1 2.9646 -3.8348 0.2700 16 6 1.5084 -4.3469 -1.3865 17 7 0.0554 -4.6042 -1.2905 18 6 -0.7352 -5.1479 -2.2369 19 8 -1.9191 -5.3021 -2.0229 20 6 -0.1484 -5.5642 -3.5610 21 8 -1.1785 -6.1079 -4.3887 22 6 -0.8147 -6.5342 -5.6268 23 6 0.5060 -6.4257 -6.0386 24 6 0.8758 -6.8640 -7.2953 25 6 -0.0706 -7.4009 -8.1481 26 6 -1.3906 -7.5055 -7.7427 27 9 -2.3139 -8.0309 -8.5774 28 6 -1.7638 -7.0728 -6.4824 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6001 -2.1835 -0.8897 31 1 -0.5979 -2.1271 0.8991 32 1 1.0789 -5.6166 0.9117 33 1 0.8613 -4.1390 1.9300 34 1 1.7133 -3.6233 -2.1755 35 1 2.0456 -5.2763 -1.5754 36 1 0.2918 -4.6965 -4.0523 37 1 0.6216 -6.3179 -3.3963 38 1 1.2457 -6.0027 -5.3749 39 1 1.9047 -6.7834 -7.6135 40 1 0.2199 -7.7395 -9.1316 41 1 -2.7931 -7.1544 -6.1655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032779222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:11:51 Heat of formation + Delta-G solvation = -23.269651 kcal Electronic energy + Delta-G solvation = -26373.503852 eV Core-core repulsion = 22363.544296 eV Total energy + Delta-G solvation = -4009.959557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.15841 -40.58650 -39.90425 -38.10335 -37.01760 -33.68011 -31.87050 -31.23883 -30.17131 -29.43489 -28.65621 -27.78280 -25.29082 -23.69340 -23.19711 -22.54668 -20.72267 -19.95020 -18.84217 -18.64235 -17.47947 -16.73068 -16.54914 -16.48939 -16.46310 -15.81417 -15.80186 -15.63937 -14.98779 -14.48779 -14.20465 -14.02016 -13.80718 -13.30850 -13.30035 -12.84228 -12.45217 -12.28836 -12.14155 -11.99305 -11.74923 -11.42492 -11.35350 -11.23112 -11.10835 -10.93369 -10.87671 -10.67719 -10.36184 -10.13843 -9.69823 -9.58004 -9.16894 -8.80742 -8.57251 -8.16924 -7.01575 -5.84393 -3.18749 0.84411 1.01203 2.42706 2.81040 3.30976 3.32716 3.37474 3.40510 3.49870 4.10472 4.34738 4.38996 4.60417 4.66889 4.72963 4.85399 4.95716 5.00198 5.05762 5.08124 5.11376 5.26836 5.46694 5.52996 5.65361 5.65874 5.77600 5.79395 5.93238 6.02462 6.03295 6.15024 6.29470 6.33234 6.42343 6.48724 6.56024 7.05818 7.30804 7.36163 7.61614 7.88452 7.98548 8.38479 8.99419 9.63016 10.32547 11.28974 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002784 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.576614 B =10054.056809 C =10634.862350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.170 3.830 11 C 0.103 3.897 12 H 0.117 0.883 13 C -0.152 4.152 14 C 0.141 3.859 15 H 0.106 0.894 16 C 0.078 3.922 17 N -0.604 5.604 18 C 0.531 3.469 19 O -0.532 6.532 20 C 0.046 3.954 21 O -0.284 6.284 22 C 0.165 3.835 23 C -0.221 4.221 24 C -0.049 4.049 25 C -0.196 4.196 26 C 0.138 3.862 27 F -0.135 7.135 28 C -0.189 4.189 29 H 0.255 0.745 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.069 -14.981 -10.226 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.100 0.900 9 N -0.322 5.322 10 C 0.046 3.954 11 C 0.001 3.999 12 H 0.134 0.866 13 C -0.192 4.192 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.048 4.048 17 N -0.339 5.339 18 C 0.317 3.683 19 O -0.409 6.409 20 C -0.032 4.032 21 O -0.196 6.196 22 C 0.118 3.882 23 C -0.240 4.240 24 C -0.067 4.067 25 C -0.215 4.215 26 C 0.119 3.881 27 F -0.114 7.114 28 C -0.208 4.208 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.091 -14.799 -10.117 18.191 hybrid contribution 0.521 0.947 -0.313 1.125 sum 3.612 -13.852 -10.430 17.712 Atomic orbital electron populations 1.69893 1.04978 1.25480 1.56108 1.24827 0.95686 0.97752 1.01945 0.86116 0.78570 0.83416 0.77589 1.21580 1.21650 1.20618 1.19020 0.90307 0.81912 1.44772 0.90028 1.45666 1.01071 0.99140 1.86328 1.22248 0.84637 0.87011 1.01508 1.24368 0.97998 0.97589 0.79943 0.86565 1.24183 0.96591 0.99055 0.99369 1.23129 0.96661 0.86523 0.90506 0.87584 1.23433 0.79632 0.98933 1.02774 1.49114 1.09896 1.59699 1.15187 1.19382 0.86352 0.78449 0.84124 1.90725 1.15113 1.55287 1.79772 1.22549 0.90177 0.99909 0.90562 1.86168 1.35810 1.74903 1.22669 1.18688 0.92362 0.92497 0.84657 1.21402 0.95376 1.08031 0.99217 1.20788 0.99428 0.94267 0.92212 1.21039 0.91557 1.06763 1.02153 1.17266 0.86430 0.96653 0.87776 1.91516 1.65544 1.83884 1.70425 1.20268 1.01159 1.06564 0.92834 0.93488 0.93133 0.92415 0.91467 0.89575 0.90813 0.92651 0.88727 0.89030 0.84537 0.84547 0.84636 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.13 10.72 55.49 0.59 -25.54 16 2 C -0.01 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.23 -5.93 10.39 -15.06 -0.16 -6.09 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -13.64 3.09 -154.81 -0.48 -14.12 16 10 C 0.17 3.91 4.85 -0.60 0.00 3.90 16 11 C 0.10 1.88 5.24 -62.54 -0.33 1.55 16 12 H 0.12 2.08 8.06 -51.93 -0.42 1.66 16 13 C -0.15 -2.38 6.82 -22.32 -0.15 -2.53 16 14 C 0.14 2.40 5.47 -62.57 -0.34 2.06 16 15 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 16 C 0.08 1.17 6.00 -1.67 -0.01 1.16 16 17 N -0.60 -10.34 2.95 -156.77 -0.46 -10.80 16 18 C 0.53 9.32 7.97 -10.99 -0.09 9.23 16 19 O -0.53 -11.43 16.85 -14.36 -0.24 -11.67 16 20 C 0.05 0.61 4.51 36.00 0.16 0.78 16 21 O -0.28 -4.22 9.67 -39.34 -0.38 -4.61 16 22 C 0.16 2.04 6.68 -39.23 -0.26 1.78 16 23 C -0.22 -2.18 9.04 -39.42 -0.36 -2.54 16 24 C -0.05 -0.41 10.04 -39.61 -0.40 -0.80 16 25 C -0.20 -1.76 10.02 -39.49 -0.40 -2.16 16 26 C 0.14 1.50 7.30 -39.44 -0.29 1.22 16 27 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 28 C -0.19 -2.26 9.97 -39.37 -0.39 -2.65 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 1.34 7.71 -51.93 -0.40 0.94 16 31 H 0.06 1.46 7.56 -51.93 -0.39 1.07 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.12 7.65 -51.93 -0.40 0.73 16 37 H 0.09 0.93 7.67 -51.93 -0.40 0.53 16 38 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 41 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -32.02 347.16 -9.09 -41.11 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.27 Total: 1.10 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -3.10 Total: 4.67 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.35 Total: -50.46 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.62 Total: -16.27 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.02 -9.09 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032779222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.841 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds