Wall clock time and date at job start Sat Apr 11 2020 00:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99794 * 2 1 4 4 H 1.48495 * 109.46969 * 270.00007 * 3 2 1 5 5 H 1.48500 * 109.47072 * 29.99845 * 3 2 1 6 6 H 1.48494 * 109.47035 * 149.99852 * 3 2 1 7 7 C 1.38809 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99724 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.49772 * 127.89784 * 359.23555 * 9 7 2 11 11 C 1.56015 * 105.31714 * 182.12578 * 10 9 7 12 12 H 1.08996 * 116.89727 * 159.53217 * 11 10 9 13 13 C 1.57088 * 99.60635 * 33.13363 * 11 10 9 14 14 C 1.49283 * 126.94838 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.15001 * 15.84021 * 14 9 7 16 16 C 1.56017 * 104.09425 * 246.70251 * 14 9 7 17 17 N 1.47873 * 105.10611 * 287.91894 * 16 14 9 18 18 C 1.34770 * 126.94875 * 182.01990 * 17 16 14 19 19 O 1.21286 * 120.00073 * 180.02562 * 18 17 16 20 20 C 1.50696 * 119.99971 * 0.03005 * 18 17 16 21 21 O 1.42898 * 109.47398 * 180.02562 * 20 18 17 22 22 C 1.35902 * 117.00316 * 179.97438 * 21 20 18 23 23 C 1.38764 * 120.04152 * 359.71880 * 22 21 20 24 24 C 1.38136 * 119.99534 * 179.75026 * 23 22 21 25 25 C 1.38248 * 120.07782 * 0.52697 * 24 23 22 26 26 C 1.38484 * 120.08398 * 359.75027 * 25 24 23 27 27 F 1.35103 * 119.99445 * 180.02562 * 26 25 24 28 28 C 1.38378 * 120.00427 * 359.97196 * 26 25 24 29 29 H 0.96995 * 119.99861 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.93807 * 63.29274 * 10 9 7 31 31 H 1.08993 * 110.48433 * 301.24707 * 10 9 7 32 32 H 1.09007 * 112.36681 * 191.71595 * 13 11 10 33 33 H 1.08995 * 112.36926 * 64.27271 * 13 11 10 34 34 H 1.08998 * 110.31741 * 46.82458 * 16 14 9 35 35 H 1.08996 * 110.31969 * 169.01310 * 16 14 9 36 36 H 1.09003 * 109.47066 * 299.99657 * 20 18 17 37 37 H 1.08998 * 109.47804 * 59.99622 * 20 18 17 38 38 H 1.08002 * 120.00538 * 0.02562 * 23 22 21 39 39 H 1.08002 * 119.96042 * 180.27506 * 24 23 22 40 40 H 1.07994 * 119.95908 * 179.76604 * 25 24 23 41 41 H 1.08004 * 120.04072 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 -0.1577 -2.5940 0.0181 11 6 -0.3586 -4.1404 0.0670 12 1 -1.3228 -4.5013 0.4248 13 6 0.8996 -4.5414 0.9178 14 6 1.9103 -3.7617 0.0028 15 1 2.9646 -3.8348 0.2700 16 6 1.5084 -4.3469 -1.3865 17 7 0.0554 -4.6042 -1.2905 18 6 -0.7352 -5.1479 -2.2369 19 8 -1.9191 -5.3021 -2.0229 20 6 -0.1484 -5.5642 -3.5610 21 8 -1.1785 -6.1079 -4.3887 22 6 -0.8147 -6.5342 -5.6268 23 6 0.5060 -6.4257 -6.0386 24 6 0.8758 -6.8640 -7.2953 25 6 -0.0706 -7.4009 -8.1481 26 6 -1.3906 -7.5055 -7.7427 27 9 -2.3139 -8.0309 -8.5774 28 6 -1.7638 -7.0728 -6.4824 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6001 -2.1835 -0.8897 31 1 -0.5979 -2.1271 0.8991 32 1 1.0789 -5.6166 0.9117 33 1 0.8613 -4.1390 1.9300 34 1 1.7133 -3.6233 -2.1755 35 1 2.0456 -5.2763 -1.5754 36 1 0.2918 -4.6965 -4.0523 37 1 0.6216 -6.3179 -3.3963 38 1 1.2457 -6.0027 -5.3749 39 1 1.9047 -6.7834 -7.6135 40 1 0.2199 -7.7395 -9.1316 41 1 -2.7931 -7.1544 -6.1655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032779222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:11:51 Heat of formation + Delta-G solvation = -42.075303 kcal Electronic energy + Delta-G solvation = -26374.319327 eV Core-core repulsion = 22363.544296 eV Total energy + Delta-G solvation = -4010.775031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.99222 -41.75871 -41.05668 -39.38271 -38.04941 -35.42587 -33.47278 -32.11736 -31.16315 -30.76354 -30.20998 -28.92376 -26.96616 -25.23659 -23.99394 -23.51184 -22.11497 -21.41587 -20.11171 -19.73695 -18.91994 -18.02496 -17.69904 -17.58543 -17.31304 -17.04721 -16.81726 -16.65841 -16.34715 -15.93399 -15.65691 -15.23456 -14.74758 -14.71309 -14.53877 -13.82467 -13.72379 -13.56731 -13.38590 -13.29522 -13.09811 -12.85117 -12.81775 -12.70841 -12.33431 -12.17980 -12.12081 -12.09813 -12.03636 -11.84946 -11.50493 -11.02147 -10.72677 -9.94968 -9.60654 -9.38200 -8.90473 -7.84569 -5.19035 0.07842 0.24308 1.32360 1.48347 1.49289 1.49961 1.57961 2.37596 2.49362 2.55587 3.25284 3.34935 3.35611 3.44631 3.72977 3.79488 3.88868 3.89954 3.97940 4.00851 4.07004 4.09352 4.22056 4.25722 4.38887 4.60987 4.68717 4.79670 4.93699 4.98167 5.03549 5.06002 5.15421 5.19022 5.25533 5.31250 5.44899 5.48196 5.63838 5.67127 6.07775 6.19841 6.55977 7.00003 7.03924 7.70612 8.43336 9.28213 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002784 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.576614 B =10054.056809 C =10634.862350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.261 1.261 7 C -0.223 4.223 8 H 0.100 0.900 9 N -0.618 5.618 10 C 0.183 3.817 11 C 0.103 3.897 12 H 0.113 0.887 13 C -0.130 4.130 14 C 0.134 3.866 15 H 0.138 0.862 16 C 0.084 3.916 17 N -0.604 5.604 18 C 0.522 3.478 19 O -0.584 6.584 20 C 0.055 3.945 21 O -0.318 6.318 22 C 0.141 3.859 23 C -0.217 4.217 24 C -0.040 4.040 25 C -0.188 4.188 26 C 0.122 3.878 27 F -0.143 7.143 28 C -0.210 4.210 29 H 0.242 0.758 30 H -0.001 1.001 31 H 0.018 0.982 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.161 0.839 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.286 -17.122 -11.364 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.185 1.185 7 C -0.352 4.352 8 H 0.117 0.883 9 N -0.343 5.343 10 C 0.057 3.943 11 C 0.000 4.000 12 H 0.131 0.869 13 C -0.169 4.169 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.040 4.040 17 N -0.338 5.338 18 C 0.310 3.690 19 O -0.465 6.465 20 C -0.022 4.022 21 O -0.231 6.231 22 C 0.095 3.905 23 C -0.235 4.235 24 C -0.058 4.058 25 C -0.207 4.207 26 C 0.103 3.897 27 F -0.121 7.121 28 C -0.230 4.230 29 H 0.052 0.948 30 H 0.017 0.983 31 H 0.036 0.964 32 H 0.125 0.875 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.193 0.807 40 H 0.178 0.822 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.385 -16.990 -11.267 21.683 hybrid contribution -0.771 1.550 0.001 1.731 sum 6.614 -15.440 -11.266 20.225 Atomic orbital electron populations 1.70140 1.06671 1.25091 1.58958 1.25651 0.96333 1.01187 1.03449 0.85113 0.77841 0.79395 0.77204 1.21749 1.23262 1.18544 1.19536 0.91244 0.82909 1.41532 0.88265 1.45914 1.01116 1.01108 1.86176 1.21849 0.85061 0.90162 0.97218 1.24162 0.99673 0.94027 0.82139 0.86916 1.24087 0.93548 1.01120 0.98121 1.23587 0.98359 0.83197 0.92058 0.84452 1.23414 0.78474 1.01284 1.00779 1.49177 1.10966 1.59103 1.14577 1.20238 0.85771 0.77538 0.85416 1.90697 1.17458 1.57430 1.80866 1.22562 0.90041 1.01699 0.87912 1.86108 1.37206 1.75724 1.24012 1.18865 0.93735 0.93903 0.83968 1.21716 0.94380 1.07210 1.00206 1.21249 1.00979 0.92445 0.91143 1.21416 0.90506 1.05469 1.03314 1.17469 0.87353 0.97413 0.87452 1.91494 1.66058 1.84093 1.70486 1.20340 1.00981 1.07816 0.93827 0.94845 0.98274 0.96426 0.87470 0.90171 0.92015 0.86845 0.87186 0.84827 0.82190 0.80712 0.82153 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.63 10.72 21.65 0.23 -57.40 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 3 Si 0.98 44.12 29.55 68.60 2.03 46.15 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.31 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.22 -11.30 10.39 84.03 0.87 -10.42 16 8 H 0.10 4.57 7.83 -2.91 -0.02 4.54 16 9 N -0.62 -27.99 3.09 -643.71 -1.99 -29.97 16 10 C 0.18 8.78 4.85 86.79 0.42 9.20 16 11 C 0.10 3.76 5.24 46.93 0.25 4.01 16 12 H 0.11 4.17 8.06 -2.39 -0.02 4.15 16 13 C -0.13 -3.67 6.82 33.45 0.23 -3.44 16 14 C 0.13 4.11 5.47 46.92 0.26 4.37 16 15 H 0.14 3.40 8.14 -2.38 -0.02 3.38 16 16 C 0.08 2.20 6.00 87.16 0.52 2.73 16 17 N -0.60 -19.73 2.95 -768.28 -2.27 -22.00 16 18 C 0.52 17.95 7.97 87.66 0.70 18.64 16 19 O -0.58 -25.87 16.85 15.99 0.27 -25.60 16 20 C 0.06 1.33 4.51 71.23 0.32 1.65 16 21 O -0.32 -9.32 9.67 -73.41 -0.71 -10.03 16 22 C 0.14 3.34 6.68 22.50 0.15 3.49 16 23 C -0.22 -3.51 9.04 22.37 0.20 -3.30 16 24 C -0.04 -0.50 10.04 22.25 0.22 -0.28 16 25 C -0.19 -2.81 10.02 22.33 0.22 -2.59 16 26 C 0.12 2.57 7.30 22.36 0.16 2.73 16 27 F -0.14 -3.19 17.27 44.97 0.78 -2.42 16 28 C -0.21 -5.10 9.97 22.41 0.22 -4.88 16 29 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.00 -0.06 7.71 -2.38 -0.02 -0.08 16 31 H 0.02 0.96 7.56 -2.39 -0.02 0.94 16 32 H 0.11 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 2.30 7.65 -2.39 -0.02 2.28 16 37 H 0.13 2.04 7.67 -2.39 -0.02 2.03 16 38 H 0.16 1.76 6.30 -2.91 -0.02 1.74 16 39 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 41 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -77.08 347.16 4.61 -72.46 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.05 Total: 10.46 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 5.22 Total: 18.34 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -4.02 Total: -109.37 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -0.44 Total: -35.62 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.08 4.61 -72.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032779222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.389 kcal (2) G-P(sol) polarization free energy of solvation -77.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds