Wall clock time and date at job start Sat Apr 11 2020 00:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00375 * 2 1 4 4 H 1.48503 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47035 * 300.00298 * 3 2 1 6 6 H 1.48498 * 109.46790 * 60.00155 * 3 2 1 7 7 C 1.38811 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00080 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.47785 * 134.40261 * 180.02562 * 9 7 2 11 11 C 1.52882 * 85.78509 * 156.14480 * 10 9 7 12 12 C 1.47780 * 134.40047 * 0.02980 * 9 7 2 13 13 C 1.53460 * 115.59304 * 140.25150 * 11 10 9 14 14 C 1.54742 * 103.72271 * 152.75699 * 13 11 10 15 15 H 1.08998 * 110.62995 * 119.47206 * 14 13 11 16 16 N 1.46496 * 110.51019 * 242.12326 * 14 13 11 17 17 C 1.34777 * 120.00124 * 201.10459 * 16 14 13 18 18 O 1.21556 * 119.99680 * 359.97438 * 17 16 14 19 19 C 1.47848 * 120.00159 * 179.97438 * 17 16 14 20 20 C 1.39593 * 120.13102 * 359.72184 * 19 17 16 21 21 C 1.37952 * 119.90295 * 179.78693 * 20 19 17 22 22 C 1.38338 * 120.17285 * 0.48906 * 21 20 19 23 23 C 1.38549 * 120.27027 * 359.74597 * 22 21 20 24 24 F 1.35095 * 119.95385 * 179.97438 * 23 22 21 25 25 C 1.38212 * 120.08968 * 0.02562 * 23 22 21 26 26 C 1.54552 * 104.07164 * 0.76814 * 14 13 11 27 27 O 1.43491 * 115.83254 * 265.52672 * 11 10 9 28 28 H 0.97005 * 119.99781 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.82378 * 41.92770 * 10 9 7 30 30 H 1.08999 * 113.92928 * 270.37104 * 10 9 7 31 31 H 1.09001 * 113.82666 * 89.63625 * 12 9 7 32 32 H 1.09003 * 113.82200 * 318.06863 * 12 9 7 33 33 H 1.08991 * 110.57982 * 34.19833 * 13 11 10 34 34 H 1.09004 * 110.57762 * 271.30837 * 13 11 10 35 35 H 0.97007 * 119.99906 * 21.09781 * 16 14 13 36 36 H 1.08002 * 120.04933 * 0.02562 * 20 19 17 37 37 H 1.07999 * 119.90916 * 180.23527 * 21 20 19 38 38 H 1.07999 * 119.86489 * 179.71814 * 22 21 20 39 39 H 1.08000 * 120.08335 * 179.97438 * 25 23 22 40 40 H 1.09002 * 110.33059 * 95.25294 * 26 14 13 41 41 H 1.09002 * 110.32953 * 217.37139 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7228 -3.8115 -0.0005 11 6 0.3495 -4.0782 0.6161 12 6 -0.1059 -2.7556 -0.0006 13 6 -0.3742 -5.3315 0.1057 14 6 -1.2810 -5.7401 1.2912 15 1 -2.3301 -5.7225 0.9960 16 7 -0.9107 -7.0680 1.7868 17 6 -1.7961 -7.7924 2.4993 18 8 -2.9018 -7.3437 2.7311 19 6 -1.4226 -9.1328 2.9990 20 6 -0.1556 -9.6532 2.7294 21 6 0.1895 -10.9025 3.2017 22 6 -0.7202 -11.6451 3.9330 23 6 -1.9813 -11.1377 4.2006 24 9 -2.8648 -11.8686 4.9149 25 6 -2.3371 -9.8853 3.7368 26 6 -1.0027 -4.6642 2.3653 27 8 0.3099 -4.1459 2.0488 28 1 -0.4850 0.8401 0.0004 29 1 2.5557 -4.0361 0.6657 30 1 1.8479 -4.2356 -0.9968 31 1 -0.5339 -2.8590 -0.9977 32 1 -0.7168 -2.1465 0.6657 33 1 0.3413 -6.1222 -0.1194 34 1 -0.9752 -5.0958 -0.7726 35 1 -0.0282 -7.4259 1.6020 36 1 0.5548 -9.0769 2.1552 37 1 1.1710 -11.3036 2.9964 38 1 -0.4463 -12.6245 4.2964 39 1 -3.3203 -9.4900 3.9451 40 1 -1.7474 -3.8703 2.3080 41 1 -1.0035 -5.1122 3.3591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053723966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:16 Heat of formation + Delta-G solvation = -29.588330 kcal Electronic energy + Delta-G solvation = -26118.978850 eV Core-core repulsion = 22108.745294 eV Total energy + Delta-G solvation = -4010.233555 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.29238 -40.69933 -39.70204 -38.35500 -36.18801 -34.48507 -32.11227 -31.95155 -31.20644 -30.03855 -28.07231 -25.90904 -24.99985 -24.62416 -23.09700 -22.24846 -21.26879 -20.67897 -19.01606 -18.71976 -17.02527 -16.74663 -16.66122 -16.42902 -16.18969 -16.01217 -15.40709 -15.21192 -14.95592 -14.71231 -14.31592 -14.16968 -13.82727 -13.59782 -13.40359 -13.01932 -12.82773 -12.60225 -12.46224 -11.91634 -11.77867 -11.58001 -11.52255 -11.27321 -11.11807 -10.86708 -10.58951 -10.37065 -10.10481 -9.78624 -9.62208 -9.53721 -9.34787 -9.23201 -8.84104 -8.76594 -6.88436 -5.75200 -3.07200 0.27838 0.69500 2.45692 2.83138 3.33974 3.40510 3.45363 3.48284 3.79697 4.21206 4.22789 4.27657 4.46452 4.51164 4.58292 4.65106 4.82330 4.98738 5.12868 5.20837 5.22591 5.30260 5.45573 5.49724 5.57223 5.59892 5.70941 5.75447 5.79350 5.93026 5.98208 6.00817 6.30722 6.30967 6.38116 6.45222 6.57049 6.92769 7.19093 7.26969 7.47764 7.64947 7.95250 7.98877 9.05341 9.71940 10.58008 11.42254 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.036370 B = 0.002337 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.676279 B =11976.483957 C =12302.582227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.130 3.870 11 C 0.054 3.946 12 C 0.152 3.848 13 C -0.145 4.145 14 C 0.112 3.888 15 H 0.104 0.896 16 N -0.709 5.709 17 C 0.556 3.444 18 O -0.531 6.531 19 C -0.102 4.102 20 C -0.096 4.096 21 C -0.096 4.096 22 C -0.131 4.131 23 C 0.092 3.908 24 F -0.136 7.136 25 C -0.096 4.096 26 C 0.038 3.962 27 O -0.337 6.337 28 H 0.253 0.747 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.071 0.929 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 -24.557 4.535 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.331 5.331 10 C 0.004 3.996 11 C 0.013 3.987 12 C 0.026 3.974 13 C -0.184 4.184 14 C 0.008 3.992 15 H 0.122 0.878 16 N -0.361 5.361 17 C 0.343 3.657 18 O -0.409 6.409 19 C -0.105 4.105 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.072 3.928 24 F -0.114 7.114 25 C -0.116 4.116 26 C -0.040 4.040 27 O -0.255 6.255 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.238 0.762 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.167 0.833 40 H 0.089 0.911 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.224 -23.801 4.866 24.395 hybrid contribution 0.540 0.540 -0.147 0.778 sum -1.684 -23.260 4.719 23.794 Atomic orbital electron populations 1.69818 1.05028 1.25214 1.56821 1.24778 0.95692 0.97534 1.02487 0.86037 0.78722 0.83707 0.77238 1.20459 1.21782 1.21686 1.19037 0.90266 0.81820 1.43603 0.90143 1.45843 1.02031 0.99147 1.86093 1.22495 0.93772 0.86780 0.96546 1.23842 0.98707 0.94299 0.81835 1.22604 0.88736 0.88960 0.97076 1.23065 0.98676 0.98949 0.97674 1.22512 1.00803 0.81490 0.94410 0.87802 1.46040 1.17195 1.18045 1.54789 1.18153 0.84722 0.84447 0.78389 1.90807 1.21313 1.71651 1.57103 1.19805 0.94835 0.95058 1.00837 1.21446 0.95262 0.96010 0.98797 1.20997 0.99731 0.93939 0.96757 1.21385 0.92272 1.01473 0.99897 1.17559 0.88265 0.90731 0.96200 1.91531 1.67697 1.76530 1.75679 1.21257 1.01274 0.92390 0.96678 1.23796 0.87017 0.94919 0.98273 1.89075 1.31084 1.85251 1.20075 0.93703 0.93012 0.93531 0.94634 0.90345 0.90239 0.89022 0.76243 0.84647 0.84120 0.84218 0.83265 0.91057 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.62 11.40 55.49 0.63 -26.99 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 8 H 0.08 2.21 7.83 -52.48 -0.41 1.79 16 9 N -0.61 -15.63 3.71 -183.59 -0.68 -16.31 16 10 C 0.13 2.60 8.47 -3.40 -0.03 2.57 16 11 C 0.05 1.00 1.28 -90.67 -0.12 0.88 16 12 C 0.15 3.53 6.99 -3.41 -0.02 3.50 16 13 C -0.14 -1.90 6.25 -25.58 -0.16 -2.06 16 14 C 0.11 1.46 3.43 -66.20 -0.23 1.23 16 15 H 0.10 1.38 7.67 -51.93 -0.40 0.98 16 16 N -0.71 -7.61 5.07 -53.07 -0.27 -7.88 16 17 C 0.56 6.69 7.77 -12.33 -0.10 6.60 16 18 O -0.53 -8.26 16.06 5.32 0.09 -8.18 16 19 C -0.10 -0.98 5.87 -104.98 -0.62 -1.60 16 20 C -0.10 -0.66 9.54 -39.18 -0.37 -1.03 16 21 C -0.10 -0.54 10.03 -39.65 -0.40 -0.94 16 22 C -0.13 -0.86 10.02 -39.43 -0.40 -1.25 16 23 C 0.09 0.80 7.29 -39.48 -0.29 0.52 16 24 F -0.14 -1.31 17.26 2.25 0.04 -1.27 16 25 C -0.10 -0.95 9.57 -39.11 -0.37 -1.32 16 26 C 0.04 0.60 7.36 37.97 0.28 0.88 16 27 O -0.34 -6.53 11.46 -35.23 -0.40 -6.93 16 28 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.81 7.96 -51.93 -0.41 0.40 16 32 H 0.08 2.07 7.20 -51.93 -0.37 1.70 16 33 H 0.08 0.85 7.64 -51.93 -0.40 0.46 16 34 H 0.09 1.15 7.83 -51.93 -0.41 0.74 16 35 H 0.40 3.28 6.35 -40.82 -0.26 3.02 16 36 H 0.14 0.63 6.40 -52.49 -0.34 0.30 16 37 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.15 1.54 7.65 -52.49 -0.40 1.13 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.09 1.31 8.06 -51.93 -0.42 0.89 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -34.59 349.34 -8.49 -43.08 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.06 Total: 0.60 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.07 Total: 1.22 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.32 Total: -51.17 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.32 Total: -15.11 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.59 -8.49 -43.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053723966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.496 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds