Wall clock time and date at job start Sat Apr 11 2020 00:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00375 * 2 1 4 4 H 1.48503 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47035 * 300.00298 * 3 2 1 6 6 H 1.48498 * 109.46790 * 60.00155 * 3 2 1 7 7 C 1.38811 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00080 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.47785 * 134.40261 * 180.02562 * 9 7 2 11 11 C 1.52882 * 85.78509 * 156.14480 * 10 9 7 12 12 C 1.47780 * 134.40047 * 0.02980 * 9 7 2 13 13 C 1.53460 * 115.59304 * 140.25150 * 11 10 9 14 14 C 1.54742 * 103.72271 * 152.75699 * 13 11 10 15 15 H 1.08998 * 110.62995 * 119.47206 * 14 13 11 16 16 N 1.46496 * 110.51019 * 242.12326 * 14 13 11 17 17 C 1.34777 * 120.00124 * 201.10459 * 16 14 13 18 18 O 1.21556 * 119.99680 * 359.97438 * 17 16 14 19 19 C 1.47848 * 120.00159 * 179.97438 * 17 16 14 20 20 C 1.39593 * 120.13102 * 359.72184 * 19 17 16 21 21 C 1.37952 * 119.90295 * 179.78693 * 20 19 17 22 22 C 1.38338 * 120.17285 * 0.48906 * 21 20 19 23 23 C 1.38549 * 120.27027 * 359.74597 * 22 21 20 24 24 F 1.35095 * 119.95385 * 179.97438 * 23 22 21 25 25 C 1.38212 * 120.08968 * 0.02562 * 23 22 21 26 26 C 1.54552 * 104.07164 * 0.76814 * 14 13 11 27 27 O 1.43491 * 115.83254 * 265.52672 * 11 10 9 28 28 H 0.97005 * 119.99781 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.82378 * 41.92770 * 10 9 7 30 30 H 1.08999 * 113.92928 * 270.37104 * 10 9 7 31 31 H 1.09001 * 113.82666 * 89.63625 * 12 9 7 32 32 H 1.09003 * 113.82200 * 318.06863 * 12 9 7 33 33 H 1.08991 * 110.57982 * 34.19833 * 13 11 10 34 34 H 1.09004 * 110.57762 * 271.30837 * 13 11 10 35 35 H 0.97007 * 119.99906 * 21.09781 * 16 14 13 36 36 H 1.08002 * 120.04933 * 0.02562 * 20 19 17 37 37 H 1.07999 * 119.90916 * 180.23527 * 21 20 19 38 38 H 1.07999 * 119.86489 * 179.71814 * 22 21 20 39 39 H 1.08000 * 120.08335 * 179.97438 * 25 23 22 40 40 H 1.09002 * 110.33059 * 95.25294 * 26 14 13 41 41 H 1.09002 * 110.32953 * 217.37139 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 1.7228 -3.8115 -0.0005 11 6 0.3495 -4.0782 0.6161 12 6 -0.1059 -2.7556 -0.0006 13 6 -0.3742 -5.3315 0.1057 14 6 -1.2810 -5.7401 1.2912 15 1 -2.3301 -5.7225 0.9960 16 7 -0.9107 -7.0680 1.7868 17 6 -1.7961 -7.7924 2.4993 18 8 -2.9018 -7.3437 2.7311 19 6 -1.4226 -9.1328 2.9990 20 6 -0.1556 -9.6532 2.7294 21 6 0.1895 -10.9025 3.2017 22 6 -0.7202 -11.6451 3.9330 23 6 -1.9813 -11.1377 4.2006 24 9 -2.8648 -11.8686 4.9149 25 6 -2.3371 -9.8853 3.7368 26 6 -1.0027 -4.6642 2.3653 27 8 0.3099 -4.1459 2.0488 28 1 -0.4850 0.8401 0.0004 29 1 2.5557 -4.0361 0.6657 30 1 1.8479 -4.2356 -0.9968 31 1 -0.5339 -2.8590 -0.9977 32 1 -0.7168 -2.1465 0.6657 33 1 0.3413 -6.1222 -0.1194 34 1 -0.9752 -5.0958 -0.7726 35 1 -0.0282 -7.4259 1.6020 36 1 0.5548 -9.0769 2.1552 37 1 1.1710 -11.3036 2.9964 38 1 -0.4463 -12.6245 4.2964 39 1 -3.3203 -9.4900 3.9451 40 1 -1.7474 -3.8703 2.3080 41 1 -1.0035 -5.1122 3.3591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053723966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:16 Heat of formation + Delta-G solvation = -53.717011 kcal Electronic energy + Delta-G solvation = -26120.025148 eV Core-core repulsion = 22108.745294 eV Total energy + Delta-G solvation = -4011.279854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.96482 -41.78789 -40.85833 -39.16597 -37.72541 -35.65902 -34.13067 -32.75314 -31.90699 -31.06297 -29.68423 -27.58487 -26.63876 -25.46368 -23.91609 -23.65776 -22.40623 -21.66380 -20.54044 -19.49846 -18.72114 -17.91106 -17.27867 -17.24424 -17.15643 -16.93043 -16.70373 -16.67702 -16.16078 -16.01152 -15.68447 -15.14905 -14.94929 -14.81719 -14.55643 -14.43307 -14.20642 -13.38941 -13.27878 -13.15535 -12.99462 -12.94970 -12.85818 -12.70875 -12.57301 -12.39513 -12.26106 -11.98502 -11.67676 -11.28655 -11.11493 -10.93544 -10.67802 -10.25733 -10.02135 -9.81697 -8.91601 -7.90046 -5.22475 -0.35267 0.12196 1.44205 1.45963 1.55920 1.68472 1.94053 2.46954 2.66596 2.85180 3.18856 3.28528 3.40631 3.51276 3.56224 3.71230 3.75339 3.82427 4.00416 4.03883 4.07584 4.25955 4.32965 4.54734 4.65800 4.69673 4.75734 4.79209 4.88792 4.94329 4.95845 4.96914 5.03734 5.16250 5.18718 5.24355 5.28086 5.40864 5.52135 5.77204 5.93352 6.10669 6.43582 6.92026 7.08234 7.61350 8.55207 9.27215 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.036370 B = 0.002337 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.676279 B =11976.483957 C =12302.582227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.229 4.229 8 H 0.085 0.915 9 N -0.642 5.642 10 C 0.132 3.868 11 C 0.073 3.927 12 C 0.145 3.855 13 C -0.128 4.128 14 C 0.125 3.875 15 H 0.102 0.898 16 N -0.694 5.694 17 C 0.557 3.443 18 O -0.576 6.576 19 C -0.120 4.120 20 C -0.086 4.086 21 C -0.086 4.086 22 C -0.121 4.121 23 C 0.073 3.927 24 F -0.147 7.147 25 C -0.115 4.115 26 C 0.035 3.965 27 O -0.363 6.363 28 H 0.247 0.753 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.418 0.582 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.166 0.834 39 H 0.129 0.871 40 H 0.054 0.946 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 -27.395 3.776 27.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.223 1.223 7 C -0.357 4.357 8 H 0.103 0.897 9 N -0.369 5.369 10 C 0.008 3.992 11 C 0.032 3.968 12 C 0.019 3.981 13 C -0.166 4.166 14 C 0.020 3.980 15 H 0.120 0.880 16 N -0.347 5.347 17 C 0.345 3.655 18 O -0.457 6.457 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.104 4.104 22 C -0.139 4.139 23 C 0.054 3.946 24 F -0.125 7.125 25 C -0.135 4.135 26 C -0.043 4.043 27 O -0.282 6.282 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.138 0.862 34 H 0.122 0.878 35 H 0.257 0.743 36 H 0.181 0.819 37 H 0.197 0.803 38 H 0.183 0.817 39 H 0.147 0.853 40 H 0.072 0.928 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.469 -26.698 4.099 27.015 hybrid contribution -0.247 1.342 0.144 1.372 sum 0.222 -25.356 4.243 25.710 Atomic orbital electron populations 1.70021 1.06499 1.25376 1.58647 1.25645 0.96599 1.00973 1.03304 0.85003 0.78305 0.79390 0.76613 1.18704 1.21777 1.22280 1.19451 0.90847 0.83386 1.42037 0.89745 1.46278 1.03455 1.00786 1.86356 1.22748 0.94632 0.83474 0.98340 1.23464 0.97712 0.94146 0.81510 1.22585 0.87402 0.91442 0.96675 1.22979 0.99015 0.97110 0.97521 1.22219 1.00829 0.81707 0.93267 0.88042 1.45832 1.17809 1.16853 1.54225 1.18552 0.84078 0.85207 0.77656 1.90788 1.23287 1.72817 1.58797 1.19639 0.96360 0.94010 1.02328 1.21783 0.94087 0.96610 0.97980 1.21456 1.00892 0.92984 0.95052 1.21764 0.90989 1.02441 0.98733 1.17758 0.89289 0.90554 0.97007 1.91500 1.68327 1.76652 1.76069 1.21202 1.00946 0.93386 0.97927 1.23877 0.85309 0.95423 0.99673 1.89046 1.32641 1.85697 1.20770 0.94444 0.92506 0.90088 0.94511 0.94811 0.86236 0.87796 0.74293 0.81910 0.80261 0.81689 0.85267 0.92789 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.39 11.40 21.65 0.25 -59.15 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 7 C -0.23 -13.10 10.70 84.03 0.90 -12.20 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.64 -33.23 3.71 -741.00 -2.75 -35.97 16 10 C 0.13 4.99 8.47 86.09 0.73 5.72 16 11 C 0.07 2.58 1.28 -10.66 -0.01 2.56 16 12 C 0.14 6.85 6.99 86.09 0.60 7.45 16 13 C -0.13 -2.96 6.25 31.34 0.20 -2.76 16 14 C 0.13 3.05 3.43 46.11 0.16 3.21 16 15 H 0.10 2.61 7.67 -2.39 -0.02 2.59 16 16 N -0.69 -13.16 5.07 -440.09 -2.23 -15.39 16 17 C 0.56 12.88 7.77 86.79 0.67 13.55 16 18 O -0.58 -18.36 16.06 -3.89 -0.06 -18.42 16 19 C -0.12 -2.14 5.87 -20.10 -0.12 -2.26 16 20 C -0.09 -0.84 9.54 22.53 0.21 -0.63 16 21 C -0.09 -0.57 10.03 22.23 0.22 -0.34 16 22 C -0.12 -1.18 10.02 22.37 0.22 -0.95 16 23 C 0.07 1.21 7.29 22.34 0.16 1.37 16 24 F -0.15 -2.81 17.26 44.97 0.78 -2.03 16 25 C -0.11 -2.27 9.57 22.58 0.22 -2.06 16 26 C 0.04 1.11 7.36 72.51 0.53 1.64 16 27 O -0.36 -13.91 11.46 -148.98 -1.71 -15.62 16 28 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.04 1.71 7.96 -2.39 -0.02 1.69 16 32 H 0.03 1.88 7.20 -2.39 -0.02 1.86 16 33 H 0.12 1.89 7.64 -2.39 -0.02 1.87 16 34 H 0.10 2.26 7.83 -2.39 -0.02 2.24 16 35 H 0.42 5.04 6.35 -92.70 -0.59 4.45 16 36 H 0.16 0.64 6.40 -2.91 -0.02 0.62 16 37 H 0.18 -0.12 8.06 -2.91 -0.02 -0.15 16 38 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 39 H 0.13 2.95 7.65 -2.91 -0.02 2.93 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.09 2.77 8.06 -2.39 -0.02 2.75 16 Total: -1.00 -80.05 349.34 1.95 -78.09 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.48 Total: 9.10 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 5.17 Total: 10.51 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.73 Total: -110.51 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.77 Total: -34.04 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.78 Total: -2.03 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -80.05 1.95 -78.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053723966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.377 kcal (2) G-P(sol) polarization free energy of solvation -80.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds