Wall clock time and date at job start Sat Apr 11 2020 00:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48500 * 109.46997 * 274.98664 * 3 2 1 5 5 H 1.48496 * 109.47220 * 34.98857 * 3 2 1 6 6 H 1.48503 * 109.47004 * 154.98979 * 3 2 1 7 7 C 1.38816 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 185.08675 * 7 2 1 9 9 N 1.36939 * 119.99537 * 5.08937 * 7 2 1 10 10 C 1.47783 * 134.39978 * 173.51430 * 9 7 2 11 11 C 1.52883 * 85.78276 * 156.14677 * 10 9 7 12 12 C 1.47788 * 134.40259 * 353.53714 * 9 7 2 13 13 C 1.53471 * 115.57970 * 140.26148 * 11 10 9 14 14 C 1.54744 * 103.85257 * 107.37601 * 13 11 10 15 15 H 1.09000 * 110.50705 * 117.81392 * 14 13 11 16 16 N 1.46500 * 110.50496 * 240.51598 * 14 13 11 17 17 C 1.34779 * 119.99693 * 204.99834 * 16 14 13 18 18 O 1.21577 * 119.99935 * 0.02562 * 17 16 14 19 19 C 1.47688 * 120.00415 * 180.02562 * 17 16 14 20 20 C 1.39668 * 120.16167 * 359.72920 * 19 17 16 21 21 C 1.37859 * 119.87442 * 179.72198 * 20 19 17 22 22 C 1.38461 * 120.21964 * 0.55201 * 21 20 19 23 23 C 1.38205 * 120.33882 * 359.72490 * 22 21 20 24 24 C 1.38318 * 120.11787 * 359.97438 * 23 22 21 25 25 F 1.35105 * 120.11469 * 180.02562 * 24 23 22 26 26 C 1.54539 * 104.07522 * 359.16549 * 14 13 11 27 27 O 1.43486 * 115.84180 * 265.30454 * 11 10 9 28 28 H 0.97005 * 120.00496 * 359.97438 * 1 2 3 29 29 H 1.08999 * 113.82604 * 41.92984 * 10 9 7 30 30 H 1.08999 * 113.82066 * 270.36437 * 10 9 7 31 31 H 1.09002 * 113.81817 * 89.63796 * 12 9 7 32 32 H 1.09001 * 113.82101 * 318.07233 * 12 9 7 33 33 H 1.09005 * 110.57276 * 348.74682 * 13 11 10 34 34 H 1.09000 * 110.57907 * 226.01284 * 13 11 10 35 35 H 0.97000 * 120.00716 * 25.00837 * 16 14 13 36 36 H 1.07998 * 120.06313 * 359.97438 * 20 19 17 37 37 H 1.07999 * 119.88777 * 180.27522 * 21 20 19 38 38 H 1.07989 * 119.83140 * 179.74408 * 22 21 20 39 39 H 1.07996 * 119.94236 * 179.97438 * 23 22 21 40 40 H 1.08997 * 110.32950 * 142.51808 * 26 14 13 41 41 H 1.09002 * 110.33275 * 264.64371 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 0.0824 9 7 1.3296 -2.3857 -0.1063 10 6 1.7316 -3.7996 -0.2586 11 6 0.3726 -4.1347 0.3563 12 6 -0.1003 -2.7591 -0.1140 13 6 -0.3574 -5.3341 -0.2632 14 6 -0.2332 -6.4394 0.8127 15 1 -1.2189 -6.7343 1.1727 16 7 0.4869 -7.5977 0.2778 17 6 0.2874 -8.8198 0.8100 18 8 -0.4904 -8.9610 1.7336 19 6 1.0138 -9.9874 0.2712 20 6 1.9040 -9.8300 -0.7934 21 6 2.5831 -10.9231 -1.2879 22 6 2.3771 -12.1779 -0.7401 23 6 1.4940 -12.3448 0.3098 24 6 0.8098 -11.2568 0.8209 25 9 -0.0531 -11.4200 1.8476 26 6 0.5795 -5.7721 1.9450 27 8 0.3644 -4.3520 1.7746 28 1 -0.4851 0.8400 0.0004 29 1 2.5792 -4.0859 0.3640 30 1 1.8362 -4.1182 -1.2957 31 1 -0.5487 -2.7636 -1.1076 32 1 -0.6991 -2.2237 0.6228 33 1 0.1300 -5.6433 -1.1879 34 1 -1.4046 -5.0929 -0.4455 35 1 1.1074 -7.4851 -0.4593 36 1 2.0630 -8.8533 -1.2258 37 1 3.2749 -10.8009 -2.1083 38 1 2.9094 -13.0305 -1.1351 39 1 1.3379 -13.3265 0.7319 40 1 0.2107 -6.0969 2.9179 41 1 1.6381 -6.0111 1.8430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053725429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:21 Heat of formation + Delta-G solvation = -52.725537 kcal Electronic energy + Delta-G solvation = -26400.550584 eV Core-core repulsion = 22389.313725 eV Total energy + Delta-G solvation = -4011.236860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.91979 -41.75572 -40.76999 -39.23990 -37.73910 -35.76262 -34.13401 -32.91072 -31.46022 -31.22637 -29.73747 -27.50471 -26.69033 -25.31507 -24.02733 -23.62655 -22.33692 -21.74733 -20.64476 -19.31174 -18.72572 -18.21281 -17.69805 -17.17217 -16.96115 -16.82786 -16.57738 -16.32213 -16.08784 -16.01883 -15.58816 -15.41744 -14.90273 -14.82171 -14.51199 -14.22868 -14.13294 -13.61443 -13.29805 -13.22361 -13.01373 -12.98811 -12.90481 -12.80823 -12.67085 -12.30862 -12.18419 -11.78011 -11.62674 -11.39838 -11.08040 -10.91829 -10.57515 -10.31944 -10.06293 -9.75657 -8.91421 -7.91691 -5.23454 -0.32842 0.18431 1.44667 1.46982 1.55857 1.73008 1.91378 2.47235 2.68934 2.89360 3.19805 3.26415 3.39595 3.40515 3.55445 3.68363 3.72598 3.81317 4.00780 4.07116 4.19215 4.30009 4.32245 4.54892 4.64508 4.71737 4.74085 4.82601 4.86493 4.92240 4.99369 5.01422 5.04055 5.13984 5.22184 5.23880 5.37900 5.38121 5.50860 5.82762 5.91566 6.11820 6.39649 6.90906 7.07596 7.60296 8.54982 9.26398 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.002548 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.631638 B =10984.317576 C =11553.047972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.234 4.234 8 H 0.083 0.917 9 N -0.640 5.640 10 C 0.109 3.891 11 C 0.072 3.928 12 C 0.172 3.828 13 C -0.130 4.130 14 C 0.127 3.873 15 H 0.094 0.906 16 N -0.695 5.695 17 C 0.554 3.446 18 O -0.573 6.573 19 C -0.195 4.195 20 C -0.054 4.054 21 C -0.130 4.130 22 C -0.053 4.053 23 C -0.167 4.167 24 C 0.120 3.880 25 F -0.143 7.143 26 C 0.034 3.966 27 O -0.369 6.369 28 H 0.249 0.751 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.032 0.968 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.418 0.582 36 H 0.162 0.838 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.157 0.843 40 H 0.089 0.911 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.070 -27.962 -6.899 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.362 4.362 8 H 0.101 0.899 9 N -0.367 5.367 10 C -0.016 4.016 11 C 0.031 3.969 12 C 0.047 3.953 13 C -0.169 4.169 14 C 0.021 3.979 15 H 0.112 0.888 16 N -0.349 5.349 17 C 0.343 3.657 18 O -0.453 6.453 19 C -0.199 4.199 20 C -0.073 4.073 21 C -0.148 4.148 22 C -0.071 4.071 23 C -0.186 4.186 24 C 0.100 3.900 25 F -0.121 7.121 26 C -0.044 4.044 27 O -0.288 6.288 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.257 0.743 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.191 0.809 39 H 0.174 0.826 40 H 0.107 0.893 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.508 -27.538 -6.006 28.718 hybrid contribution 0.032 1.310 0.310 1.346 sum 5.541 -26.228 -5.695 27.405 Atomic orbital electron populations 1.70015 1.06533 1.25650 1.58072 1.25672 0.96586 1.00991 1.02980 0.85056 0.77774 0.79084 0.77414 1.20981 1.22345 1.19259 1.19392 0.91203 0.83435 1.42174 0.89898 1.46204 1.03294 1.02006 1.85187 1.23175 0.95735 0.83838 0.98829 1.23497 0.96504 0.95442 0.81448 1.22079 0.87496 0.88577 0.97175 1.22941 1.03157 0.91968 0.98842 1.22174 0.96463 0.85361 0.93906 0.88767 1.45735 1.45847 1.05655 1.37709 1.18513 0.81362 0.83731 0.82092 1.90829 1.38161 1.85986 1.30358 1.20040 1.05049 0.91892 1.02956 1.21605 0.91913 1.01826 0.91914 1.21670 1.00187 0.91573 1.01372 1.21736 0.93828 0.99338 0.92214 1.21476 0.99041 0.98188 0.99906 1.18275 0.90706 0.94387 0.86628 1.91532 1.67742 1.96161 1.56696 1.23935 1.00005 0.80552 0.99873 1.89116 1.92914 1.24074 1.22652 0.94257 0.93147 0.90457 0.93352 0.94994 0.86398 0.88591 0.74277 0.82077 0.81029 0.80860 0.82566 0.89274 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 11.52 21.65 0.25 -58.94 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.98 46.67 29.56 68.60 2.03 48.70 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.23 -13.45 10.69 84.03 0.90 -12.55 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.64 -33.35 3.70 -741.05 -2.74 -36.10 16 10 C 0.11 4.15 8.44 86.09 0.73 4.87 16 11 C 0.07 2.65 1.29 -10.66 -0.01 2.64 16 12 C 0.17 8.29 6.94 86.09 0.60 8.89 16 13 C -0.13 -3.30 6.24 31.35 0.20 -3.10 16 14 C 0.13 3.21 3.49 46.11 0.16 3.37 16 15 H 0.09 2.66 7.56 -2.39 -0.02 2.65 16 16 N -0.70 -13.80 5.03 -440.25 -2.22 -16.01 16 17 C 0.55 13.89 7.77 86.74 0.67 14.56 16 18 O -0.57 -19.82 14.99 -3.96 -0.06 -19.88 16 19 C -0.20 -3.74 5.88 -20.05 -0.12 -3.86 16 20 C -0.05 -0.55 9.54 22.53 0.21 -0.33 16 21 C -0.13 -0.74 10.03 22.23 0.22 -0.52 16 22 C -0.05 -0.32 10.04 22.31 0.22 -0.10 16 23 C -0.17 -2.04 10.01 22.28 0.22 -1.81 16 24 C 0.12 2.49 7.29 22.67 0.17 2.65 16 25 F -0.14 -4.00 15.55 44.97 0.70 -3.30 16 26 C 0.03 1.04 7.38 72.51 0.53 1.58 16 27 O -0.37 -15.02 11.45 -148.98 -1.71 -16.72 16 28 H 0.25 14.95 8.31 -92.70 -0.77 14.17 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 2.44 7.96 -2.39 -0.02 2.42 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.03 1.81 7.39 -2.39 -0.02 1.79 16 33 H 0.12 2.16 7.39 -2.38 -0.02 2.14 16 34 H 0.10 2.38 8.12 -2.39 -0.02 2.37 16 35 H 0.42 5.23 6.41 -92.71 -0.59 4.63 16 36 H 0.16 0.73 6.41 -2.91 -0.02 0.71 16 37 H 0.17 -0.14 8.06 -2.91 -0.02 -0.17 16 38 H 0.17 -0.18 8.06 -2.92 -0.02 -0.20 16 39 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.07 1.95 8.06 -2.39 -0.02 1.93 16 Total: -1.00 -83.73 347.68 1.90 -81.83 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.47 Total: 7.72 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 5.17 Total: 12.71 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -4.71 Total: -111.05 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.77 Total: -36.60 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.70 Total: -3.30 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -83.73 1.90 -81.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053725429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.101 kcal (2) G-P(sol) polarization free energy of solvation -83.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds