Wall clock time and date at job start Sat Apr 11 2020 00:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86801 * 120.00477 * 2 1 4 4 H 1.48494 * 109.47718 * 240.00432 * 3 2 1 5 5 H 1.48501 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46957 * 120.00064 * 3 2 1 7 7 C 1.38628 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99602 * 179.97438 * 7 2 1 9 9 O 1.34809 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.35794 * 117.00020 * 174.94494 * 9 7 2 11 11 C 1.38899 * 119.99819 * 185.26560 * 10 9 7 12 12 C 1.38006 * 120.00700 * 179.72342 * 11 10 9 13 13 C 1.38944 * 119.99364 * 0.55219 * 12 11 10 14 14 N 1.39786 * 120.00482 * 179.70247 * 13 12 11 15 15 C 1.46502 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.50692 * 109.47257 * 180.02562 * 15 14 13 17 17 C 1.39333 * 120.03466 * 269.72347 * 16 15 14 18 18 N 1.31086 * 121.75344 * 179.71900 * 17 16 15 19 19 C 1.33685 * 121.31803 * 0.58592 * 18 17 16 20 20 C 1.40590 * 121.07469 * 179.71349 * 19 18 17 21 21 C 1.36075 * 119.74550 * 180.02562 * 20 19 18 22 22 C 1.39358 * 121.06878 * 359.97438 * 21 20 19 23 23 C 1.36143 * 120.86726 * 359.97438 * 22 21 20 24 24 C 1.40426 * 119.61224 * 0.02562 * 23 22 21 25 25 C 1.36579 * 120.03683 * 89.99982 * 16 15 14 26 26 C 1.38945 * 119.98918 * 359.72390 * 13 12 11 27 27 C 1.38010 * 119.99580 * 359.97438 * 26 13 12 28 28 H 0.97005 * 119.99387 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.98993 * 359.97438 * 11 10 9 30 30 H 1.07997 * 120.00188 * 180.27159 * 12 11 10 31 31 H 0.97000 * 119.99798 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.46690 * 300.00070 * 15 14 13 33 33 H 1.09002 * 109.47015 * 59.99491 * 15 14 13 34 34 H 1.08005 * 119.12245 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.13185 * 0.02562 * 20 19 18 36 36 H 1.08006 * 119.46911 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.56867 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.19350 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.92196 * 359.97438 * 25 16 15 40 40 H 1.08008 * 120.00584 * 179.97438 * 26 13 12 41 41 H 1.08002 * 119.99928 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1036 1.6964 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1037 1.6962 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3348 -2.3680 -0.0005 10 6 2.0702 -3.5045 -0.1077 11 6 1.4350 -4.7343 -0.2243 12 6 2.1822 -5.8889 -0.3389 13 6 3.5700 -5.8223 -0.3262 14 7 4.3271 -6.9922 -0.4360 15 6 3.6573 -8.2888 -0.5652 16 6 4.6911 -9.3805 -0.6655 17 6 5.1717 -9.7734 -1.9129 18 7 6.0747 -10.7153 -2.0388 19 6 6.5685 -11.3517 -0.9719 20 6 7.5325 -12.3652 -1.1134 21 6 8.0163 -12.9957 -0.0088 22 6 7.5723 -12.6534 1.2670 23 6 6.6407 -11.6765 1.4437 24 6 6.1193 -11.0046 0.3262 25 6 5.1539 -9.9898 0.4659 26 6 4.2052 -4.5926 -0.2038 27 6 3.4576 -3.4376 -0.0954 28 1 -0.4849 0.8401 0.0004 29 1 0.3563 -4.7864 -0.2293 30 1 1.6883 -6.8446 -0.4340 31 1 5.2959 -6.9456 -0.4267 32 1 3.0298 -8.4622 0.3091 33 1 3.0384 -8.2902 -1.4625 34 1 4.7932 -9.2862 -2.7993 35 1 7.8877 -12.6425 -2.0949 36 1 8.7571 -13.7734 -0.1226 37 1 7.9725 -13.1699 2.1270 38 1 6.3047 -11.4197 2.4374 39 1 4.7895 -9.7007 1.4406 40 1 5.2840 -4.5405 -0.1934 41 1 3.9512 -2.4818 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116067577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:41 Heat of formation + Delta-G solvation = 59.902279 kcal Electronic energy + Delta-G solvation = -23982.043704 eV Core-core repulsion = 20406.459977 eV Total energy + Delta-G solvation = -3575.583727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.20028 -39.05656 -37.85526 -36.91683 -34.94496 -33.44425 -32.11585 -31.14011 -30.46993 -30.17152 -27.70109 -25.94071 -24.84952 -24.51135 -22.92829 -22.42941 -21.70090 -20.67560 -18.43636 -17.86130 -17.63500 -17.14137 -16.90260 -16.13099 -15.33893 -15.03694 -14.73349 -14.59352 -14.41957 -14.16318 -13.87922 -13.72466 -13.58052 -13.36050 -13.28351 -12.98267 -12.59923 -12.42273 -12.12419 -11.95371 -11.70151 -11.56024 -11.43924 -11.30609 -10.92722 -10.81128 -10.59733 -10.36774 -9.80675 -9.25405 -9.19812 -9.07952 -8.63212 -8.45870 -8.18146 -6.42993 -6.32479 -3.89748 0.03099 0.42678 1.63336 2.19392 2.52438 2.55691 3.18892 3.20038 3.22560 3.67615 3.91920 4.02568 4.06581 4.22119 4.34181 4.43148 4.56707 4.65731 4.69744 4.77267 4.89969 5.06226 5.19732 5.34974 5.39536 5.41772 5.49297 5.63304 5.64848 5.69859 5.76590 5.80957 5.99976 6.05854 6.18399 6.20034 6.22541 6.46855 6.52437 6.84880 6.88535 7.12000 7.31158 7.43503 7.57790 7.62448 7.93392 8.11742 8.18974 9.13385 9.87506 10.86132 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.001911 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.896065 B =14650.765839 C =14805.459558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.036 3.964 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.387 4.387 8 H 0.088 0.912 9 O -0.188 6.188 10 C 0.114 3.886 11 C -0.151 4.151 12 C -0.144 4.144 13 C 0.122 3.878 14 N -0.757 5.757 15 C 0.179 3.821 16 C -0.152 4.152 17 C 0.151 3.849 18 N -0.476 5.476 19 C 0.126 3.874 20 C -0.095 4.095 21 C -0.101 4.101 22 C -0.120 4.120 23 C -0.093 4.093 24 C -0.105 4.105 25 C -0.038 4.038 26 C -0.139 4.139 27 C -0.190 4.190 28 H 0.268 0.732 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.391 0.609 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.162 0.838 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.105 0.895 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.699 -24.317 1.015 27.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.105 0.895 9 O -0.092 6.092 10 C 0.062 3.938 11 C -0.171 4.171 12 C -0.167 4.167 13 C 0.024 3.976 14 N -0.393 5.393 15 C 0.053 3.947 16 C -0.154 4.154 17 C -0.022 4.022 18 N -0.183 5.183 19 C 0.005 3.995 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.138 4.138 23 C -0.111 4.111 24 C -0.107 4.107 25 C -0.065 4.065 26 C -0.162 4.162 27 C -0.210 4.210 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.224 0.776 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.179 0.821 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.123 0.877 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.483 -24.537 0.218 27.998 hybrid contribution 0.623 1.092 0.841 1.512 sum 14.106 -23.445 1.059 27.382 Atomic orbital electron populations 1.70040 1.05832 1.27384 1.47234 1.25217 0.95806 0.98616 0.97043 0.85836 0.78666 0.80197 0.79012 1.19674 1.20421 1.19696 1.21184 0.91549 0.81113 1.52574 0.89501 1.83984 1.33821 1.11129 1.80311 1.19253 0.90143 0.88258 0.96173 1.20022 0.99319 0.89961 1.07776 1.20163 0.91498 0.97348 1.07651 1.17360 0.90641 0.85638 1.03934 1.44185 1.06907 1.02182 1.86067 1.19932 0.92130 0.80910 1.01700 1.20752 1.00657 0.99693 0.94314 1.22992 0.90761 0.91519 0.96924 1.68115 1.10329 1.07850 1.32056 1.18957 0.96304 0.95958 0.88258 1.20825 0.95867 0.94888 0.99761 1.20934 0.99469 0.99466 0.92251 1.20940 0.97549 0.97787 0.97544 1.21036 0.96653 0.95673 0.97785 1.18874 0.98863 0.98344 0.94612 1.21482 0.93145 0.92533 0.99319 1.20229 0.98206 0.90963 1.06753 1.20994 0.93732 0.98279 1.08022 0.92245 0.86485 0.87100 0.77551 0.91849 0.91601 0.82102 0.84733 0.85289 0.85475 0.85139 0.84065 0.87666 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.67 55.48 0.76 -25.16 16 2 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 3 Si 0.94 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.39 -10.99 9.48 30.88 0.29 -10.69 16 8 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 9 O -0.19 -5.42 9.76 -0.03 0.00 -5.42 16 10 C 0.11 2.77 6.65 -39.09 -0.26 2.51 16 11 C -0.15 -3.17 9.98 -39.42 -0.39 -3.56 16 12 C -0.14 -2.52 9.30 -39.41 -0.37 -2.89 16 13 C 0.12 2.02 6.66 -83.71 -0.56 1.47 16 14 N -0.76 -9.63 5.73 -59.76 -0.34 -9.97 16 15 C 0.18 1.84 5.04 -5.20 -0.03 1.81 16 16 C -0.15 -1.45 5.23 -104.82 -0.55 -2.00 16 17 C 0.15 1.53 10.81 -17.46 -0.19 1.34 16 18 N -0.48 -5.50 10.34 -10.97 -0.11 -5.62 16 19 C 0.13 1.36 6.60 -84.86 -0.56 0.80 16 20 C -0.09 -0.83 9.98 -39.47 -0.39 -1.22 16 21 C -0.10 -0.69 9.94 -39.94 -0.40 -1.08 16 22 C -0.12 -0.79 9.96 -39.92 -0.40 -1.18 16 23 C -0.09 -0.70 9.78 -39.51 -0.39 -1.09 16 24 C -0.10 -1.01 5.74 -106.80 -0.61 -1.63 16 25 C -0.04 -0.35 9.54 -39.23 -0.37 -0.72 16 26 C -0.14 -2.54 9.89 -39.40 -0.39 -2.93 16 27 C -0.19 -4.14 9.16 -39.42 -0.36 -4.50 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 30 H 0.11 1.61 6.73 -52.49 -0.35 1.26 16 31 H 0.39 4.62 8.48 -40.82 -0.35 4.28 16 32 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 33 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 34 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 39 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 LS Contribution 354.19 15.07 5.34 5.34 Total: -1.00 -32.85 354.19 -10.00 -42.85 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.60 Total: 6.75 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: -6.02 Total: -24.64 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.30 Total: -40.75 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: 0.00 Total: -5.42 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.85 -10.00 -42.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116067577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.757 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds