Wall clock time and date at job start Sat Apr 11 2020 00:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86801 * 120.00477 * 2 1 4 4 H 1.48494 * 109.47718 * 240.00432 * 3 2 1 5 5 H 1.48501 * 109.46888 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46957 * 120.00064 * 3 2 1 7 7 C 1.38628 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99602 * 179.97438 * 7 2 1 9 9 O 1.34809 * 119.99847 * 359.97438 * 7 2 1 10 10 C 1.35794 * 117.00020 * 174.94494 * 9 7 2 11 11 C 1.38899 * 119.99819 * 185.26560 * 10 9 7 12 12 C 1.38006 * 120.00700 * 179.72342 * 11 10 9 13 13 C 1.38944 * 119.99364 * 0.55219 * 12 11 10 14 14 N 1.39786 * 120.00482 * 179.70247 * 13 12 11 15 15 C 1.46502 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.50692 * 109.47257 * 180.02562 * 15 14 13 17 17 C 1.39333 * 120.03466 * 269.72347 * 16 15 14 18 18 N 1.31086 * 121.75344 * 179.71900 * 17 16 15 19 19 C 1.33685 * 121.31803 * 0.58592 * 18 17 16 20 20 C 1.40590 * 121.07469 * 179.71349 * 19 18 17 21 21 C 1.36075 * 119.74550 * 180.02562 * 20 19 18 22 22 C 1.39358 * 121.06878 * 359.97438 * 21 20 19 23 23 C 1.36143 * 120.86726 * 359.97438 * 22 21 20 24 24 C 1.40426 * 119.61224 * 0.02562 * 23 22 21 25 25 C 1.36579 * 120.03683 * 89.99982 * 16 15 14 26 26 C 1.38945 * 119.98918 * 359.72390 * 13 12 11 27 27 C 1.38010 * 119.99580 * 359.97438 * 26 13 12 28 28 H 0.97005 * 119.99387 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.98993 * 359.97438 * 11 10 9 30 30 H 1.07997 * 120.00188 * 180.27159 * 12 11 10 31 31 H 0.97000 * 119.99798 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.46690 * 300.00070 * 15 14 13 33 33 H 1.09002 * 109.47015 * 59.99491 * 15 14 13 34 34 H 1.08005 * 119.12245 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.13185 * 0.02562 * 20 19 18 36 36 H 1.08006 * 119.46911 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.56867 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.19350 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.92196 * 359.97438 * 25 16 15 40 40 H 1.08008 * 120.00584 * 179.97438 * 26 13 12 41 41 H 1.08002 * 119.99928 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.1036 1.6964 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1037 1.6962 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3348 -2.3680 -0.0005 10 6 2.0702 -3.5045 -0.1077 11 6 1.4350 -4.7343 -0.2243 12 6 2.1822 -5.8889 -0.3389 13 6 3.5700 -5.8223 -0.3262 14 7 4.3271 -6.9922 -0.4360 15 6 3.6573 -8.2888 -0.5652 16 6 4.6911 -9.3805 -0.6655 17 6 5.1717 -9.7734 -1.9129 18 7 6.0747 -10.7153 -2.0388 19 6 6.5685 -11.3517 -0.9719 20 6 7.5325 -12.3652 -1.1134 21 6 8.0163 -12.9957 -0.0088 22 6 7.5723 -12.6534 1.2670 23 6 6.6407 -11.6765 1.4437 24 6 6.1193 -11.0046 0.3262 25 6 5.1539 -9.9898 0.4659 26 6 4.2052 -4.5926 -0.2038 27 6 3.4576 -3.4376 -0.0954 28 1 -0.4849 0.8401 0.0004 29 1 0.3563 -4.7864 -0.2293 30 1 1.6883 -6.8446 -0.4340 31 1 5.2959 -6.9456 -0.4267 32 1 3.0298 -8.4622 0.3091 33 1 3.0384 -8.2902 -1.4625 34 1 4.7932 -9.2862 -2.7993 35 1 7.8877 -12.6425 -2.0949 36 1 8.7571 -13.7734 -0.1226 37 1 7.9725 -13.1699 2.1270 38 1 6.3047 -11.4197 2.4374 39 1 4.7895 -9.7007 1.4406 40 1 5.2840 -4.5405 -0.1934 41 1 3.9512 -2.4818 0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116067577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:40 Heat of formation + Delta-G solvation = 40.138664 kcal Electronic energy + Delta-G solvation = -23982.900718 eV Core-core repulsion = 20406.459977 eV Total energy + Delta-G solvation = -3576.440741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86379 -40.67842 -38.93992 -38.10137 -36.07608 -34.43410 -33.95701 -32.10027 -31.68859 -31.07555 -29.00528 -27.47585 -26.27472 -25.23213 -23.99634 -23.14961 -22.90306 -22.20924 -19.69248 -19.03475 -18.83935 -18.34401 -17.94050 -17.21836 -16.62342 -16.18751 -15.71960 -15.54326 -15.45077 -15.37665 -15.21916 -15.06064 -14.64466 -14.56125 -14.30409 -14.04318 -14.01505 -13.63097 -13.42410 -13.02435 -12.98071 -12.68798 -12.57842 -12.48121 -12.28299 -12.18285 -12.09859 -11.49496 -11.07795 -10.91101 -10.51881 -10.16888 -9.74708 -9.73632 -9.24932 -8.37867 -7.92783 -6.01323 -0.59558 -0.23400 0.61530 0.95459 0.98895 1.37326 1.48464 1.53271 1.89449 2.23773 2.75606 2.93246 3.15676 3.27676 3.30065 3.56986 3.66819 3.71179 3.81647 3.94752 4.05843 4.15660 4.21265 4.25092 4.36592 4.45750 4.59778 4.65732 4.67701 4.73420 4.82566 4.98068 5.04472 5.08728 5.14934 5.16594 5.30176 5.40793 5.48204 5.48911 5.56750 5.57372 5.81076 5.90295 5.99777 6.13152 6.60475 6.87562 6.98895 7.08020 7.95169 8.86289 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.001911 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.896065 B =14650.765839 C =14805.459558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.029 4.029 3 Si 1.016 2.984 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.406 4.406 8 H 0.098 0.902 9 O -0.242 6.242 10 C 0.061 3.939 11 C -0.155 4.155 12 C -0.141 4.141 13 C 0.154 3.846 14 N -0.743 5.743 15 C 0.178 3.822 16 C -0.156 4.156 17 C 0.142 3.858 18 N -0.504 5.504 19 C 0.102 3.898 20 C -0.120 4.120 21 C -0.091 4.091 22 C -0.120 4.120 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.034 4.034 26 C -0.145 4.145 27 C -0.195 4.195 28 H 0.269 0.731 29 H 0.114 0.886 30 H 0.148 0.852 31 H 0.400 0.600 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.171 0.829 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.135 0.865 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.363 -26.881 1.893 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.225 4.225 3 Si 0.836 3.164 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.482 4.482 8 H 0.115 0.885 9 O -0.150 6.150 10 C 0.012 3.988 11 C -0.175 4.175 12 C -0.163 4.163 13 C 0.054 3.946 14 N -0.378 5.378 15 C 0.054 3.946 16 C -0.159 4.159 17 C -0.031 4.031 18 N -0.211 5.211 19 C -0.019 4.019 20 C -0.138 4.138 21 C -0.111 4.111 22 C -0.137 4.137 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.060 4.060 26 C -0.167 4.167 27 C -0.215 4.215 28 H 0.078 0.922 29 H 0.132 0.868 30 H 0.166 0.834 31 H 0.235 0.765 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.188 0.812 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.153 0.847 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.206 -27.198 1.091 31.679 hybrid contribution 0.002 1.380 0.576 1.495 sum 16.208 -25.818 1.667 30.530 Atomic orbital electron populations 1.70198 1.07901 1.28419 1.50048 1.26517 0.96857 1.02602 0.96543 0.84687 0.77346 0.74655 0.79758 1.18379 1.19815 1.18288 1.21697 0.92294 0.81809 1.52428 0.88512 1.83931 1.35527 1.12309 1.83283 1.19772 0.91462 0.88107 0.99468 1.20255 0.99693 0.90137 1.07412 1.20457 0.91858 0.97506 1.06528 1.17457 0.90681 0.86537 0.99934 1.44296 1.07321 1.01925 1.84215 1.20069 0.92367 0.79544 1.02641 1.20567 1.01033 0.99941 0.94316 1.23204 0.90679 0.91476 0.97706 1.68102 1.11292 1.08772 1.32979 1.19333 0.97123 0.96699 0.88758 1.21021 0.96510 0.95482 1.00808 1.21321 0.98933 0.99039 0.91801 1.21354 0.96740 0.97229 0.98398 1.21360 0.96685 0.95602 0.98134 1.19106 0.99412 0.99009 0.94871 1.21734 0.92448 0.91901 0.99934 1.20472 0.99569 0.90331 1.06375 1.21042 0.93000 0.99340 1.08073 0.92187 0.86812 0.83449 0.76546 0.90639 0.90681 0.81190 0.84555 0.82523 0.82525 0.82989 0.82245 0.84679 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.21 13.67 21.61 0.30 -57.91 16 2 C -0.03 -1.69 5.49 84.82 0.47 -1.22 16 3 Si 1.02 44.00 29.55 68.60 2.03 46.02 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 7 C -0.41 -24.17 9.48 67.91 0.64 -23.53 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.27 16 9 O -0.24 -14.92 9.76 -23.01 -0.22 -15.14 16 10 C 0.06 3.10 6.65 22.59 0.15 3.25 16 11 C -0.16 -6.59 9.98 22.37 0.22 -6.36 16 12 C -0.14 -4.61 9.30 22.38 0.21 -4.40 16 13 C 0.15 4.67 6.66 38.21 0.25 4.93 16 14 N -0.74 -16.06 5.73 -342.98 -1.96 -18.02 16 15 C 0.18 3.00 5.04 85.63 0.43 3.43 16 16 C -0.16 -2.58 5.23 -19.99 -0.10 -2.68 16 17 C 0.14 2.67 10.81 85.07 0.92 3.59 16 18 N -0.50 -11.28 10.34 -188.63 -1.95 -13.23 16 19 C 0.10 2.08 6.60 40.29 0.27 2.34 16 20 C -0.12 -1.94 9.98 22.34 0.22 -1.72 16 21 C -0.09 -0.99 9.94 22.04 0.22 -0.77 16 22 C -0.12 -1.15 9.96 22.05 0.22 -0.93 16 23 C -0.10 -1.20 9.78 22.31 0.22 -0.98 16 24 C -0.12 -2.09 5.74 -21.28 -0.12 -2.21 16 25 C -0.03 -0.52 9.54 22.50 0.21 -0.31 16 26 C -0.15 -5.00 9.89 22.39 0.22 -4.77 16 27 C -0.19 -8.58 9.16 22.38 0.20 -8.37 16 28 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 29 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.15 3.71 6.73 -2.91 -0.02 3.69 16 31 H 0.40 7.87 8.48 -92.71 -0.79 7.08 16 32 H 0.08 1.18 7.89 -2.39 -0.02 1.16 16 33 H 0.08 1.21 7.89 -2.39 -0.02 1.19 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 38 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.12 5.26 5.63 -2.91 -0.02 5.24 16 Total: -1.00 -77.04 354.19 3.33 -73.71 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.29 Total: 25.28 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 4.86 Total: -40.71 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -3.62 Total: -89.16 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.22 Total: -15.14 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -77.04 3.33 -73.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116067577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.850 kcal (2) G-P(sol) polarization free energy of solvation -77.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds