Wall clock time and date at job start Sat Apr 11 2020 00:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99843 * 2 1 4 4 H 1.48503 * 109.47261 * 239.99990 * 3 2 1 5 5 H 1.48503 * 109.47392 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47153 * 119.99885 * 3 2 1 7 7 C 1.37876 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99806 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47038 * 174.85383 * 9 7 2 11 11 H 1.08997 * 109.47173 * 54.19621 * 10 9 7 12 12 N 1.46500 * 109.47061 * 174.20306 * 10 9 7 13 13 C 1.34783 * 119.99479 * 278.67756 * 12 10 9 14 14 O 1.21341 * 119.99943 * 355.03461 * 13 12 10 15 15 C 1.49450 * 119.99469 * 175.03535 * 13 12 10 16 16 O 1.21345 * 120.00199 * 0.02562 * 15 13 12 17 17 N 1.34783 * 119.99469 * 180.02562 * 15 13 12 18 18 C 1.47583 * 134.48907 * 179.97438 * 17 15 13 19 19 C 1.53949 * 86.11419 * 155.36059 * 18 17 15 20 20 F 1.39902 * 113.73956 * 137.95313 * 19 18 17 21 21 C 1.47811 * 134.45569 * 359.86592 * 17 15 13 22 22 C 1.50708 * 109.46706 * 294.19580 * 10 9 7 23 23 C 1.38227 * 120.00174 * 279.72652 * 22 10 9 24 24 C 1.38244 * 120.00090 * 179.78978 * 23 22 10 25 25 C 1.38236 * 119.99395 * 0.44441 * 24 23 22 26 26 C 1.38238 * 120.00454 * 359.80888 * 25 24 23 27 27 C 1.38233 * 119.99595 * 100.00348 * 22 10 9 28 28 H 0.96998 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47378 * 54.85444 * 9 7 2 30 30 H 1.09002 * 109.47805 * 294.84960 * 9 7 2 31 31 H 0.97001 * 120.00417 * 98.68664 * 12 10 9 32 32 H 1.08996 * 113.77100 * 41.05415 * 18 17 15 33 33 H 1.09003 * 113.76730 * 269.65583 * 18 17 15 34 34 H 1.08997 * 113.73853 * 269.15433 * 19 18 17 35 35 H 1.09004 * 113.76635 * 90.38704 * 21 17 15 36 36 H 1.08992 * 113.84082 * 318.91685 * 21 17 15 37 37 H 1.08002 * 120.00557 * 359.97438 * 23 22 10 38 38 H 1.07994 * 120.00065 * 180.27134 * 24 23 22 39 39 H 1.08006 * 119.99530 * 179.83717 * 25 24 23 40 40 H 1.07997 * 119.99954 * 180.02562 * 26 25 24 41 41 H 1.08001 * 120.00412 * 359.97264 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2404 -3.6591 -0.1282 11 1 2.9960 -3.5808 0.6534 12 7 1.5240 -4.9295 0.0105 13 6 1.2205 -5.4016 1.2360 14 8 1.6182 -4.8220 2.2250 15 6 0.3941 -6.6389 1.3764 16 8 -0.0031 -7.2187 0.3872 17 7 0.0902 -7.1106 2.6018 18 6 -0.6785 -8.2661 3.1038 19 6 0.1809 -8.1519 4.3760 20 9 -0.5430 -8.3184 5.5615 21 6 0.3950 -6.6790 3.9822 22 6 2.9069 -3.6033 -1.4787 23 6 2.2514 -4.0909 -2.5937 24 6 2.8611 -4.0356 -3.8332 25 6 4.1300 -3.5012 -3.9560 26 6 4.7877 -3.0183 -2.8401 27 6 4.1762 -3.0696 -1.6014 28 1 -0.4850 0.8400 0.0004 29 1 0.5574 -2.5182 -0.8401 30 1 0.6950 -2.5977 0.9328 31 1 1.2682 -5.4309 -0.7795 32 1 -0.5101 -9.1840 2.5407 33 1 -1.7351 -8.0534 3.2670 34 1 1.0909 -8.7512 4.3460 35 1 -0.3458 -5.9995 4.4037 36 1 1.4191 -6.3319 4.1193 37 1 1.2617 -4.5123 -2.4972 38 1 2.3471 -4.4126 -4.7051 39 1 4.6074 -3.4604 -4.9240 40 1 5.7789 -2.6004 -2.9362 41 1 4.6900 -2.6923 -0.7296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117610834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:48 Heat of formation + Delta-G solvation = -52.832784 kcal Electronic energy + Delta-G solvation = -26420.815848 eV Core-core repulsion = 22409.574337 eV Total energy + Delta-G solvation = -4011.241511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.98356 -40.67299 -39.37614 -38.39879 -37.55092 -35.28494 -32.88426 -31.16865 -30.45451 -29.83943 -28.68677 -26.81106 -25.54286 -23.74298 -22.40165 -22.19437 -21.55938 -19.80967 -19.52675 -18.15198 -17.34869 -17.08390 -16.72554 -16.14834 -15.69155 -15.57420 -15.29748 -14.81730 -14.76242 -14.55633 -14.33836 -13.82025 -13.75942 -13.29779 -13.10459 -12.97643 -12.85546 -12.80267 -12.51206 -12.18536 -11.88383 -11.60306 -11.36555 -11.19751 -10.95886 -10.87614 -10.80076 -10.65998 -10.11169 -10.01516 -9.48110 -9.17997 -9.12271 -8.70073 -8.49536 -8.38609 -8.12082 -6.03520 -4.05712 1.56932 1.76477 1.82921 2.14634 3.32412 3.35866 3.36870 3.40364 3.41277 3.66592 4.02690 4.23209 4.42014 4.48341 4.59198 4.77302 5.02317 5.10526 5.17726 5.22475 5.26858 5.33935 5.35710 5.47759 5.49510 5.76125 5.88355 5.94439 6.10123 6.33287 6.43892 6.56872 6.61962 6.83073 6.88010 7.07149 7.12256 7.33032 7.40610 7.59334 7.61208 7.87080 7.92742 8.24043 8.34140 8.97390 9.57550 11.08107 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.003750 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.557523 B = 7464.291267 C = 9121.843759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.180 3.820 11 H 0.091 0.909 12 N -0.689 5.689 13 C 0.509 3.491 14 O -0.512 6.512 15 C 0.538 3.462 16 O -0.519 6.519 17 N -0.624 5.624 18 C 0.088 3.912 19 C 0.053 3.947 20 F -0.196 7.196 21 C 0.092 3.908 22 C -0.051 4.051 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.132 4.132 26 C -0.121 4.121 27 C -0.096 4.096 28 H 0.261 0.739 29 H 0.026 0.974 30 H 0.024 0.976 31 H 0.404 0.596 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.552 -15.784 2.182 16.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.078 3.922 11 H 0.109 0.891 12 N -0.342 5.342 13 C 0.288 3.712 14 O -0.387 6.387 15 C 0.322 3.678 16 O -0.394 6.394 17 N -0.361 5.361 18 C -0.035 4.035 19 C 0.016 3.984 20 F -0.177 7.177 21 C -0.031 4.031 22 C -0.051 4.051 23 C -0.136 4.136 24 C -0.138 4.138 25 C -0.151 4.151 26 C -0.139 4.139 27 C -0.115 4.115 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.240 0.760 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.496 -15.453 2.161 15.991 hybrid contribution 0.016 0.947 -0.427 1.038 sum 3.513 -14.507 1.734 15.026 Atomic orbital electron populations 1.69950 1.06070 1.26801 1.50396 1.24940 0.94782 0.99152 0.95141 0.86661 0.79633 0.83125 0.78669 1.20159 1.21305 1.20140 1.20961 0.92954 0.90191 1.51116 0.92332 1.19445 0.93522 0.90307 0.98051 1.20511 0.95548 0.82513 0.93631 0.89074 1.46139 1.56736 1.23954 1.07326 1.19646 0.81831 0.84875 0.84823 1.90755 1.52006 1.58897 1.37070 1.20150 0.80959 0.85087 0.81557 1.90749 1.53521 1.58951 1.36158 1.49339 1.52473 1.29088 1.05204 1.23880 0.97670 0.90387 0.91550 1.23741 0.95524 0.98812 0.80350 1.92848 1.79468 1.96460 1.48905 1.23994 1.05252 0.95397 0.78441 1.19805 0.93855 0.96727 0.94758 1.20878 0.99421 1.00820 0.92523 1.20989 0.95428 1.00371 0.97004 1.21005 0.95517 1.00361 0.98182 1.21040 0.99840 1.00206 0.92826 1.20946 0.94391 0.98368 0.97745 0.92894 0.95603 0.95760 0.75967 0.88392 0.88091 0.85777 0.87859 0.87201 0.86558 0.86569 0.86778 0.86522 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.98 8.53 -34.44 -0.29 -14.28 16 8 H 0.06 1.52 6.79 -52.48 -0.36 1.17 16 9 C 0.02 0.62 4.68 -27.88 -0.13 0.49 16 10 C 0.18 3.65 2.19 -69.08 -0.15 3.50 16 11 H 0.09 1.92 7.49 -51.93 -0.39 1.53 16 12 N -0.69 -12.34 5.04 -55.36 -0.28 -12.62 16 13 C 0.51 9.12 7.75 -11.58 -0.09 9.03 16 14 O -0.51 -10.14 14.78 5.50 0.08 -10.06 16 15 C 0.54 8.54 8.12 -11.58 -0.09 8.44 16 16 O -0.52 -8.99 17.21 5.50 0.09 -8.89 16 17 N -0.62 -7.83 3.61 -178.99 -0.65 -8.48 16 18 C 0.09 0.77 8.73 -2.96 -0.03 0.75 16 19 C 0.05 0.41 5.85 -25.79 -0.15 0.26 16 20 F -0.20 -1.80 17.42 2.25 0.04 -1.76 16 21 C 0.09 0.95 7.65 -2.83 -0.02 0.93 16 22 C -0.05 -0.94 4.50 -104.62 -0.47 -1.41 16 23 C -0.12 -1.99 9.02 -39.58 -0.36 -2.35 16 24 C -0.12 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 26 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 27 C -0.10 -1.67 8.83 -39.58 -0.35 -2.02 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.68 8.08 -51.93 -0.42 0.26 16 31 H 0.40 6.55 6.35 -40.82 -0.26 6.29 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.11 1.16 7.42 -51.93 -0.39 0.78 16 37 H 0.12 1.84 6.95 -52.49 -0.36 1.48 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 40 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.12 2.05 7.84 -52.49 -0.41 1.64 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -33.14 357.77 -8.13 -41.27 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.10 Total: 6.27 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.43 Total: -1.75 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.19 Total: -46.97 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.18 Total: -18.95 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.14 -8.13 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117610834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.561 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds