Wall clock time and date at job start Sat Apr 11 2020 00:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99843 * 2 1 4 4 H 1.48503 * 109.47261 * 239.99990 * 3 2 1 5 5 H 1.48503 * 109.47392 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47153 * 119.99885 * 3 2 1 7 7 C 1.37876 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99806 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47038 * 174.85383 * 9 7 2 11 11 H 1.08997 * 109.47173 * 54.19621 * 10 9 7 12 12 N 1.46500 * 109.47061 * 174.20306 * 10 9 7 13 13 C 1.34783 * 119.99479 * 278.67756 * 12 10 9 14 14 O 1.21341 * 119.99943 * 355.03461 * 13 12 10 15 15 C 1.49450 * 119.99469 * 175.03535 * 13 12 10 16 16 O 1.21345 * 120.00199 * 0.02562 * 15 13 12 17 17 N 1.34783 * 119.99469 * 180.02562 * 15 13 12 18 18 C 1.47583 * 134.48907 * 179.97438 * 17 15 13 19 19 C 1.53949 * 86.11419 * 155.36059 * 18 17 15 20 20 F 1.39902 * 113.73956 * 137.95313 * 19 18 17 21 21 C 1.47811 * 134.45569 * 359.86592 * 17 15 13 22 22 C 1.50708 * 109.46706 * 294.19580 * 10 9 7 23 23 C 1.38227 * 120.00174 * 279.72652 * 22 10 9 24 24 C 1.38244 * 120.00090 * 179.78978 * 23 22 10 25 25 C 1.38236 * 119.99395 * 0.44441 * 24 23 22 26 26 C 1.38238 * 120.00454 * 359.80888 * 25 24 23 27 27 C 1.38233 * 119.99595 * 100.00348 * 22 10 9 28 28 H 0.96998 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47378 * 54.85444 * 9 7 2 30 30 H 1.09002 * 109.47805 * 294.84960 * 9 7 2 31 31 H 0.97001 * 120.00417 * 98.68664 * 12 10 9 32 32 H 1.08996 * 113.77100 * 41.05415 * 18 17 15 33 33 H 1.09003 * 113.76730 * 269.65583 * 18 17 15 34 34 H 1.08997 * 113.73853 * 269.15433 * 19 18 17 35 35 H 1.09004 * 113.76635 * 90.38704 * 21 17 15 36 36 H 1.08992 * 113.84082 * 318.91685 * 21 17 15 37 37 H 1.08002 * 120.00557 * 359.97438 * 23 22 10 38 38 H 1.07994 * 120.00065 * 180.27134 * 24 23 22 39 39 H 1.08006 * 119.99530 * 179.83717 * 25 24 23 40 40 H 1.07997 * 119.99954 * 180.02562 * 26 25 24 41 41 H 1.08001 * 120.00412 * 359.97264 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2404 -3.6591 -0.1282 11 1 2.9960 -3.5808 0.6534 12 7 1.5240 -4.9295 0.0105 13 6 1.2205 -5.4016 1.2360 14 8 1.6182 -4.8220 2.2250 15 6 0.3941 -6.6389 1.3764 16 8 -0.0031 -7.2187 0.3872 17 7 0.0902 -7.1106 2.6018 18 6 -0.6785 -8.2661 3.1038 19 6 0.1809 -8.1519 4.3760 20 9 -0.5430 -8.3184 5.5615 21 6 0.3950 -6.6790 3.9822 22 6 2.9069 -3.6033 -1.4787 23 6 2.2514 -4.0909 -2.5937 24 6 2.8611 -4.0356 -3.8332 25 6 4.1300 -3.5012 -3.9560 26 6 4.7877 -3.0183 -2.8401 27 6 4.1762 -3.0696 -1.6014 28 1 -0.4850 0.8400 0.0004 29 1 0.5574 -2.5182 -0.8401 30 1 0.6950 -2.5977 0.9328 31 1 1.2682 -5.4309 -0.7795 32 1 -0.5101 -9.1840 2.5407 33 1 -1.7351 -8.0534 3.2670 34 1 1.0909 -8.7512 4.3460 35 1 -0.3458 -5.9995 4.4037 36 1 1.4191 -6.3319 4.1193 37 1 1.2617 -4.5123 -2.4972 38 1 2.3471 -4.4126 -4.7051 39 1 4.6074 -3.4604 -4.9240 40 1 5.7789 -2.6004 -2.9362 41 1 4.6900 -2.6923 -0.7296 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117610834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:12:48 Heat of formation + Delta-G solvation = -74.305124 kcal Electronic energy + Delta-G solvation = -26421.746958 eV Core-core repulsion = 22409.574337 eV Total energy + Delta-G solvation = -4012.172621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.70682 -41.94360 -40.63791 -39.64387 -38.74259 -36.84030 -34.90746 -32.69729 -31.68870 -30.88636 -30.41552 -27.70280 -27.15055 -25.18225 -23.95793 -23.52316 -22.57010 -21.27365 -20.80176 -19.30896 -18.66737 -18.24586 -18.12156 -17.50658 -16.94247 -16.87949 -16.53537 -16.40221 -15.98623 -15.78309 -15.60824 -15.12245 -15.02757 -14.55424 -14.34969 -14.26753 -14.18090 -14.05533 -13.89436 -13.63328 -13.16909 -12.95408 -12.90428 -12.71174 -12.55106 -12.44665 -12.02529 -11.91169 -11.72959 -11.68042 -11.38710 -10.74320 -10.57104 -10.26589 -10.11780 -9.72389 -9.49802 -8.20338 -6.29677 0.22716 0.49999 0.59021 1.00916 1.39301 1.42375 1.49385 2.03727 2.19402 2.41837 2.88246 2.97098 3.14948 3.18016 3.31453 3.77173 3.87022 4.01327 4.02058 4.19276 4.21985 4.33151 4.38659 4.42308 4.44201 4.60131 4.69187 4.71652 4.79731 5.02168 5.04652 5.12323 5.22880 5.41140 5.44320 5.61590 5.67645 5.72536 5.82495 5.98276 6.07005 6.18815 6.20720 6.53174 6.79948 6.88995 7.38117 8.92160 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.003750 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.557523 B = 7464.291267 C = 9121.843759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.068 0.932 9 C 0.038 3.962 10 C 0.197 3.803 11 H 0.077 0.923 12 N -0.686 5.686 13 C 0.502 3.498 14 O -0.537 6.537 15 C 0.540 3.460 16 O -0.539 6.539 17 N -0.624 5.624 18 C 0.085 3.915 19 C 0.077 3.923 20 F -0.200 7.200 21 C 0.080 3.920 22 C -0.077 4.077 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.116 4.116 28 H 0.262 0.738 29 H -0.001 1.001 30 H -0.017 1.017 31 H 0.412 0.588 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.089 -16.591 1.174 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.086 0.914 9 C 0.000 4.000 10 C 0.094 3.906 11 H 0.095 0.905 12 N -0.338 5.338 13 C 0.283 3.717 14 O -0.414 6.414 15 C 0.323 3.677 16 O -0.416 6.416 17 N -0.359 5.359 18 C -0.036 4.036 19 C 0.041 3.959 20 F -0.181 7.181 21 C -0.043 4.043 22 C -0.077 4.077 23 C -0.151 4.151 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.134 4.134 28 H 0.071 0.929 29 H 0.017 0.983 30 H 0.002 0.998 31 H 0.250 0.750 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.172 0.828 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.033 -16.300 1.184 17.100 hybrid contribution -0.484 1.151 -0.079 1.251 sum 4.549 -15.149 1.105 15.856 Atomic orbital electron populations 1.70101 1.07859 1.27683 1.51814 1.25874 0.95602 1.03100 0.94789 0.85576 0.78368 0.78340 0.79296 1.18838 1.21143 1.19206 1.21357 0.93572 0.91015 1.50136 0.91399 1.19191 0.93746 0.92449 0.94647 1.19987 0.93882 0.81735 0.95023 0.90455 1.46031 1.56547 1.23260 1.07993 1.20220 0.81538 0.85625 0.84335 1.90727 1.52966 1.59965 1.37739 1.19586 0.81091 0.84335 0.82655 1.90732 1.54583 1.59319 1.36992 1.49489 1.51821 1.29858 1.04781 1.24200 0.98072 0.89547 0.91734 1.23640 0.96039 0.96741 0.79523 1.92849 1.79764 1.96295 1.49160 1.24209 1.05056 0.97665 0.77350 1.19708 0.94920 0.99165 0.93927 1.21034 0.99695 1.01240 0.93162 1.21373 0.95897 0.99639 0.96930 1.21476 0.95029 0.98393 0.99484 1.21404 1.00992 0.99547 0.91994 1.21099 0.94298 0.99013 0.99033 0.92935 0.98276 0.99844 0.74977 0.86494 0.87105 0.82820 0.87978 0.87669 0.86556 0.83652 0.83095 0.83644 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 2 C 0.00 0.23 5.46 84.65 0.46 0.70 16 3 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.52 -29.33 8.53 25.60 0.22 -29.12 16 8 H 0.07 3.60 6.79 -2.91 -0.02 3.58 16 9 C 0.04 2.02 4.68 29.85 0.14 2.16 16 10 C 0.20 8.42 2.19 44.25 0.10 8.52 16 11 H 0.08 3.47 7.49 -2.39 -0.02 3.45 16 12 N -0.69 -25.94 5.04 -447.42 -2.25 -28.20 16 13 C 0.50 18.93 7.75 87.27 0.68 19.61 16 14 O -0.54 -22.47 14.78 -3.22 -0.05 -22.52 16 15 C 0.54 17.47 8.12 87.27 0.71 18.18 16 16 O -0.54 -18.85 17.21 -3.23 -0.06 -18.90 16 17 N -0.62 -15.43 3.61 -838.56 -3.03 -18.45 16 18 C 0.09 1.35 8.73 86.49 0.76 2.10 16 19 C 0.08 1.04 5.85 31.26 0.18 1.22 16 20 F -0.20 -3.26 17.42 44.97 0.78 -2.47 16 21 C 0.08 1.62 7.65 86.45 0.66 2.28 16 22 C -0.08 -2.89 4.50 -19.87 -0.09 -2.98 16 23 C -0.13 -4.48 9.02 22.27 0.20 -4.28 16 24 C -0.12 -3.33 10.05 22.27 0.22 -3.10 16 25 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 26 C -0.12 -3.40 10.05 22.27 0.22 -3.17 16 27 C -0.12 -4.00 8.83 22.27 0.20 -3.80 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 29 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 30 H -0.02 -1.02 8.08 -2.39 -0.02 -1.03 16 31 H 0.41 14.05 6.35 -92.71 -0.59 13.46 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.15 1.26 8.14 -2.39 -0.02 1.25 16 35 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.10 2.26 7.42 -2.39 -0.02 2.24 16 37 H 0.12 3.78 6.95 -2.91 -0.02 3.76 16 38 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.12 4.03 7.84 -2.91 -0.02 4.01 16 Total: -1.00 -74.35 357.77 3.07 -71.28 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.48 Total: 24.64 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.88 Total: 5.35 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.00 Total: -103.85 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.10 Total: -41.42 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -74.35 3.07 -71.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117610834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.021 kcal (2) G-P(sol) polarization free energy of solvation -74.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds